AT2G39400

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006108
Physical Location & Seq
Forward (+)
16452612 .. 16455001
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39400.2

Sequence Viewer

Length: 936 bp
ATGGTTATGTATGAAGAGGATTTTGTGTTGAACTCACGAGGCATGAAGTTGTTCACTTGTGTATGGAAACCAGTGAAGCAAGAACCAAAGGCATTGCTCTTCCTCTGCCATGGCTACGCTATGGAGTCCAGCATCACCATGAACAGCGCAGCCACGAGGTTAGCCAATGCCGGTTTTGCCGTATATGGAATGGACTATGAAGGACATGGAAAATCTGAGGGTCTAAATGGTTACATCAGTAACTTTGATGATCTCGTTGATGATGTCTCTAATCATTATTCTACAATTTGTGAGAGGGAAGAGAACAAGGGGAAGATGAGGTTCCTACTTGGAGAATCCATGGGAGGAGCAGTTGTGTTGCTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTAGCACCCATGTGTAAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTATCAAGTTAGCCAAGTTTATTCCAACGTGGAAAATAGTTCCAGGAAATGATATTATTGACATTGCAATTAAAGAACCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAAGGCCGGCCTCGCCTCAACACCGCCTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAAGAATCTTCACCAGGTATCAATTCCTTTCATTGTTCTTCACGGAGAAGATGATAAAGTGACGGATAAAAGCATAAGCAAAATGTTATACGAAGTGGCTTCAAGCTCGGACAAGACATTCAAGCTGTACCCCAAAATGTGGCATGCTTTGTTGTATGGGGAAACTAATGAAAATTCAGAAATTGTGTTTGGTGATATCATAAACTGGTTGGAAGATAGAGCCACAGATTCGAACGGAGGGTTAGAGAGTCAGCTAAAACATAAGCATGATGGATTCTTGAAGCATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

311

Amino Acids

35.25

Weight (kDa)

