Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007276

Physical Location & Seq

Genomic Coordinates Forward (+)

53088424 .. 53088917

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCACCACCCCAATCCAAGTCTCTGCTTCTTCTTCATCATCATCACCCACCATTGGTAAAGTTCCTCTCTTTAGTGCTCCTTATTGCGCAATGTTTGATGGGTTGGTTGGTGAAAGGGTAGATGAAAAGCAAGGTGCAGGCTTTGCTGGAATGGTGGGAGCCAATGACCTGTTGATTGTTGGGCCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGCAGGAGCATCCGGGTTGTCAAATATATGGGCAAACAGTGACCGTTGATCACCATGAGGAGTTGATCAAGGTGGGTATTAATCCATGTTTGAAGGGAATCAAAATGGACCATAAGTTTCCTAATGTCATTTTCCGTGCTCCACCATCTAGAACCTCCGATTATCGCGATGATGTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.47

Weight (kDa)

6.89

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39080
fragaria_vesca	FvH4_4g17200 FvH4_4g17200
malus_domestica	MD13G1173800.v1.1 MD16G1174800.v1.1
prunus_persica	Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1 Prupe.1G142000_v2.0.a1
pyrus_communis	pycom13g14950
rosa_chinensis	RchiOBHm_Chr4g0421021
rosa_laevigata	RLG00000007714
rosa_multiflora	Rmu_sc0006442.1_g000002 Rmu_sc0008000.1_g000007 Rmu_sc0025888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363360
rosa_rugosa	Rorug04G0167600 Rorug04G0167700
rosa_samantha	Rh4AG229100 Rh4AG229200 Rh4CG243700 Rh4DG227600
rosa_wichuraiana	Rw4G019810 Rw4G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	91
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	316
Alw21I	GWGCWC	2 cut(s)	82, 364
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	2 cut(s)	3, 185
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	185, 331
AsuC2I	CCSGG	2 cut(s)	189, 237
AsuHPI	GGTGA	3 cut(s)	39, 125, 266
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	82, 364
BccI	CCATC	2 cut(s)	95, 376
BclI	TGATCA	2 cut(s)	271, 288
BcnI	CCSGG	2 cut(s)	189, 237
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	189, 237
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	185, 331
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	189, 237
BmsI	GCATC	1 cut(s)	241
BpuMI	CCSGG	2 cut(s)	189, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	5, 187
BsiHKAI	GWGCWC	2 cut(s)	82, 364
BsiSI	CCGG	2 cut(s)	188, 236
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	5, 187
Bsp1286I	GDGCHC	2 cut(s)	82, 364
Bsp143I	GATC	2 cut(s)	271, 288
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	2 cut(s)	5, 187
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	99
BssMI	GATC	2 cut(s)	271, 288
Bst4CI	ACNGT	2 cut(s)	262, 268
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	274, 291
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	2 cut(s)	271, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 229
BstSCI	CCNGG	2 cut(s)	187, 235
BstUI	CGCG	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	5, 187
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	185, 331
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	278, 309
CviJI	RGCY	4 cut(s)	5, 144, 164, 187
CviKI_1	RGCY	4 cut(s)	5, 144, 164, 187
CviQI	GTAC	1 cut(s)	194
DpnI	GATC	2 cut(s)	273, 290
DpnII	GATC	2 cut(s)	271, 288
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	331
FaeI	CATG	2 cut(s)	281, 312
FaiI	YATR	5 cut(s)	250, 252, 279, 310, 336
FatI	CATG	2 cut(s)	277, 308
FbaI	TGATCA	2 cut(s)	271, 288
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	91
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	5, 187
HapII	CCGG	2 cut(s)	188, 236
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	281, 312
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	2 cut(s)	188, 236
HphI	GGTGA	3 cut(s)	39, 125, 266
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	372, 389
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	262, 268
HpyCH4V	TGCA	2 cut(s)	140, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 229
Hsp92II	CATG	2 cut(s)	281, 312
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	2 cut(s)	271, 288
Kzo9I	GATC	2 cut(s)	271, 288
LmnI	GCTCC	4 cut(s)	85, 161, 229, 367
LpnPI	CCDG	6 cut(s)	126, 135, 185, 201, 212, 249
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	273, 290
MboI	GATC	2 cut(s)	271, 288
MboII	GAAGA	2 cut(s)	24, 27
MhlI	GDGCHC	2 cut(s)	82, 364
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	78, 274, 388
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	188, 236
MspR9I	CCNGG	2 cut(s)	189, 237
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	146, 229
NciI	CCSGG	2 cut(s)	189, 237
NdeII	GATC	2 cut(s)	271, 288
NlaIII	CATG	2 cut(s)	281, 312
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	390
NsbI	TGCGCA	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	185, 331
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	271, 288
Sau96I	GGNCC	2 cut(s)	185, 331
ScaI	AGTACT	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	189, 237
SduI	GDGCHC	2 cut(s)	82, 364
SetI	ASST	4 cut(s)	139, 174, 297, 380
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	331
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	187, 235
TaaI	ACNGT	2 cut(s)	262, 268
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	27, 141
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	303
XbaI	TCTAGA	1 cut(s)	371
XspI	CTAG	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.