Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

49072273 .. 49075750

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCACCATTGCTATTGCTAGCTTCATTGGTCTCACCACTCCCATCACTAGAACTCAAGGACTTTCTGGGCATTTCCCAAATCCCTCTTCCCCTTTCTCCTCCCTCAAACATTCCCAATATAGAACCACCTTCTCTCCCTCCATGGCCACCACCCCAATCCAAGTCTCTGCTTCTTCTTCTTCATCATCATCGCCCGCCATTGATGAAAAGAAAGGTGCAGGCTTTTCCGGGATTGTGGGAGCCGATGACCTGTTGATTGTTGGGCCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGCAGGAGCATCCAGGTTGTGAAATATATGGGCAAACAGTCACCGTTGATCACCATGAGGAGTTGATCAAGGTGGGTATCAATCCATGCTTGAAGGGGACCAAAAGGGACCATAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCGGATTATCCCGGCGATGTTCGAGTGGCTGCATTGAACTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCTCTGCACCGTATGATTGCAATGACAACAGTCCATGTGATGAGGATACTCCAGTAGTGCCAATAGGAAGGAGCCCCAGGACCGATGTCCTTCTTAATGCAGAAAAAGTGGTGCTGGAGTTTGGTGAATATTTATACATTACTGGAAAGTTACTTGTTCTATTTCAAAGTGACCTTAACTATGTTTACAAAGCAGATAGAGGTGCCCATGTTTATTGGTTATCGAAGGGGACTGTAGACACAAATCCAGATCACGTTCTGAATCTCATACATTACGAGGATGCAGCTTCCCTATCTGTTGCAATCTTAAAGAAGCAATTACGTAACCGGATTCTCTTGGGTTGTGACAATCATCCATTGTCCAGGAAAGAAGTGATGGATTTGGTTAATAAAAGTGGGAAATTTACCAAAGTGTTTGAGAGCTTTACAGGAACTACTGATCCATTGGGAAAGCGATTAAACAACTCAAAAACTCGTGCAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCTCTCAATTCCTTGAGAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

38.87

Weight (kDa)