6.42

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 27 - 221 2.5e-47 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 32 - 165 2.8e-12 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 34 - 151 1.5e-07 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 783
AciI CCGC 1 cut(s) 609
AcsI RAATTY 1 cut(s) 817
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 1 cut(s) 783
AgsI TTSAA 4 cut(s) 31, 747, 766, 925
AjnI CCWGG 2 cut(s) 508, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 816, 848
AleI CACNNNNGTG 1 cut(s) 415
AluBI AGCT 4 cut(s) 633, 750, 769, 898
AluI AGCT 4 cut(s) 633, 750, 769, 898
Alw26I GTCTC 1 cut(s) 271
AoxI GGCC 2 cut(s) 589, 593
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 149
AsuHPI GGTGA 4 cut(s) 127, 574, 647, 848
AsuII TTCGAA 1 cut(s) 875
BanI GGYRCC 1 cut(s) 395
BauI CACGAG 2 cut(s) 36, 154
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 908
BceAI ACGGC 2 cut(s) 164, 383
BciT130I CCWGG 2 cut(s) 510, 659
BcoDI GTCTC 1 cut(s) 271
BglII AGATCT 1 cut(s) 637
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 510, 659
BmiI GGNNCC 2 cut(s) 323, 397
BmrFI CCNGG 2 cut(s) 510, 659
BmsI GCATC 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 109, 339
BsaXI ACNNNNNCTCC 6 cut(s) 336, 339, 366, 369, 560, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse118I RCCGGY 2 cut(s) 170, 591
Bse1I ACTGG 3 cut(s) 71, 449, 854
Bse3DI GCAATG 2 cut(s) 92, 528
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 2 cut(s) 510, 659
BseDI CCNNGG 2 cut(s) 109, 339
BseGI GGATG 1 cut(s) 445
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMI GCAATG 2 cut(s) 92, 528
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 3 cut(s) 71, 449, 854
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 2 cut(s) 591, 595
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 2 cut(s) 171, 592
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 783
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 2 cut(s) 591, 595
Bsp119I TTCGAA 1 cut(s) 875
Bsp143I GATC 3 cut(s) 250, 456, 637
Bsp19I CCATGG 2 cut(s) 109, 339
BspACI CCGC 1 cut(s) 609
BspANI GGCC 2 cut(s) 591, 595
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 323, 397
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 875
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 92, 528
BsrFI RCCGGY 2 cut(s) 170, 591
BsrI ACTGG 3 cut(s) 71, 449, 854
BssAI RCCGGY 2 cut(s) 170, 591
BssECI CCNNGG 2 cut(s) 109, 339
BssMI GATC 3 cut(s) 250, 456, 637
BssSI CACGAG 2 cut(s) 36, 154
BssT1I CCWWGG 2 cut(s) 109, 339
Bst2BI CACGAG 2 cut(s) 36, 154
Bst2UI CCWGG 2 cut(s) 510, 659
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 3 cut(s) 9, 104, 294
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 2 cut(s) 593, 789
BstDEI CTNAG 3 cut(s) 216, 364, 634
BstDSI CCRYGG 2 cut(s) 109, 339
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 3 cut(s) 253, 459, 640
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 3 cut(s) 250, 456, 637
BstMWI GCNNNNNNNGC 3 cut(s) 176, 588, 597
BstNI CCWGG 2 cut(s) 510, 659
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 508, 657
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 2 cut(s) 591, 595
BtgI CCRYGG 2 cut(s) 109, 339
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 593, 789
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 2 cut(s) 170, 591
CsiI ACCWGGT 1 cut(s) 657
Csp6I GTAC 1 cut(s) 772
CviAII CATG 8 cut(s) 43, 110, 139, 206, 340, 415, 788, 911
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 3 cut(s) 216, 364, 634
DpnI GATC 3 cut(s) 252, 458, 639
DpnII GATC 3 cut(s) 250, 456, 637
Eam1104I CTCTTC 3 cut(s) 9, 104, 294
EarI CTCTTC 3 cut(s) 9, 104, 294
Eco130I CCWWGG 2 cut(s) 109, 339
Eco32I GATATC 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 508, 657
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 2 cut(s) 109, 339
ErhI CCWWGG 2 cut(s) 109, 339
FaeI CATG 8 cut(s) 46, 113, 142, 209, 343, 418, 791, 914
FaqI GGGAC 1 cut(s) 404
FatI CATG 8 cut(s) 42, 109, 138, 205, 339, 414, 787, 910
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 432
FseI GGCCGGCC 1 cut(s) 595
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 591, 595
HapII CCGG 2 cut(s) 171, 592
HhaI GCGC 1 cut(s) 149
Hin1II CATG 8 cut(s) 46, 113, 142, 209, 343, 418, 791, 914
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 6 cut(s) 125, 335, 649, 872, 892, 918
HpaII CCGG 2 cut(s) 171, 592
HphI GGTGA 4 cut(s) 127, 574, 647, 848
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 4 cut(s) 217, 554, 754, 823
Hpy188III TCNNGA 3 cut(s) 36, 641, 922
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 588, 597
HpyF3I CTNAG 3 cut(s) 216, 364, 634
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 8 cut(s) 46, 113, 142, 209, 343, 418, 791, 914
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 591
KroNI GCCGGC 1 cut(s) 593
Kzo9I GATC 3 cut(s) 250, 456, 637
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 141
MabI ACCWGGT 1 cut(s) 657
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 3 cut(s) 230, 239, 703
MalI GATC 3 cut(s) 252, 458, 639
MboI GATC 3 cut(s) 250, 456, 637
MboII GAAGA 9 cut(s) 26, 91, 311, 325, 644, 658, 674, 704, 869
MflI RGATCY 1 cut(s) 637
MluCI AATT 5 cut(s) 285, 534, 666, 817, 825
MlyI GAGTC 2 cut(s) 134, 901
MmeI TCCRAC 2 cut(s) 515, 834
MroNI GCCGGC 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 3 cut(s) 137, 415, 909
MspI CCGG 2 cut(s) 171, 592
MspR9I CCNGG 2 cut(s) 510, 659
MvaI CCWGG 2 cut(s) 510, 659
MwoI GCNNNNNNNGC 3 cut(s) 176, 588, 597
NaeI GCCGGC 1 cut(s) 593
NcoI CCATGG 2 cut(s) 109, 339
NdeII GATC 3 cut(s) 250, 456, 637
NgoMIV GCCGGC 1 cut(s) 591
NlaIII CATG 8 cut(s) 46, 113, 142, 209, 343, 418, 791, 914
NlaIV GGNNCC 2 cut(s) 323, 397
NmuCI GTSAC 1 cut(s) 703
NspI RCATGY 1 cut(s) 791
NspV TTCGAA 1 cut(s) 875
OliI CACNNNNGTG 1 cut(s) 415
PaeI GCATGC 1 cut(s) 791
PciSI GCTCTTC 1 cut(s) 104
PdiI GCCGGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 335, 649, 872, 918
PflMI CCANNNNNTGG 1 cut(s) 783
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 2 cut(s) 133, 900
PpsI GAGTC 2 cut(s) 133, 900
Psp6I CCWGG 2 cut(s) 508, 657
PspGI CCWGG 2 cut(s) 508, 657
PspN4I GGNNCC 2 cut(s) 323, 397
PsuI RGATCY 1 cut(s) 637
RigI GGCCGGCC 1 cut(s) 595
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
RseI CAYNNNNRTG 3 cut(s) 137, 415, 909
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 250, 456, 637
SchI GAGTC 2 cut(s) 134, 901
ScrFI CCNGG 2 cut(s) 510, 659
SexAI ACCWGGT 1 cut(s) 657
SfaNI GCATC 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 875
SmiMI CAYNNNNRTG 3 cut(s) 137, 415, 909
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SphI GCATGC 1 cut(s) 791
Sse9I AATT 5 cut(s) 285, 534, 666, 817, 825
SsiI CCGC 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 508, 657
StyI CCWWGG 2 cut(s) 109, 339
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 497
TaqI TCGA 1 cut(s) 875
TasI AATT 5 cut(s) 285, 534, 666, 817, 825
TfiI GAWTC 4 cut(s) 335, 649, 872, 918
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 6 cut(s) 27, 59, 155, 213, 664, 828
TspGWI ACGGA 3 cut(s) 702, 722, 894
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 783
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.