Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

21100489 .. 21103988

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATCATCCACACTCTGACCACGTTAACCATCCTCATTGGCTGTGACAAACGCCCCATAACCAATCCGACATTTCGTCTCGGTTACCAAATCCTCAGTCTTCAACACAGTTCGAGGAGAATGTCCACCATTGCTGTTGCTAGCTTCACTGGTCTCACCAGAACTGAAGGACTTTCTGGGCATTTCCCAAATCTCTCCTACCCTTTCTCCTCCCTCAAATACACCCAATTCAGAGCCACCTTATCTGCCTCCATGGCCACCCCAATCCAAGTCTCCGCTTCTTCCTCCTCATCATCATCATCCACCATCGATGAAAAGAAAGGTGCAGGGTTTGCTGGGATTGTGGGAGCTAATGACCTGTTGATTGTTGGGCCCGGAGTACTTGGGCGGTTAGTTGCAGAGAAATGGCGGGAGGAGCATCCAGGTTGTGAAATATATGGGCAAACGGTGACTGTTGATCACCATGAGGAGTTGATCAATGTGGGGATTAATCCATGTTTGAAGGGGACCAAAACGGACCTTAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCGGATTATCCCGGTGATGTTCGAGTGGCTGCATTGAAATGGAATGGTGAAGGTTCTTTCTTGTTTACATCAAGCTCTGCACCGTATGATTGCAATGACAACAGTCCTTGTGATGAGGACACTCCAGTAGTGCCAATAGGAAGGAGCCCCAGGACCGATGTCCTTCTTCATGCAGAAAAAGTAGTGTTAGAGTTTGGTGGCGTTGTTCTTAGATTGGCAGGGCTTTATAAAGCAGATAGAGGTGCTCATGTTTACTGGTTATCGAAGGGGACTGTAGACACAAATCCAGATCACATTCTGAATCTCATACATTACGAGGATGCAGCTTCCCTATCTGTTGCAATCTTGAAGAAGCGATTACGTAATCGGATTCTCTTGGGTTGTGACAATCATCCATTGTCCAGGAAAGAAGTGATGGATTTGGTTAATAAAAGTGGGAAATTTACCAAAGTGTTTGACAGGTTTACAGGAACTACGGATCCACTGGGTAAGAGATTAAACAACTCAAAAACTCGTGCAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCGCTCAATTCCTTGAGAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.5

Weight (kDa)