6.79

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	2 cut(s)	198, 304
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	2 cut(s)	3, 147
AcsI	RAATTY	1 cut(s)	932
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	397, 496, 698
AjnI	CCWGG	3 cut(s)	316, 608, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AloI	GAACNNNNNNTCC	2 cut(s)	955, 987
AluBI	AGCT	4 cut(s)	24, 534, 818, 954
AluI	AGCT	4 cut(s)	24, 534, 818, 954
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	38, 172
AlwI	GGATC	1 cut(s)	965
AoxI	GGCC	3 cut(s)	3, 147, 266
ApeKI	GCWGC	2 cut(s)	488, 815
ApoI	RAATTY	1 cut(s)	932
AspS9I	GGNCC	4 cut(s)	266, 402, 412, 612
AsuC2I	CCSGG	3 cut(s)	232, 270, 471
AsuHPI	GGTGA	5 cut(s)	28, 337, 347, 518, 668
AsuNHI	GCTAGC	1 cut(s)	20
AvaII	GGWCC	3 cut(s)	402, 412, 612
BaeGI	GKGCMC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BalI	TGGCCA	2 cut(s)	5, 149
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	475, 827
BccI	CCATC	3 cut(s)	53, 457, 901
BciT130I	CCWGG	3 cut(s)	318, 610, 895
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	2 cut(s)	352, 369
BcnI	CCSGG	3 cut(s)	232, 270, 471
BcoDI	GTCTC	2 cut(s)	38, 172
BfaI	CTAG	3 cut(s)	21, 51, 453
BfmI	CTRYAG	1 cut(s)	765
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	3 cut(s)	305, 489, 816
BlsI	GCNGC	3 cut(s)	306, 490, 817
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	6 cut(s)	232, 270, 318, 471, 610, 895
Bme18I	GGWCC	3 cut(s)	402, 412, 612
BmgT120I	GGNCC	4 cut(s)	266, 402, 412, 612
BmiI	GGNNCC	6 cut(s)	244, 403, 413, 605, 736, 1026
BmrFI	CCNGG	6 cut(s)	232, 270, 318, 471, 610, 895
BmrI	ACTGGG	1 cut(s)	1032
BmsI	GCATC	2 cut(s)	322, 802
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	1032
BoxI	GACNNNNGTC	2 cut(s)	561, 617
BpmI	CTGGAG	2 cut(s)	567, 668
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	3 cut(s)	232, 270, 471
BsaAI	YACGTR	1 cut(s)	854
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	144, 459, 608
BsaWI	WCCGGW	1 cut(s)	858
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse1I	ACTGG	4 cut(s)	503, 584, 679, 1038
Bse3DI	GCAATG	2 cut(s)	9, 559
BseBI	CCWGG	3 cut(s)	318, 610, 895
BseDI	CCNNGG	3 cut(s)	144, 459, 608
BseGI	GGATG	3 cut(s)	313, 817, 883
BseMI	GCAATG	2 cut(s)	9, 559
BseNI	ACTGG	4 cut(s)	503, 584, 679, 1038
BseRI	GAGGAG	2 cut(s)	91, 377
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	2 cut(s)	475, 827
BsgI	GTGCAG	3 cut(s)	240, 522, 1029
BshFI	GGCC	3 cut(s)	5, 149, 268
BshNI	GGYRCC	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	4 cut(s)	231, 269, 471, 859
BslFI	GGGAC	3 cut(s)	415, 425, 775
BsmAI	GTCTC	2 cut(s)	38, 172
BsmFI	GGGAC	3 cut(s)	415, 425, 775
BsnI	GGCC	3 cut(s)	5, 149, 268
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	445, 608, 739
Bsp143I	GATC	4 cut(s)	352, 369, 781, 970
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	198, 304
BspANI	GGCC	3 cut(s)	5, 149, 268
BspLI	GGNNCC	6 cut(s)	244, 403, 413, 605, 736, 1026
BspOI	GCTAGC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	965
BspT107I	GGYRCC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	9, 559
BsrI	ACTGG	4 cut(s)	503, 584, 679, 1038
BssECI	CCNNGG	3 cut(s)	144, 459, 608
BssMI	GATC	4 cut(s)	352, 369, 781, 970
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	3 cut(s)	318, 610, 895
Bst4CI	ACNGT	5 cut(s)	343, 349, 543, 563, 766
Bst6I	CTCTTC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	22, 198, 223
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	313, 817, 883
BstKTI	GATC	4 cut(s)	355, 372, 784, 973
BstMAI	GTCTC	2 cut(s)	38, 172
BstMBI	GATC	4 cut(s)	352, 369, 781, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 310
BstNI	CCWGG	3 cut(s)	318, 610, 895
BstPAI	GACNNNNGTC	2 cut(s)	561, 617
BstSCI	CCNGG	6 cut(s)	230, 268, 316, 469, 608, 893
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	739
BstSNI	TACGTA	1 cut(s)	854
BstV1I	GCAGC	2 cut(s)	475, 827
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	5, 149, 268
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	2 cut(s)	177, 489
BtsCI	GGATG	3 cut(s)	313, 817, 883
Cac8I	GCNNGC	3 cut(s)	22, 198, 223
Cfr13I	GGNCC	4 cut(s)	266, 402, 412, 612
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	5 cut(s)	145, 359, 390, 567, 740
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	4 cut(s)	354, 371, 783, 972
