Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Reverse (-)

20247688 .. 20261457

Gene Structure 13770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCACCATTGCTGTTGCTAGCTTCATTGGTCTCACCACTCCCATCACTAGAACTCAAGGACTTTCTGGGCATTTCCCAAATCCCTCTTCCCCTTTATCCTCCCTCAAATATTCCCAATTCGGAACCACCTTCTCTCCCTCCATGGCCACCAACCCAATCCAAGTCTCTGCTTCTTCTTCATCATCATCATCATCACCCACCATTGATGAAAAGAAAGGTGCAGGCTTTTCTGGGATTGTGGGAGCCAATGACCTGTTGATTGTTGGGCCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGCAGGAGCATCCGGGTTGTGAAATATATGGGCAAACAGTCACCGTTGATCACCACGAGGAGTTGATCAAGGTGGGTATCAATCCATGCTTGAAGGGGACCAAAACGGACAATAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCCGATTATCCCGGTGATGTTCGAGTGGCTGCATTGAACTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCTCTGCACCGTATGATTGCAATGACAACAGTCCATGTGATGAGGATACTCCAGTAGTGCCAATAGGAAGGAGCCCGAGGACCGACGTCCTTCTTAATGCAGAAAAAGTAGTGCTGGAGTTTGGTGGTGTTGTTCTTAGATTGGCAGGGCTTTACAAAGCAGATAGAGGTGCCCATGTTTATTGGTTATCGAAGGGGAACGTAGACGCAAATCCAGATCACGTTCTGAATCTCATACATTACGAGGATGCAGCTTCCCTATCTGTTGCAATCTTAAAGAAGCGATTACGTAACCGGATTCTCTTGGCTTGTGACAAATCATCCATTGTCCAGGAAAGAAGTGATGGACTTAAAGTGGGAAATTTACCAAAATGTTTGAGAGCTTTACAGGTAAGCTTCTTAGTAGTATCCCATATAGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

34.17

Weight (kDa)

