Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

43193697 .. 43197169

Gene Structure 3473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCCACCATTGCTATTGCCAGCTTCATTGGTCTCACCACTCCCATCACTAGAACTCAAGGACTTTCTGGGCATTTCCCAAATCCCTCTTCCCCTTTCTCCTCCCTCAAATATTCCCAATTCAGAACCACCTTCTCTCCCTCCATGGCCACCACCCCAATCCAAGTCTCTGCTTCTTCTTCATCATCATCATCGCCCGCCATTGATGAAAAGAAAGGTGCAGGCTTTTCCGGGATTGTGGGAGCCGATGACCTGTTGATTGTTGGGCCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGCAGGAGCATCCGGGTTGTGAAATATATGGGCAAACAGTCACCGTTGATCACCATGAGGAGTTGATCAAGGTGGGTATCAATCCATGCTTGAAGGGGACCAAAACGGACCATAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCGGATTATCCCGGTGATGTTCGAGTGGCTGCATTGAACTGGAATGGTGAAGGTTCTTTCTTGTTTACATCAAGCTCTGCACCGTATGATTGCAATGACAACAGTCCATGTGATGAGGATACTCCAGTAGTGCCAATAGGAAGGAGCCCCCGGACCGATGTCCTTCTTAATGCAGAAAAAGTGGTGCTGGAGTTTGGTGGTGTTGTTCTTAGATTGGCAGGGCTTTACATATCCTTTATGGAATTGGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

25.34

Weight (kDa)