8.73

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
AccI	GTMKAC	1 cut(s)	840
AciI	CCGC	3 cut(s)	276, 388, 409
AclWI	GGATC	2 cut(s)	1037, 1050
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	1004
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	381
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	104, 502, 601, 913
AhdI	GACNNNNNGTC	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	421, 713, 965
AloI	GAACNNNNNNTCC	2 cut(s)	1027, 1059
AluBI	AGCT	4 cut(s)	144, 350, 639, 890
AluI	AGCT	4 cut(s)	144, 350, 639, 890
Alw21I	GWGCWC	2 cut(s)	550, 811
Alw26I	GTCTC	3 cut(s)	83, 158, 277
AlwI	GGATC	2 cut(s)	1037, 1050
AoxI	GGCC	2 cut(s)	255, 371
ApaI	GGGCCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	593, 887
ApoI	RAATTY	1 cut(s)	1004
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AseI	ATTAAT	1 cut(s)	489
AspS9I	GGNCC	5 cut(s)	371, 372, 507, 517, 717
AsuC2I	CCSGG	2 cut(s)	375, 576
AsuHPI	GGTGA	5 cut(s)	148, 452, 460, 590, 623
AsuNHI	GCTAGC	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	507, 517, 717
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	1042
BanII	GRGCYC	2 cut(s)	375, 713
BauI	CACGAG	1 cut(s)	1077
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	550, 811
BbvI	GCAGC	2 cut(s)	580, 899
BccI	CCATC	4 cut(s)	38, 314, 562, 973
BciT130I	CCWGG	3 cut(s)	423, 715, 967
BclI	TGATCA	3 cut(s)	3, 457, 474
BcnI	CCSGG	2 cut(s)	375, 576
BcoDI	GTCTC	3 cut(s)	83, 158, 277
BfaI	CTAG	2 cut(s)	141, 558
BfmI	CTRYAG	1 cut(s)	837
BfrI	CTTAAG	1 cut(s)	521
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	594, 888
BlsI	GCNGC	2 cut(s)	595, 889
BmcAI	AGTACT	1 cut(s)	381
Bme1390I	CCNGG	5 cut(s)	375, 423, 576, 715, 967
Bme18I	GGWCC	3 cut(s)	507, 517, 717
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmgT120I	GGNCC	5 cut(s)	371, 372, 507, 517, 717
BmiI	GGNNCC	5 cut(s)	373, 508, 710, 1044, 1098
BmrFI	CCNGG	5 cut(s)	375, 423, 576, 715, 967
BmrI	ACTGGG	2 cut(s)	1058, 1104
BmsI	GCATC	2 cut(s)	427, 874
BmtI	GCTAGC	1 cut(s)	144
BmuI	ACTGGG	2 cut(s)	1058, 1104
BoxI	GACNNNNGTC	2 cut(s)	666, 722
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	672
BpuMI	CCSGG	2 cut(s)	375, 576
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	926
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	252, 564, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse1I	ACTGG	5 cut(s)	154, 689, 824, 1053, 1110
Bse3DI	GCAATG	2 cut(s)	129, 664
BseBI	CCWGG	3 cut(s)	423, 715, 967
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	252, 564, 713
BseGI	GGATG	6 cut(s)	6, 30, 299, 418, 889, 955
BseMI	GCAATG	2 cut(s)	129, 664
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	5 cut(s)	154, 689, 824, 1053, 1110
BseRI	GAGGAG	5 cut(s)	130, 199, 277, 428, 482
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	580, 899
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	3 cut(s)	345, 627, 1101
BshFI	GGCC	2 cut(s)	257, 373
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	550, 811
BsiSI	CCGG	2 cut(s)	375, 576
BslFI	GGGAC	2 cut(s)	520, 847
BsmAI	GTCTC	3 cut(s)	83, 158, 277
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	520, 847
BsnI	GGCC	2 cut(s)	257, 373
Bso31I	GGTCTC	1 cut(s)	158
Bsp120I	GGGCCC	1 cut(s)	371
Bsp1286I	GDGCHC	4 cut(s)	375, 550, 713, 811
Bsp143I	GATC	5 cut(s)	3, 457, 474, 853, 1042
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	276, 388, 409
BspANI	GGCC	2 cut(s)	257, 373
BspCNI	CTCAG	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	5 cut(s)	373, 508, 710, 1044, 1098
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	1037, 1050
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	129, 664
BsrI	ACTGG	5 cut(s)	154, 689, 824, 1053, 1110
BssECI	CCNNGG	3 cut(s)	252, 564, 713
BssMI	GATC	5 cut(s)	3, 457, 474, 853, 1042
BssSI	CACGAG	1 cut(s)	1077
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	1077
Bst2UI	CCWGG	3 cut(s)	423, 715, 967
Bst4CI	ACNGT	6 cut(s)	110, 448, 454, 648, 668, 838
BstAFI	CTTAAG	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	926
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	95, 773
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	6 cut(s)	6, 30, 299, 418, 889, 955
BstKTI	GATC	5 cut(s)	6, 460, 477, 856, 1045
BstMAI	GTCTC	3 cut(s)	83, 158, 277
BstMBI	GATC	5 cut(s)	3, 457, 474, 853, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 332, 415
BstNI	CCWGG	3 cut(s)	423, 715, 967
BstPAI	GACNNNNGTC	2 cut(s)	666, 722
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	5 cut(s)	373, 421, 574, 713, 965
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	926
BstV1I	GCAGC	2 cut(s)	580, 899
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	1042
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	257, 373
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	6 cut(s)	6, 30, 299, 418, 889, 955
BtsIMutI	CAGTG	2 cut(s)	147, 1046
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	5 cut(s)	371, 372, 507, 517, 717
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	5 cut(s)	253, 464, 495, 734, 812
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	95, 773
DpnI	GATC	5 cut(s)	5, 459, 476, 855, 1044