7.07

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	704
AccI	GTMKAC	1 cut(s)	738
AciI	CCGC	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	3, 147
AcsI	RAATTY	1 cut(s)	895
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	400, 499
AjnI	CCWGG	1 cut(s)	864
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	5 cut(s)	24, 537, 788, 917, 930
AluI	AGCT	5 cut(s)	24, 537, 788, 917, 930
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	38, 172
Ama87I	CYCGRG	1 cut(s)	610
AoxI	GGCC	3 cut(s)	3, 147, 269
ApeKI	GCWGC	2 cut(s)	491, 785
ApoI	RAATTY	1 cut(s)	895
AspS9I	GGNCC	3 cut(s)	269, 405, 615
AsuC2I	CCSGG	3 cut(s)	273, 321, 474
AsuHPI	GGTGA	6 cut(s)	28, 189, 340, 350, 488, 521
AsuNHI	GCTAGC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	2 cut(s)	405, 615
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BalI	TGGCCA	2 cut(s)	5, 149
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	478, 797
BccI	CCATC	3 cut(s)	53, 460, 872
BciT130I	CCWGG	1 cut(s)	866
BciVI	GTATCC	2 cut(s)	574, 952
BclI	TGATCA	2 cut(s)	355, 372
BcnI	CCSGG	3 cut(s)	273, 321, 474
BcoDI	GTCTC	2 cut(s)	38, 172
BfaI	CTAG	3 cut(s)	21, 51, 456
BfuI	GTATCC	2 cut(s)	574, 952
BisI	GCNGC	3 cut(s)	308, 492, 786
BlsI	GCNGC	3 cut(s)	309, 493, 787
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	4 cut(s)	273, 321, 474, 866
Bme18I	GGWCC	2 cut(s)	405, 615
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	3 cut(s)	269, 405, 615
BmiI	GGNNCC	5 cut(s)	127, 247, 406, 608, 706
BmrFI	CCNGG	4 cut(s)	273, 321, 474, 866
BmsI	GCATC	2 cut(s)	325, 772
BmtI	GCTAGC	1 cut(s)	24
BoxI	GACNNNNGTC	2 cut(s)	564, 620
BpmI	CTGGAG	2 cut(s)	570, 671
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	3 cut(s)	273, 321, 474
BsaAI	YACGTR	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	144, 611
BsaWI	WCCGGW	1 cut(s)	828
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	2 cut(s)	506, 587
Bse3DI	GCAATG	2 cut(s)	9, 562
BseBI	CCWGG	1 cut(s)	866
BseDI	CCNNGG	2 cut(s)	144, 611
BseGI	GGATG	3 cut(s)	316, 787, 854
BseMI	GCAATG	2 cut(s)	9, 562
BseNI	ACTGG	2 cut(s)	506, 587
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	478, 797
BsgI	GTGCAG	2 cut(s)	243, 525
BshFI	GGCC	3 cut(s)	5, 149, 271
BshNI	GGYRCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	4 cut(s)	272, 320, 474, 829
BslFI	GGGAC	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	38, 172
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	5, 149, 271
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	448, 611, 709
Bsp143I	GATC	3 cut(s)	355, 372, 751
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	3 cut(s)	5, 149, 271
BspLI	GGNNCC	5 cut(s)	127, 247, 406, 608, 706
BspOI	GCTAGC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	9, 562
BsrI	ACTGG	2 cut(s)	506, 587
BssECI	CCNNGG	2 cut(s)	144, 611
BssMI	GATC	3 cut(s)	355, 372, 751
BssNI	GRCGYC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	4 cut(s)	346, 352, 546, 566
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	22, 226
BstDEI	CTNAG	2 cut(s)	671, 934
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	316, 787, 854
BstKTI	GATC	3 cut(s)	358, 375, 754
BstMAI	GTCTC	2 cut(s)	38, 172
BstMBI	GATC	3 cut(s)	355, 372, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 313
BstNI	CCWGG	1 cut(s)	866
BstPAI	GACNNNNGTC	2 cut(s)	564, 620
BstSCI	CCNGG	4 cut(s)	271, 319, 472, 864
BstSLI	GKGCMC	1 cut(s)	709
BstSNI	TACGTA	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	478, 797
BsuI	GTATCC	2 cut(s)	574, 952
BsuRI	GGCC	3 cut(s)	5, 149, 271
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	316, 787, 854
Cac8I	GCNNGC	2 cut(s)	22, 226
Cfr13I	GGNCC	3 cut(s)	269, 405, 615
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	4 cut(s)	145, 393, 570, 710
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	671, 934
DpnI	GATC	3 cut(s)	357, 374, 753
DpnII	GATC	3 cut(s)	355, 372, 751
EaeI	YGGCCR	2 cut(s)	3, 147
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	611
Eco31I	GGTCTC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	405, 615
Eco88I	CYCGRG	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	864