5.34

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	198, 304
AcoI	YGGCCR	2 cut(s)	3, 147
AcsI	RAATTY	1 cut(s)	707
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	397, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	2 cut(s)	24, 534
AluI	AGCT	2 cut(s)	24, 534
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	38, 172
AoxI	GGCC	3 cut(s)	3, 147, 266
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	707
AspS9I	GGNCC	4 cut(s)	266, 402, 412, 612
AsuC2I	CCSGG	5 cut(s)	232, 270, 318, 471, 610
AsuHPI	GGTGA	5 cut(s)	28, 337, 347, 485, 518
AvaII	GGWCC	3 cut(s)	402, 412, 612
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BalI	TGGCCA	2 cut(s)	5, 149
BanII	GRGCYC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	2 cut(s)	53, 457
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	2 cut(s)	352, 369
BcnI	CCSGG	5 cut(s)	232, 270, 318, 471, 610
BcoDI	GTCTC	2 cut(s)	38, 172
BfaI	CTAG	2 cut(s)	51, 453
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	2 cut(s)	305, 489
BlsI	GCNGC	2 cut(s)	306, 490
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	5 cut(s)	232, 270, 318, 471, 610
Bme18I	GGWCC	3 cut(s)	402, 412, 612
BmgT120I	GGNCC	4 cut(s)	266, 402, 412, 612
BmiI	GGNNCC	3 cut(s)	244, 403, 605
BmrFI	CCNGG	5 cut(s)	232, 270, 318, 471, 610
BmsI	GCATC	1 cut(s)	322
BoxI	GACNNNNGTC	2 cut(s)	561, 617
BpmI	CTGGAG	2 cut(s)	567, 668
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	5 cut(s)	232, 270, 318, 471, 610
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	144, 459, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	2 cut(s)	503, 584
Bse3DI	GCAATG	2 cut(s)	9, 559
BseDI	CCNNGG	3 cut(s)	144, 459, 608
BseGI	GGATG	1 cut(s)	313
BseMI	GCAATG	2 cut(s)	9, 559
BseNI	ACTGG	2 cut(s)	503, 584
BseRI	GAGGAG	2 cut(s)	91, 377
BseXI	GCAGC	1 cut(s)	475
BsgI	GTGCAG	2 cut(s)	240, 522
BshFI	GGCC	3 cut(s)	5, 149, 268
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	5 cut(s)	231, 269, 317, 471, 610
BslFI	GGGAC	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	38, 172
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	5, 149, 268
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	445, 608
Bsp143I	GATC	2 cut(s)	352, 369
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	198, 304
BspANI	GGCC	3 cut(s)	5, 149, 268
BspLI	GGNNCC	3 cut(s)	244, 403, 605
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	9, 559
BsrI	ACTGG	2 cut(s)	503, 584
BssECI	CCNNGG	3 cut(s)	144, 459, 608
BssMI	GATC	2 cut(s)	352, 369
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	343, 349, 543, 563
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	22, 198, 223
BstDEI	CTNAG	1 cut(s)	668
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	2 cut(s)	355, 372
BstMAI	GTCTC	2 cut(s)	38, 172
BstMBI	GATC	2 cut(s)	352, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 310
BstPAI	GACNNNNGTC	2 cut(s)	561, 617
BstSCI	CCNGG	5 cut(s)	230, 268, 316, 469, 608
BstV1I	GCAGC	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	5, 149, 268
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	22, 198, 223
Cfr13I	GGNCC	4 cut(s)	266, 402, 412, 612
CpoI	CGGWCCG	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	275
CspI	CGGWCCG	1 cut(s)	612
CviAII	CATG	4 cut(s)	145, 359, 390, 567
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	668
DpnI	GATC	2 cut(s)	354, 371
DpnII	GATC	2 cut(s)	352, 369
EaeI	YGGCCR	2 cut(s)	3, 147
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	402, 412, 612
EcoRI	GAATTC	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	148, 362, 393, 570
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	4 cut(s)	144, 358, 389, 566
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	2 cut(s)	352, 369
Fnu4HI	GCNGC	2 cut(s)	305, 489
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	305, 489
FspBI	CTAG	2 cut(s)	51, 453
GluI	GCNGC	2 cut(s)	305, 489
GsuI	CTGGAG	2 cut(s)	567, 668
HaeIII	GGCC	3 cut(s)	5, 149, 268
HapII	CCGG	5 cut(s)	231, 269, 317, 471, 610
Hin1II	CATG	4 cut(s)	148, 362, 393, 570
HpaII	CCGG	5 cut(s)	231, 269, 317, 471, 610
HphI	GGTGA	5 cut(s)	28, 337, 347, 485, 518
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	3 cut(s)	125, 463, 713
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	5 cut(s)	142, 391, 503, 594, 632
HpyCH4III	ACNGT	4 cut(s)	343, 349, 543, 563
HpyCH4V	TGCA	6 cut(s)	221, 293, 491, 539, 552, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 310
HpyF3I	CTNAG	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	148, 362, 393, 570
Ksp22I	TGATCA	2 cut(s)	352, 369
Kzo9I	GATC	2 cut(s)	352, 369
LmnI	GCTCC	4 cut(s)	242, 310, 448, 603
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	51, 453
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	354, 371
MboI	GATC	2 cut(s)	352, 369
MboII	GAAGA	3 cut(s)	81, 168, 171
MhlI	GDGCHC	2 cut(s)	445, 608
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	3 cut(s)	119, 701, 707
MluNI	TGGCCA	2 cut(s)	5, 149
MnlI	CCTC	7 cut(s)	97, 112, 116, 151, 355, 469, 568
Mox20I	TGGCCA	2 cut(s)	5, 149
MscI	TGGCCA	2 cut(s)	5, 149
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	5 cut(s)	231, 269, 317, 471, 610
MspR9I	CCNGG	5 cut(s)	232, 270, 318, 471, 610
MwoI	GCNNNNNNNGC	2 cut(s)	11, 310
NciI	CCSGG	5 cut(s)	232, 270, 318, 471, 610
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	352, 369
NlaIII	CATG	4 cut(s)	148, 362, 393, 570
NlaIV	GGNNCC	3 cut(s)	244, 403, 605
NmuCI	GTSAC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	306, 490
PshAI	GACNNNNGTC	2 cut(s)	561, 617
PspN4I	GGNNCC	3 cut(s)	244, 403, 605
PspPI	GGNCC	4 cut(s)	266, 402, 412, 612
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
Rsr2I	CGGWCCG	1 cut(s)	612
RsrII	CGGWCCG	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	2 cut(s)	305, 489
Sau3AI	GATC	2 cut(s)	352, 369
Sau96I	GGNCC	4 cut(s)	266, 402, 412, 612
ScaI	AGTACT	1 cut(s)	276
ScrFI	CCNGG	5 cut(s)	232, 270, 318, 471, 610
SduI	GDGCHC	2 cut(s)	445, 608
SetI	ASST	8 cut(s)	26, 134, 220, 255, 378, 461, 514, 536
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	3 cut(s)	402, 412, 612
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	119, 701, 707
SsiI	CCGC	2 cut(s)	198, 304
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	51, 453
StyD4I	CCNGG	5 cut(s)	230, 268, 316, 469, 608
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	4 cut(s)	343, 349, 543, 563
TaqI	TCGA	1 cut(s)	481
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	3 cut(s)	119, 701, 707
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	16, 171, 222
TspGWI	ACGGA	1 cut(s)	425
VpaK11BI	GGWCC	3 cut(s)	402, 412, 612
XapI	RAATTY	1 cut(s)	707
XbaI	TCTAGA	1 cut(s)	452
XspI	CTAG	2 cut(s)	51, 453
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.