Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Reverse (-)

10854931 .. 10856319

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGCACCATTGCTGGCATTATCCTCGCAACAACTCCGTTGACAAGACCTCGAGGACTCGTCGGGAATTTCCTGAATCTTCACTGCCCTTCCCTCAAATTTTCCCTATTCAGAACCACCTCCAACACAGCCATGGCCGCCGCGCCTTTCCATGTCTCCGCCGCCGCATCGTCGCCGTCATCCGCCATTGATGAAGAGAAGGAGGTAACTTCTTCTGGGAAGGTGGGAGCCGATGACCTGCTGATTGTGGGGCCGGGGATTCTTGGGCGCTTGGTGGCACAAAAATGGCGGGAGGAGCATCCTGGGTGTGAAATATATGGGCAAACAGTGACCGTTGATCACCACGAGGAGCTGAGTGAGGAGGGTATTAATCCATGTTTGAAGGGGACTAAAATGACCCACAAGTTTCCTTATGTCATCTTTTGTGCGCCACCATCGAGAACCTCAGACTACCCTGGTGATGTTAGAATGGCTGCATTGAACTGGAACGGTGAAGGTTCTTTTCTGTTTACATCAAGCTCTGCACCGTATGATTGCAACGACAATGGTCCATGTGACGAGGACACTCCAGTAGTGCCAATAGGGAGGAGCCCCAGGACGGATGTCCTACTTAAAGCAGAAGAAGTTGTGCTGGAGTTTGGCGGTGTTGTTCTTAGATTGGCGGGGCTTTACATATCCTTTATGAAAGTCGAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

24.91

Weight (kDa)

