Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008000.1

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

10355 .. 11036

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008000.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggccaccattgctattgccagcttcattggtctcaccactcccatcactagaactcaaggactttctgggcatttcccaaatccctcttcccctttctcctccctcaaatattcccaattcagaaccaccttctctccctccatggccaccaccccaatccaagtctctgcttcttcttcatcatcatcatcgcccgccattgatgaaaagaaaggtgcaggcttttccggggttgtgggagccgatgacctgttgattgttgggccgggagtacttgggcgattagttgcagagaaatggcggcaggagcatccgggttgtgaaatatatgggcaaacagtcaccgttgatcaccatgaggagttgatcaaggtgggtatcaatccatgtttgaaggggaccaaaacggaccataagtttcctaatgtcattttctgtgctccaccatctagaacctcggattatcccggtgatgttcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.09

Weight (kDa)

7.77

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	198, 304
AcoI	YGGCCR	2 cut(s)	3, 147
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	38, 172
AoxI	GGCC	3 cut(s)	3, 147, 266
AspS9I	GGNCC	3 cut(s)	266, 402, 412
AsuC2I	CCSGG	4 cut(s)	232, 270, 318, 471
AsuHPI	GGTGA	4 cut(s)	28, 337, 347, 485
AvaII	GGWCC	2 cut(s)	402, 412
BalI	TGGCCA	2 cut(s)	5, 149
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	2 cut(s)	53, 457
BclI	TGATCA	2 cut(s)	352, 369
BcnI	CCSGG	4 cut(s)	232, 270, 318, 471
BcoDI	GTCTC	2 cut(s)	38, 172
BfaI	CTAG	2 cut(s)	51, 453
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	4 cut(s)	232, 270, 318, 471
Bme18I	GGWCC	2 cut(s)	402, 412
BmgT120I	GGNCC	3 cut(s)	266, 402, 412
BmiI	GGNNCC	2 cut(s)	244, 403
BmrFI	CCNGG	4 cut(s)	232, 270, 318, 471
BmsI	GCATC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	4 cut(s)	232, 270, 318, 471
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	144, 231, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse3DI	GCAATG	1 cut(s)	9
BseDI	CCNNGG	3 cut(s)	144, 231, 459
BseGI	GGATG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	91, 377
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	5, 149, 268
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	4 cut(s)	231, 269, 317, 471
BslFI	GGGAC	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	38, 172
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	5, 149, 268
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	352, 369
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	198, 304
BspANI	GGCC	3 cut(s)	5, 149, 268
BspLI	GGNNCC	2 cut(s)	244, 403
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	144, 231, 459
BssMI	GATC	2 cut(s)	352, 369
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	343, 349
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	22, 198, 223
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	2 cut(s)	355, 372
BstMAI	GTCTC	2 cut(s)	38, 172
BstMBI	GATC	2 cut(s)	352, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 310
BstSCI	CCNGG	4 cut(s)	230, 268, 316, 469
BsuRI	GGCC	3 cut(s)	5, 149, 268
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	22, 198, 223
Cfr13I	GGNCC	3 cut(s)	266, 402, 412
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	3 cut(s)	145, 359, 390
CviJI	RGCY	6 cut(s)	5, 24, 149, 225, 245, 268
CviKI_1	RGCY	6 cut(s)	5, 24, 149, 225, 245, 268
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	2 cut(s)	354, 371
DpnII	GATC	2 cut(s)	352, 369
EaeI	YGGCCR	2 cut(s)	3, 147
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	402, 412
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	148, 362, 393
FaiI	YATR	6 cut(s)	146, 331, 333, 360, 391, 417
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	144, 358, 389
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	2 cut(s)	352, 369
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	2 cut(s)	51, 453
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	5, 149, 268
HapII	CCGG	4 cut(s)	231, 269, 317, 471
Hin1II	CATG	3 cut(s)	148, 362, 393
HpaII	CCGG	4 cut(s)	231, 269, 317, 471
HphI	GGTGA	4 cut(s)	28, 337, 347, 485
Hpy188I	TCNGA	2 cut(s)	125, 463
Hpy188III	TCNNGA	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	142, 391
HpyCH4III	ACNGT	2 cut(s)	343, 349
HpyCH4V	TGCA	2 cut(s)	221, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 310
Hsp92II	CATG	3 cut(s)	148, 362, 393
Ksp22I	TGATCA	2 cut(s)	352, 369
Kzo9I	GATC	2 cut(s)	352, 369
LmnI	GCTCC	3 cut(s)	242, 310, 448
LpnPI	CCDG	8 cut(s)	34, 54, 207, 244, 266, 282, 293, 330
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	51, 453
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	354, 371
MboI	GATC	2 cut(s)	352, 369
MboII	GAAGA	3 cut(s)	81, 168, 171
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	1 cut(s)	119
MluNI	TGGCCA	2 cut(s)	5, 149
MnlI	CCTC	6 cut(s)	97, 112, 116, 151, 355, 469
Mox20I	TGGCCA	2 cut(s)	5, 149
MscI	TGGCCA	2 cut(s)	5, 149
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	4 cut(s)	231, 269, 317, 471
MspR9I	CCNGG	4 cut(s)	232, 270, 318, 471
MwoI	GCNNNNNNNGC	2 cut(s)	11, 310
NciI	CCSGG	4 cut(s)	232, 270, 318, 471
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	352, 369
NlaIII	CATG	3 cut(s)	148, 362, 393
NlaIV	GGNNCC	2 cut(s)	244, 403
NmuCI	GTSAC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	244, 403
PspPI	GGNCC	3 cut(s)	266, 402, 412
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	352, 369
Sau96I	GGNCC	3 cut(s)	266, 402, 412
ScaI	AGTACT	1 cut(s)	276
ScrFI	CCNGG	4 cut(s)	232, 270, 318, 471
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	6 cut(s)	26, 134, 220, 255, 378, 461
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	2 cut(s)	402, 412
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	198, 304
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	51, 453
StyD4I	CCNGG	4 cut(s)	230, 268, 316, 469
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	343, 349
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	16, 171, 222
TspGWI	ACGGA	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	402, 412
XbaI	TCTAGA	1 cut(s)	452
XspI	CTAG	2 cut(s)	51, 453
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.