DpnII	GATC	5 cut(s)	3, 457, 474, 853, 1042
DriI	GACNNNNNGTC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	375, 713
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	3 cut(s)	507, 517, 717
Eco57I	CTGAAG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	3 cut(s)	421, 713, 965
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	375, 713
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	5 cut(s)	256, 467, 498, 737, 815
FaqI	GGGAC	2 cut(s)	520, 847
FatI	CATG	5 cut(s)	252, 463, 494, 733, 811
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	3 cut(s)	3, 457, 474
FblI	GTMKAC	1 cut(s)	840
Fnu4HI	GCNGC	2 cut(s)	594, 888
FokI	GGATG	5 cut(s)	17, 286, 405, 896, 942
FriOI	GRGCYC	2 cut(s)	375, 713
Fsp4HI	GCNGC	2 cut(s)	594, 888
FspBI	CTAG	2 cut(s)	141, 558
GluI	GCNGC	2 cut(s)	594, 888
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	2 cut(s)	257, 373
HapII	CCGG	2 cut(s)	375, 576
Hin1II	CATG	5 cut(s)	256, 467, 498, 737, 815
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	865, 934, 1132
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	2 cut(s)	375, 576
HphI	GGTGA	5 cut(s)	148, 452, 460, 590, 623
Hpy166II	GTNNAC	6 cut(s)	27, 126, 630, 817, 841, 1029
Hpy188I	TCNGA	7 cut(s)	18, 69, 233, 568, 864, 933, 1139
Hpy188III	TCNNGA	3 cut(s)	558, 851, 910
Hpy8I	GTNNAC	6 cut(s)	27, 126, 630, 817, 841, 1029
HpyAV	CCTTC	6 cut(s)	161, 496, 608, 699, 737, 823
HpyCH4III	ACNGT	6 cut(s)	110, 448, 454, 648, 668, 838
HpyCH4IV	ACGT	2 cut(s)	23, 925
HpyCH4V	TGCA	9 cut(s)	326, 398, 596, 644, 657, 737, 887, 905, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 332, 415
HpyF3I	CTNAG	2 cut(s)	95, 773
HpySE526I	ACGT	2 cut(s)	23, 925
Hsp92II	CATG	5 cut(s)	256, 467, 498, 737, 815
Ksp22I	TGATCA	3 cut(s)	3, 457, 474
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	3, 457, 474, 853, 1042
LmnI	GCTCC	4 cut(s)	347, 415, 553, 708
Lsp1109I	GCAGC	2 cut(s)	580, 899
LweI	GCATC	2 cut(s)	427, 874
MaeI	CTAG	2 cut(s)	141, 558
MaeII	ACGT	2 cut(s)	23, 925
MaeIII	GTNAC	4 cut(s)	44, 83, 448, 947
MalI	GATC	5 cut(s)	5, 459, 476, 855, 1044
MboI	GATC	5 cut(s)	3, 457, 474, 853, 1042
MboII	GAAGA	4 cut(s)	92, 273, 722, 925
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	4 cut(s)	375, 550, 713, 811
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	3 cut(s)	227, 1004, 1121
MluNI	TGGCCA	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	92
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	5 cut(s)	26, 489, 522, 990, 1061
MslI	CAYNNNNRTG	1 cut(s)	601
Msp20I	TGGCCA	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	2 cut(s)	375, 576
MspR9I	CCNGG	5 cut(s)	375, 423, 576, 715, 967
MvaI	CCWGG	3 cut(s)	423, 715, 967
MwoI	GCNNNNNNNGC	3 cut(s)	254, 332, 415
NciI	CCSGG	2 cut(s)	375, 576
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	5 cut(s)	3, 457, 474, 853, 1042
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	5 cut(s)	256, 467, 498, 737, 815
NlaIV	GGNNCC	5 cut(s)	373, 508, 710, 1044, 1098
NmuCI	GTSAC	3 cut(s)	44, 448, 947
PfeI	GAWTC	2 cut(s)	865, 934
PfoI	TCCNGGA	1 cut(s)	965
PkrI	GCNGC	2 cut(s)	595, 889
Ppu21I	YACGTR	1 cut(s)	926
PshAI	GACNNNNGTC	2 cut(s)	666, 722
PshBI	ATTAAT	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	421, 713, 965
PspEI	GGTNACC	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	3 cut(s)	421, 713, 965
PspN4I	GGNNCC	5 cut(s)	373, 508, 710, 1044, 1098
PspOMI	GGGCCC	1 cut(s)	371
PspPI	GGNCC	5 cut(s)	371, 372, 507, 517, 717
PsuI	RGATCY	1 cut(s)	1042
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	601
SaqAI	TTAA	5 cut(s)	26, 489, 522, 990, 1061
SatI	GCNGC	2 cut(s)	594, 888
Sau3AI	GATC	5 cut(s)	3, 457, 474, 853, 1042
Sau96I	GGNCC	5 cut(s)	371, 372, 507, 517, 717
ScaI	AGTACT	1 cut(s)	381
ScrFI	CCNGG	5 cut(s)	375, 423, 576, 715, 967
SduI	GDGCHC	4 cut(s)	375, 550, 713, 811
SfaNI	GCATC	2 cut(s)	427, 874
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	3 cut(s)	507, 517, 717
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	2 cut(s)	521, 1127
SmoI	CTYRAG	2 cut(s)	521, 1127
SnaBI	TACGTA	1 cut(s)	926
Sse9I	AATT	3 cut(s)	227, 1004, 1121
SsiI	CCGC	3 cut(s)	276, 388, 409
SspMI	CTAG	2 cut(s)	141, 558
StyD4I	CCNGG	5 cut(s)	373, 421, 574, 713, 965
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	6 cut(s)	110, 448, 454, 648, 668, 838
TaiI	ACGT	2 cut(s)	26, 928
TaqI	TCGA	4 cut(s)	113, 309, 586, 827
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	3 cut(s)	227, 1004, 1121
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	865, 934
Tru1I	TTAA	5 cut(s)	26, 489, 522, 990, 1061
Tru9I	TTAA	5 cut(s)	26, 489, 522, 990, 1061
TscAI	CASTG	2 cut(s)	154, 1053
TseFI	GTSAC	3 cut(s)	44, 448, 947
TseI	GCWGC	2 cut(s)	593, 887
Tsp45I	GTSAC	3 cut(s)	44, 448, 947
TspDTI	ATGAA	2 cut(s)	327, 722
TspGWI	ACGGA	2 cut(s)	530, 1055
TspRI	CASTG	2 cut(s)	154, 1053
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	507, 517, 717
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	1 cut(s)	1004
XbaI	TCTAGA	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	840
XspI	CTAG	2 cut(s)	141, 558
ZrmI	AGTACT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.