Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

43373458 .. 43376913

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCACCATTGCTATTGCCAGCTTCATTGGTCTCACCACTCCCATCACTAGAACTCAAGGACTTTCTGGGCATTTCCCAAATCCCTCTTCCCCTTTCTCCTCCCTCAAATATTCCCAATTCAGAACCACCTGCTCTCCCTCCATGGCCACCACCCCAATCCAAGTCTCTGCTTCATCATCATCATCATCGCCCGCCATTGATGAAAAGAAGGGTGCAGGCTTTTCCGGGATTGTGGGAGCCGACGACCTGTTGATTGTTGGGCCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGCAGGAGCATCCGGGTTGTGAAATATATGGGCAAACAGTCACCGTTGATCACCATGAGGAGTTGATCAAGGTGGGTATCAATCCATGCTTGAAGGGGACCAAAACGGACCATAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCGGATTATCCCGGTGATGTTCGAGTTGCTGCATTGAACTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGTTCTGCACCGTATGATTGCAATGACAACAGTCCATGTGATGAGGATACTCCAGTAGTGCCAATAGGAAGGAGCCCCAGGACCGATGTCCTTCTTAATGCAGAAAAAGTGGTGCTGGAGTTTGGTGGTGTTGTTCTTAGATTGGCAGGGCTTTACAAAGCAGATAGAGGTGCCCATGTTTATTGGTTATCGAAGGGGACTGTAGACGCAAATCCAGATCACGTTCTGAATCTCATACATTACGAGGATGCAGCTTCCCTTTCTGTTGCAATCTTAAAGAAGCAATTACGTAACCGGATTCTCTTGGGTTGTGACAATCATCCATTGTCCAGGAAAGAAGTGATGGACTTGGTTAATAAAAGTGGGAAATTTACCAAAGTGTTTGAGAGCTTTACAGGAACTACTGATCCCTTGGGAAAGCGATTAAACAACTCAAAAACTCGTGCAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCTCTCAATTCCTTGAGAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

37.17

Weight (kDa)