DpnII	GATC	4 cut(s)	352, 369, 781, 970
EaeI	YGGCCR	2 cut(s)	3, 147
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	402, 412, 612
EcoRII	CCWGG	3 cut(s)	316, 608, 893
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	148, 362, 393, 570, 743
FaqI	GGGAC	3 cut(s)	415, 425, 775
FatI	CATG	5 cut(s)	144, 358, 389, 566, 739
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	2 cut(s)	352, 369
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	3 cut(s)	305, 489, 816
FokI	GGATG	3 cut(s)	300, 824, 870
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	305, 489, 816
FspBI	CTAG	3 cut(s)	21, 51, 453
GluI	GCNGC	3 cut(s)	305, 489, 816
GsuI	CTGGAG	2 cut(s)	567, 668
HaeIII	GGCC	3 cut(s)	5, 149, 268
HapII	CCGG	4 cut(s)	231, 269, 471, 859
Hin1II	CATG	5 cut(s)	148, 362, 393, 570, 743
HinfI	GANTC	3 cut(s)	793, 862, 1060
HpaII	CCGG	4 cut(s)	231, 269, 471, 859
HphI	GGTGA	5 cut(s)	28, 337, 347, 518, 668
Hpy166II	GTNNAC	2 cut(s)	718, 769
Hpy188I	TCNGA	3 cut(s)	463, 792, 1067
Hpy188III	TCNNGA	2 cut(s)	453, 779
Hpy8I	GTNNAC	2 cut(s)	718, 769
HpyAV	CCTTC	6 cut(s)	142, 391, 503, 594, 632, 751
HpyCH4III	ACNGT	5 cut(s)	343, 349, 543, 563, 766
HpyCH4IV	ACGT	2 cut(s)	786, 853
HpyCH4V	TGCA	9 cut(s)	221, 293, 491, 539, 552, 632, 815, 833, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 310
HpySE526I	ACGT	2 cut(s)	786, 853
Hsp92II	CATG	5 cut(s)	148, 362, 393, 570, 743
Ksp22I	TGATCA	2 cut(s)	352, 369
Kzo9I	GATC	4 cut(s)	352, 369, 781, 970
LmnI	GCTCC	4 cut(s)	242, 310, 448, 603
Lsp1109I	GCAGC	2 cut(s)	475, 827
LweI	GCATC	2 cut(s)	322, 802
MaeI	CTAG	3 cut(s)	21, 51, 453
MaeII	ACGT	2 cut(s)	786, 853
MaeIII	GTNAC	5 cut(s)	343, 681, 701, 854, 875
MalI	GATC	4 cut(s)	354, 371, 783, 972
MboI	GATC	4 cut(s)	352, 369, 781, 970
MboII	GAAGA	4 cut(s)	81, 168, 171, 174
MhlI	GDGCHC	3 cut(s)	445, 608, 739
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	3 cut(s)	848, 932, 1049
MluNI	TGGCCA	2 cut(s)	5, 149
MnlI	CCTC	9 cut(s)	97, 112, 116, 151, 355, 469, 568, 725, 802
Mox20I	TGGCCA	2 cut(s)	5, 149
MscI	TGGCCA	2 cut(s)	5, 149
MseI	TTAA	5 cut(s)	627, 708, 839, 918, 989
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	4 cut(s)	231, 269, 471, 859
MspR9I	CCNGG	6 cut(s)	232, 270, 318, 471, 610, 895
MvaI	CCWGG	3 cut(s)	318, 610, 895
MwoI	GCNNNNNNNGC	2 cut(s)	11, 310
NciI	CCSGG	3 cut(s)	232, 270, 471
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	4 cut(s)	352, 369, 781, 970
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	148, 362, 393, 570, 743
NlaIV	GGNNCC	6 cut(s)	244, 403, 413, 605, 736, 1026
NmuCI	GTSAC	3 cut(s)	343, 701, 875
PfeI	GAWTC	2 cut(s)	793, 862
PfoI	TCCNGGA	2 cut(s)	230, 893
PkrI	GCNGC	3 cut(s)	306, 490, 817
Ppu21I	YACGTR	1 cut(s)	854
PshAI	GACNNNNGTC	2 cut(s)	561, 617
Psp6I	CCWGG	3 cut(s)	316, 608, 893
PspGI	CCWGG	3 cut(s)	316, 608, 893
PspN4I	GGNNCC	6 cut(s)	244, 403, 413, 605, 736, 1026
PspPI	GGNCC	4 cut(s)	266, 402, 412, 612
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	627, 708, 839, 918, 989
SatI	GCNGC	3 cut(s)	305, 489, 816
Sau3AI	GATC	4 cut(s)	352, 369, 781, 970
Sau96I	GGNCC	4 cut(s)	266, 402, 412, 612
ScaI	AGTACT	1 cut(s)	276
ScrFI	CCNGG	6 cut(s)	232, 270, 318, 471, 610, 895
SduI	GDGCHC	3 cut(s)	445, 608, 739
SfaNI	GCATC	2 cut(s)	322, 802
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	3 cut(s)	402, 412, 612
SmlI	CTYRAG	2 cut(s)	57, 1055
SmoI	CTYRAG	2 cut(s)	57, 1055
SnaBI	TACGTA	1 cut(s)	854
Sse9I	AATT	3 cut(s)	848, 932, 1049
SsiI	CCGC	2 cut(s)	198, 304
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	3 cut(s)	21, 51, 453
StyD4I	CCNGG	6 cut(s)	230, 268, 316, 469, 608, 893
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	343, 349, 543, 563, 766
TaiI	ACGT	2 cut(s)	789, 856
TaqI	TCGA	2 cut(s)	481, 755
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	3 cut(s)	848, 932, 1049
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	793, 862
Tru1I	TTAA	5 cut(s)	627, 708, 839, 918, 989
Tru9I	TTAA	5 cut(s)	627, 708, 839, 918, 989
TseFI	GTSAC	3 cut(s)	343, 701, 875
TseI	GCWGC	2 cut(s)	488, 815
Tsp45I	GTSAC	3 cut(s)	343, 701, 875
TspDTI	ATGAA	3 cut(s)	16, 174, 222
VpaK11BI	GGWCC	3 cut(s)	402, 412, 612
XapI	RAATTY	1 cut(s)	932
XbaI	TCTAGA	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	3 cut(s)	21, 51, 453
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.