5.24

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	143
AciI	CCGC	9 cut(s)	138, 141, 159, 162, 165, 183, 289, 642, 662
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	67, 98
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	382, 481
AjnI	CCWGG	3 cut(s)	301, 454, 593
AluBI	AGCT	2 cut(s)	352, 519
AluI	AGCT	2 cut(s)	352, 519
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	135, 251
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	67, 98
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	3 cut(s)	145, 270, 430
AspS9I	GGNCC	2 cut(s)	251, 548
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	332, 470, 503
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	593
BauI	CACGAG	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	3 cut(s)	303, 456, 595
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	246
BisI	GCNGC	5 cut(s)	138, 141, 162, 165, 474
BlsI	GCNGC	5 cut(s)	139, 142, 163, 166, 475
Bme1390I	CCNGG	4 cut(s)	255, 303, 456, 595
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	251, 548
BmiI	GGNNCC	4 cut(s)	7, 229, 252, 590
BmrFI	CCNGG	4 cut(s)	255, 303, 456, 595
BmsI	GCATC	2 cut(s)	176, 307
BoxI	GACNNNNGTC	2 cut(s)	546, 602
BpmI	CTGGAG	2 cut(s)	552, 653
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	5 cut(s)	132, 254, 302, 454, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	488, 569
Bse3DI	GCAATG	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	303, 456, 595
BseDI	CCNNGG	5 cut(s)	132, 254, 302, 454, 593
BseGI	GGATG	3 cut(s)	179, 298, 607
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	344, 459
BseNI	ACTGG	2 cut(s)	488, 569
BseRI	GAGGAG	4 cut(s)	308, 362, 374, 601
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	460
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	137, 253
BshNI	GGYRCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	137, 253
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	8, 593
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	9 cut(s)	138, 141, 159, 162, 165, 183, 289, 642, 662
BspANI	GGCC	2 cut(s)	137, 253
BspCNI	CTCAG	2 cut(s)	345, 458
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	7, 229, 252, 590
BspMI	ACCTGC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	488, 569
BssECI	CCNNGG	5 cut(s)	132, 254, 302, 454, 593
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	3 cut(s)	303, 456, 595
Bst4CI	ACNGT	4 cut(s)	328, 334, 491, 528
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	353, 445, 653
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	179, 298, 607
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	3 cut(s)	145, 270, 430
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 295
BstNI	CCWGG	3 cut(s)	303, 456, 595
BstPAI	GACNNNNGTC	2 cut(s)	546, 602
BstSCI	CCNGG	4 cut(s)	253, 301, 454, 593
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	137, 253
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	179, 298, 607
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 333
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	3 cut(s)	145, 270, 430
Cfr13I	GGNCC	2 cut(s)	251, 548
CviAII	CATG	4 cut(s)	133, 152, 375, 552
CviJI	RGCY	9 cut(s)	131, 137, 230, 253, 352, 473, 519, 591, 667
CviKI_1	RGCY	9 cut(s)	131, 137, 230, 253, 352, 473, 519, 591, 667
DdeI	CTNAG	3 cut(s)	353, 445, 653
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	2 cut(s)	148, 172
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	301, 454, 593
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	4 cut(s)	136, 155, 378, 555
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	4 cut(s)	132, 151, 374, 551
FauI	CCCGC	2 cut(s)	282, 655
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	138, 141, 162, 165, 474
FokI	GGATG	3 cut(s)	166, 285, 614
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	5 cut(s)	138, 141, 162, 165, 474
GlaI	GCGC	3 cut(s)	144, 269, 429
GluI	GCNGC	5 cut(s)	138, 141, 162, 165, 474
GsuI	CTGGAG	2 cut(s)	552, 653
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	137, 253
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	3 cut(s)	145, 270, 430
Hin1II	CATG	4 cut(s)	136, 155, 378, 555
Hin6I	GCGC	3 cut(s)	143, 268, 428
HinP1I	GCGC	3 cut(s)	143, 268, 428
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	57, 76, 259
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	3 cut(s)	332, 470, 503
Hpy166II	GTNNAC	2 cut(s)	42, 510
Hpy188I	TCNGA	3 cut(s)	113, 448, 698
Hpy188III	TCNNGA	3 cut(s)	64, 73, 438
Hpy8I	GTNNAC	2 cut(s)	42, 510
Hpy99I	CGWCG	2 cut(s)	65, 175
HpyAV	CCTTC	5 cut(s)	99, 193, 214, 376, 488
HpyCH4III	ACNGT	4 cut(s)	328, 334, 491, 528
HpyCH4V	TGCA	3 cut(s)	476, 524, 537
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 295
HpyF3I	CTNAG	3 cut(s)	353, 445, 653
Hsp92II	CATG	4 cut(s)	136, 155, 378, 555
HspAI	GCGC	3 cut(s)	143, 268, 428
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	4 cut(s)	227, 295, 349, 588
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	2 cut(s)	176, 307
MaeIII	GTNAC	3 cut(s)	205, 328, 554
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	71, 204, 206, 632
MhlI	GDGCHC	2 cut(s)	8, 593
MluCI	AATT	2 cut(s)	67, 98
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	2 cut(s)	369, 612
MslI	CAYNNNNRTG	2 cut(s)	131, 283
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	4 cut(s)	255, 303, 456, 595
MvaI	CCWGG	3 cut(s)	303, 456, 595
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	137, 295
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	4 cut(s)	136, 155, 378, 555
NlaIV	GGNNCC	4 cut(s)	7, 229, 252, 590
NmuCI	GTSAC	2 cut(s)	328, 554
PaeR7I	CTCGAG	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	76, 259
PkrI	GCNGC	5 cut(s)	139, 142, 163, 166, 475
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PshAI	GACNNNNGTC	2 cut(s)	546, 602
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	3 cut(s)	301, 454, 593
PspGI	CCWGG	3 cut(s)	301, 454, 593
PspN4I	GGNNCC	4 cut(s)	7, 229, 252, 590
PspPI	GGNCC	2 cut(s)	251, 548
PspXI	VCTCGAGB	1 cut(s)	51
RseI	CAYNNNNRTG	2 cut(s)	131, 283
SaqAI	TTAA	2 cut(s)	369, 612
SatI	GCNGC	5 cut(s)	138, 141, 162, 165, 474
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	251, 548
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	4 cut(s)	255, 303, 456, 595
SduI	GDGCHC	2 cut(s)	8, 593
SetI	ASST	9 cut(s)	52, 122, 207, 225, 240, 354, 446, 499, 521
SfaNI	GCATC	2 cut(s)	176, 307
Sfr274I	CTCGAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	548
SlaI	CTCGAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	2 cut(s)	131, 283
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	2 cut(s)	67, 98
SsiI	CCGC	9 cut(s)	138, 141, 159, 162, 165, 183, 289, 642, 662
StyD4I	CCNGG	4 cut(s)	253, 301, 454, 593
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	4 cut(s)	328, 334, 491, 528
TaqI	TCGA	3 cut(s)	52, 437, 690
TasI	AATT	2 cut(s)	67, 98
TauI	GCSGC	4 cut(s)	140, 143, 164, 167
TfiI	GAWTC	2 cut(s)	76, 259
Tru1I	TTAA	2 cut(s)	369, 612
Tru9I	TTAA	2 cut(s)	369, 612
TscAI	CASTG	2 cut(s)	89, 333
TseFI	GTSAC	2 cut(s)	328, 554
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	328, 554
TspDTI	ATGAA	2 cut(s)	207, 698
TspGWI	ACGGA	2 cut(s)	27, 614
TspRI	CASTG	2 cut(s)	89, 333
VpaK11BI	GGWCC	1 cut(s)	548
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	2 cut(s)	67, 98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.