7.1

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	2 cut(s)	195, 301
AclWI	GGATC	1 cut(s)	929
AcoI	YGGCCR	2 cut(s)	3, 147
AcsI	RAATTY	1 cut(s)	896
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	394, 493
AjnI	CCWGG	2 cut(s)	605, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AloI	GAACNNNNNNTCC	2 cut(s)	919, 951
AluBI	AGCT	3 cut(s)	24, 782, 918
AluI	AGCT	3 cut(s)	24, 782, 918
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	38, 172
AlwI	GGATC	1 cut(s)	929
AoxI	GGCC	3 cut(s)	3, 147, 263
ApeKI	GCWGC	2 cut(s)	485, 779
ApoI	RAATTY	1 cut(s)	896
AspS9I	GGNCC	4 cut(s)	263, 399, 409, 609
AsuC2I	CCSGG	4 cut(s)	229, 267, 315, 468
AsuHPI	GGTGA	5 cut(s)	28, 334, 344, 482, 515
AvaII	GGWCC	3 cut(s)	399, 409, 609
BaeGI	GKGCMC	1 cut(s)	703
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BalI	TGGCCA	2 cut(s)	5, 149
BanI	GGYRCC	1 cut(s)	698
BanII	GRGCYC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	969
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	472, 791
BccI	CCATC	3 cut(s)	53, 454, 865
BciT130I	CCWGG	2 cut(s)	607, 859
BciVI	GTATCC	1 cut(s)	568
BclI	TGATCA	2 cut(s)	349, 366
BcnI	CCSGG	4 cut(s)	229, 267, 315, 468
BcoDI	GTCTC	2 cut(s)	38, 172
BfaI	CTAG	2 cut(s)	51, 450
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	3 cut(s)	302, 486, 780
BlsI	GCNGC	3 cut(s)	303, 487, 781
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	6 cut(s)	229, 267, 315, 468, 607, 859
Bme18I	GGWCC	3 cut(s)	399, 409, 609
BmgT120I	GGNCC	4 cut(s)	263, 399, 409, 609
BmiI	GGNNCC	5 cut(s)	241, 400, 602, 700, 990
BmrFI	CCNGG	6 cut(s)	229, 267, 315, 468, 607, 859
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	2 cut(s)	319, 766
BmuI	ACTGGG	1 cut(s)	996
BoxI	GACNNNNGTC	2 cut(s)	558, 614
BpmI	CTGGAG	2 cut(s)	564, 665
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	4 cut(s)	229, 267, 315, 468
BsaAI	YACGTR	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	4 cut(s)	144, 456, 605, 939
BsaWI	WCCGGW	1 cut(s)	822
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	3 cut(s)	500, 581, 1002
Bse3DI	GCAATG	2 cut(s)	9, 556
BseBI	CCWGG	2 cut(s)	607, 859
BseDI	CCNNGG	4 cut(s)	144, 456, 605, 939
BseGI	GGATG	3 cut(s)	310, 781, 847
BseMI	GCAATG	2 cut(s)	9, 556
BseNI	ACTGG	3 cut(s)	500, 581, 1002
BseRI	GAGGAG	2 cut(s)	91, 374
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	472, 791
BsgI	GTGCAG	3 cut(s)	237, 519, 993
BshFI	GGCC	3 cut(s)	5, 149, 265
BshNI	GGYRCC	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	5 cut(s)	228, 266, 314, 468, 823
BslFI	GGGAC	2 cut(s)	412, 739
BsmAI	GTCTC	2 cut(s)	38, 172
BsmFI	GGGAC	2 cut(s)	412, 739
BsnI	GGCC	3 cut(s)	5, 149, 265
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	442, 605, 703
Bsp143I	GATC	4 cut(s)	349, 366, 745, 934
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	195, 301
BspANI	GGCC	3 cut(s)	5, 149, 265
BspLI	GGNNCC	5 cut(s)	241, 400, 602, 700, 990
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	929
BspT107I	GGYRCC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	9, 556
BsrI	ACTGG	3 cut(s)	500, 581, 1002
BssECI	CCNNGG	4 cut(s)	144, 456, 605, 939
BssMI	GATC	4 cut(s)	349, 366, 745, 934
BssSI	CACGAG	1 cut(s)	969
BssT1I	CCWWGG	2 cut(s)	144, 939
Bst2BI	CACGAG	1 cut(s)	969
Bst2UI	CCWGG	2 cut(s)	607, 859
Bst4CI	ACNGT	5 cut(s)	340, 346, 540, 560, 730
Bst6I	CTCTTC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	22, 195, 220
BstDEI	CTNAG	1 cut(s)	665
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	310, 781, 847
BstKTI	GATC	4 cut(s)	352, 369, 748, 937
BstMAI	GTCTC	2 cut(s)	38, 172
BstMBI	GATC	4 cut(s)	349, 366, 745, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 307
BstNI	CCWGG	2 cut(s)	607, 859
BstPAI	GACNNNNGTC	2 cut(s)	558, 614
BstSCI	CCNGG	6 cut(s)	227, 265, 313, 466, 605, 857
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	703
BstSNI	TACGTA	1 cut(s)	818
BstV1I	GCAGC	2 cut(s)	472, 791
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	5, 149, 265
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	310, 781, 847
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	22, 195, 220
Cfr13I	GGNCC	4 cut(s)	263, 399, 409, 609
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	5 cut(s)	145, 356, 387, 564, 704
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	4 cut(s)	351, 368, 747, 936
DpnII	GATC	4 cut(s)	349, 366, 745, 934
EaeI	YGGCCR	2 cut(s)	3, 147
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	818