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	148, 396, 573, 713
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	4 cut(s)	144, 392, 569, 709
FbaI	TGATCA	2 cut(s)	355, 372
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	308, 492, 786
FokI	GGATG	3 cut(s)	303, 794, 841
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	308, 492, 786
FspBI	CTAG	3 cut(s)	21, 51, 456
GluI	GCNGC	3 cut(s)	308, 492, 786
GsuI	CTGGAG	2 cut(s)	570, 671
HaeIII	GGCC	3 cut(s)	5, 149, 271
HapII	CCGG	4 cut(s)	272, 320, 474, 829
HgaI	GACGC	1 cut(s)	749
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	148, 396, 573, 713
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	2 cut(s)	763, 832
HpaII	CCGG	4 cut(s)	272, 320, 474, 829
HphI	GGTGA	6 cut(s)	28, 189, 340, 350, 488, 521
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	4 cut(s)	125, 466, 762, 959
Hpy188III	TCNNGA	2 cut(s)	456, 749
Hpy8I	GTNNAC	1 cut(s)	739
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	6 cut(s)	142, 394, 506, 597, 635, 721
HpyCH4III	ACNGT	4 cut(s)	346, 352, 546, 566
HpyCH4IV	ACGT	4 cut(s)	621, 735, 756, 823
HpyCH4V	TGCA	8 cut(s)	224, 296, 494, 542, 555, 635, 785, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 313
HpyF3I	CTNAG	2 cut(s)	671, 934
HpySE526I	ACGT	4 cut(s)	621, 735, 756, 823
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	148, 396, 573, 713
Ksp22I	TGATCA	2 cut(s)	355, 372
Kzo9I	GATC	3 cut(s)	355, 372, 751
LmnI	GCTCC	4 cut(s)	245, 313, 451, 606
Lsp1109I	GCAGC	2 cut(s)	478, 797
LweI	GCATC	2 cut(s)	325, 772
MaeI	CTAG	3 cut(s)	21, 51, 456
MaeII	ACGT	4 cut(s)	621, 735, 756, 823
MaeIII	GTNAC	3 cut(s)	346, 824, 845
MalI	GATC	3 cut(s)	357, 374, 753
MboI	GATC	3 cut(s)	355, 372, 751
MboII	GAAGA	3 cut(s)	81, 168, 171
MhlI	GDGCHC	3 cut(s)	448, 611, 709
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	2 cut(s)	119, 895
MluNI	TGGCCA	2 cut(s)	5, 149
Mox20I	TGGCCA	2 cut(s)	5, 149
MscI	TGGCCA	2 cut(s)	5, 149
MseI	TTAA	3 cut(s)	630, 809, 885
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	4 cut(s)	272, 320, 474, 829
MspR9I	CCNGG	4 cut(s)	273, 321, 474, 866
MvaI	CCWGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	2 cut(s)	11, 313
NciI	CCSGG	3 cut(s)	273, 321, 474
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	355, 372, 751
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	4 cut(s)	148, 396, 573, 713
NlaIV	GGNNCC	5 cut(s)	127, 247, 406, 608, 706
NmuCI	GTSAC	2 cut(s)	346, 845
PfeI	GAWTC	2 cut(s)	763, 832
PfoI	TCCNGGA	1 cut(s)	864
PkrI	GCNGC	3 cut(s)	309, 493, 787
Ppu21I	YACGTR	1 cut(s)	824
PshAI	GACNNNNGTC	2 cut(s)	564, 620
Psp6I	CCWGG	1 cut(s)	864
PspGI	CCWGG	1 cut(s)	864
PspN4I	GGNNCC	5 cut(s)	127, 247, 406, 608, 706
PspPI	GGNCC	3 cut(s)	269, 405, 615
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	630, 809, 885
SatI	GCNGC	3 cut(s)	308, 492, 786
Sau3AI	GATC	3 cut(s)	355, 372, 751
Sau96I	GGNCC	3 cut(s)	269, 405, 615
ScaI	AGTACT	1 cut(s)	279
ScrFI	CCNGG	4 cut(s)	273, 321, 474, 866
SduI	GDGCHC	3 cut(s)	448, 611, 709
SfaNI	GCATC	2 cut(s)	325, 772
SinI	GGWCC	2 cut(s)	405, 615
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SnaBI	TACGTA	1 cut(s)	824
Sse9I	AATT	2 cut(s)	119, 895
SsiI	CCGC	1 cut(s)	307
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	3 cut(s)	21, 51, 456
StyD4I	CCNGG	4 cut(s)	271, 319, 472, 864
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	4 cut(s)	346, 352, 546, 566
TaiI	ACGT	4 cut(s)	624, 738, 759, 826
TaqI	TCGA	2 cut(s)	484, 725
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	2 cut(s)	119, 895
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	763, 832
Tru1I	TTAA	3 cut(s)	630, 809, 885
Tru9I	TTAA	3 cut(s)	630, 809, 885
TseFI	GTSAC	2 cut(s)	346, 845
TseI	GCWGC	2 cut(s)	491, 785
Tsp45I	GTSAC	2 cut(s)	346, 845
TspDTI	ATGAA	3 cut(s)	16, 171, 225
TspGWI	ACGGA	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	405, 615
XapI	RAATTY	1 cut(s)	895
XbaI	TCTAGA	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	3 cut(s)	21, 51, 456
ZraI	GACGTC	1 cut(s)	622
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.