Eco130I	CCWWGG	2 cut(s)	144, 939
Eco24I	GRGCYC	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	399, 409, 609
EcoRII	CCWGG	2 cut(s)	605, 857
EcoT14I	CCWWGG	2 cut(s)	144, 939
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	144, 939
FaeI	CATG	5 cut(s)	148, 359, 390, 567, 707
FaqI	GGGAC	2 cut(s)	412, 739
FatI	CATG	5 cut(s)	144, 355, 386, 563, 703
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	2 cut(s)	349, 366
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	3 cut(s)	302, 486, 780
FokI	GGATG	3 cut(s)	297, 788, 834
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	3 cut(s)	302, 486, 780
FspBI	CTAG	2 cut(s)	51, 450
GluI	GCNGC	3 cut(s)	302, 486, 780
GsuI	CTGGAG	2 cut(s)	564, 665
HaeIII	GGCC	3 cut(s)	5, 149, 265
HapII	CCGG	5 cut(s)	228, 266, 314, 468, 823
HgaI	GACGC	1 cut(s)	743
Hin1II	CATG	5 cut(s)	148, 359, 390, 567, 707
HinfI	GANTC	3 cut(s)	757, 826, 1024
HpaII	CCGG	5 cut(s)	228, 266, 314, 468, 823
HphI	GGTGA	5 cut(s)	28, 334, 344, 482, 515
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	4 cut(s)	125, 460, 756, 1031
Hpy188III	TCNNGA	2 cut(s)	450, 743
Hpy8I	GTNNAC	1 cut(s)	733
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	6 cut(s)	205, 388, 500, 591, 629, 715
HpyCH4III	ACNGT	5 cut(s)	340, 346, 540, 560, 730
HpyCH4IV	ACGT	2 cut(s)	750, 817
HpyCH4V	TGCA	9 cut(s)	218, 290, 488, 536, 549, 629, 779, 797, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 307
HpyF3I	CTNAG	1 cut(s)	665
HpySE526I	ACGT	2 cut(s)	750, 817
Hsp92II	CATG	5 cut(s)	148, 359, 390, 567, 707
Ksp22I	TGATCA	2 cut(s)	349, 366
Kzo9I	GATC	4 cut(s)	349, 366, 745, 934
LmnI	GCTCC	4 cut(s)	239, 307, 445, 600
Lsp1109I	GCAGC	2 cut(s)	472, 791
LweI	GCATC	2 cut(s)	319, 766
MaeI	CTAG	2 cut(s)	51, 450
MaeII	ACGT	2 cut(s)	750, 817
MaeIII	GTNAC	3 cut(s)	340, 818, 839
MalI	GATC	4 cut(s)	351, 368, 747, 936
MboI	GATC	4 cut(s)	349, 366, 745, 934
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	3 cut(s)	442, 605, 703
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	4 cut(s)	119, 812, 896, 1013
MluNI	TGGCCA	2 cut(s)	5, 149
MnlI	CCTC	9 cut(s)	97, 112, 116, 151, 352, 466, 565, 689, 766
Mox20I	TGGCCA	2 cut(s)	5, 149
MscI	TGGCCA	2 cut(s)	5, 149
MseI	TTAA	4 cut(s)	624, 803, 882, 953
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	5 cut(s)	228, 266, 314, 468, 823
MspR9I	CCNGG	6 cut(s)	229, 267, 315, 468, 607, 859
MvaI	CCWGG	2 cut(s)	607, 859
MwoI	GCNNNNNNNGC	2 cut(s)	11, 307
NciI	CCSGG	4 cut(s)	229, 267, 315, 468
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	4 cut(s)	349, 366, 745, 934
NlaIII	CATG	5 cut(s)	148, 359, 390, 567, 707
NlaIV	GGNNCC	5 cut(s)	241, 400, 602, 700, 990
NmuCI	GTSAC	2 cut(s)	340, 839
PaqCI	CACCTGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	757, 826
PfoI	TCCNGGA	2 cut(s)	227, 857
PkrI	GCNGC	3 cut(s)	303, 487, 781
Ppu21I	YACGTR	1 cut(s)	818
PshAI	GACNNNNGTC	2 cut(s)	558, 614
Psp6I	CCWGG	2 cut(s)	605, 857
PspGI	CCWGG	2 cut(s)	605, 857
PspN4I	GGNNCC	5 cut(s)	241, 400, 602, 700, 990
PspPI	GGNCC	4 cut(s)	263, 399, 409, 609
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	624, 803, 882, 953
SatI	GCNGC	3 cut(s)	302, 486, 780
Sau3AI	GATC	4 cut(s)	349, 366, 745, 934
Sau96I	GGNCC	4 cut(s)	263, 399, 409, 609
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	6 cut(s)	229, 267, 315, 468, 607, 859
SduI	GDGCHC	3 cut(s)	442, 605, 703
SfaNI	GCATC	2 cut(s)	319, 766
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	3 cut(s)	399, 409, 609
SmlI	CTYRAG	2 cut(s)	57, 1019
SmoI	CTYRAG	2 cut(s)	57, 1019
SnaBI	TACGTA	1 cut(s)	818
Sse9I	AATT	4 cut(s)	119, 812, 896, 1013
SsiI	CCGC	2 cut(s)	195, 301
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	51, 450
StyD4I	CCNGG	6 cut(s)	227, 265, 313, 466, 605, 857
StyI	CCWWGG	2 cut(s)	144, 939
TaaI	ACNGT	5 cut(s)	340, 346, 540, 560, 730
TaiI	ACGT	2 cut(s)	753, 820
TaqI	TCGA	2 cut(s)	478, 719
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	4 cut(s)	119, 812, 896, 1013
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	757, 826
Tru1I	TTAA	4 cut(s)	624, 803, 882, 953
Tru9I	TTAA	4 cut(s)	624, 803, 882, 953
TseFI	GTSAC	2 cut(s)	340, 839
TseI	GCWGC	2 cut(s)	485, 779
Tsp45I	GTSAC	2 cut(s)	340, 839
TspDTI	ATGAA	3 cut(s)	16, 165, 219
TspGWI	ACGGA	1 cut(s)	422
VpaK11BI	GGWCC	3 cut(s)	399, 409, 609
XapI	RAATTY	1 cut(s)	896
XbaI	TCTAGA	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	2 cut(s)	51, 450
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.