AT2G39420

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006108
Physical Location & Seq
Forward (+)
16460247 .. 16463220
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39420.1

Sequence Viewer

Length: 954 bp
ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGAATGAAACTGTTCACGTGCAAATGGGTACCAGCAAAGCAAGAGCCAAAGGCTTTAGTCTTTATTTGCCATGGATATGCAATGGAATGTAGCATCACCATGAACAGTACTGCGAGGAGGCTGGTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGGCATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACACAAGCATTTGCGAGAAAGAAGAGAATAAAGGGAAGATGAGGTTCTTGTTAGGAGAATCAATGGGAGGAGCAGTGCTTTTGTTGTTACACAGAAAGAAGCCTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCTGAAGAAATGAAACCAAGCCCTTTGGTAATTTCGATATTGGCCAAACTTAGTGGAGTGATACCTTCGTGGAAAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAAGCAGCCAGAAATCAGGAAACAGGTTAGGGAAAATCCCTACTGCTACAAGGGACGTCCACGTTTGAAGACTGCTTATGAGCTTTTGAGGGTTAGCACCGATCTCGAGAAGAGGCTTAATGAGGTTTCATTACCGTTCATAGTTTTGCACGGTGAAGACGATAAAGTCACAGATAAAGCGGTGAGTCGACAACTGTATGAAGTTGCATCTAGTTCGGACAAGACTTTCAAGTTGTACCCTGGGATGTGGCATGGTTTACTCTATGGAGAGACACCAGAGAATATCGAGACTGTTTTTGCTGACATCATTGGCTGGTTGGATAAGAAAGTTGCTGATGAAAGTGGAGGCTTTGAATCCGAGCTTAAACGTAAAAATGATGGTATTCCTTTGAAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

317

Amino Acids

35.7

Weight (kDa)

7.59

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 33 - 272 2.8e-69 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 38 - 167 2.1e-09 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 40 - 278 8.9e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 719
AatII GACGTC 1 cut(s) 613
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 742
AciI CCGC 2 cut(s) 197, 734
AcoI YGGCCR 2 cut(s) 486, 529
AcuI CTGAAG 1 cut(s) 468
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 610
AfaI GTAC 3 cut(s) 87, 166, 791
AfiI CCNNNNNNNGG 1 cut(s) 947
AgsI TTSAA 4 cut(s) 622, 784, 908, 946
AjnI CCWGG 2 cut(s) 526, 793
AluBI AGCT 2 cut(s) 637, 916
AluI AGCT 2 cut(s) 637, 916
Alw26I GTCTC 4 cut(s) 289, 539, 818, 836
Ama87I CYCGRG 2 cut(s) 54, 659
AoxI GGCC 2 cut(s) 486, 529
ApeKI GCWGC 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 68
Asp718I GGTACC 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 145, 193, 719, 748
AvaI CYCGRG 2 cut(s) 54, 659
BaeI ACNNNNGTAYC 2 cut(s) 497, 530
BalI TGGCCA 2 cut(s) 488, 531
BanI GGYRCC 1 cut(s) 85
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 629, 717
BbvI GCAGC 1 cut(s) 571
BccI CCATC 4 cut(s) 230, 276, 404, 926
BcgI CGANNNNNNTGC 4 cut(s) 640, 674, 750, 784
BciT130I CCWGG 2 cut(s) 528, 795
BcoDI GTCTC 4 cut(s) 289, 539, 818, 836
BfaI CTAG 1 cut(s) 765
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 528, 795
BmeT110I CYCGRG 2 cut(s) 54, 659
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 528, 795
BmsI GCATC 2 cut(s) 159, 770
BpiI GAAGAC 2 cut(s) 629, 717
BsaAI YACGTR 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 610
BsaJI CCNNGG 4 cut(s) 127, 526, 793, 794
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 947
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 528, 795
BseDI CCNNGG 4 cut(s) 127, 526, 793, 794
BseGI GGATG 3 cut(s) 415, 522, 804
BseLI CCNNNNNNNGG 1 cut(s) 947
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 413
BseRI GAGGAG 2 cut(s) 187, 378
BseXI GCAGC 1 cut(s) 571
BshFI GGCC 2 cut(s) 488, 531
BshNI GGYRCC 1 cut(s) 85
BsiHKCI CYCGRG 2 cut(s) 54, 659
BslFI GGGAC 2 cut(s) 239, 621
BslI CCNNNNNNNGG 1 cut(s) 947
BsmAI GTCTC 4 cut(s) 289, 539, 818, 836
BsmFI GGGAC 2 cut(s) 239, 621
BsnI GGCC 2 cut(s) 488, 531
BsoBI CYCGRG 2 cut(s) 54, 659
Bsp143I GATC 1 cut(s) 655
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 2 cut(s) 197, 734
BspANI GGCC 2 cut(s) 488, 531
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 4 cut(s) 127, 526, 793, 794
BssMI GATC 1 cut(s) 655
BssNI GRCGYC 1 cut(s) 610
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 528, 795
Bst4CI ACNGT 6 cut(s) 69, 164, 690, 707, 750, 847
Bst6I CTCTTC 3 cut(s) 27, 312, 659
BstACI GRCGYC 1 cut(s) 610
BstAPI GCANNNNNTGC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 242, 399, 494
BstDSI CCRYGG 1 cut(s) 127
BstENI CCTNNNNNAGG 1 cut(s) 945
BstF5I GGATG 3 cut(s) 415, 522, 804
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 4 cut(s) 289, 539, 818, 836
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 2 cut(s) 528, 795
BstSCI CCNGG 2 cut(s) 526, 793
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 2 cut(s) 629, 717
BsuRI GGCC 2 cut(s) 488, 531
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 415, 522, 804
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Csp6I GTAC 3 cut(s) 86, 165, 790
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 4 cut(s) 128, 157, 224, 806
CviQI GTAC 3 cut(s) 86, 165, 790
DdeI CTNAG 3 cut(s) 242, 399, 494
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
EaeI YGGCCR 2 cut(s) 486, 529
Eam1104I CTCTTC 3 cut(s) 27, 312, 659
EarI CTCTTC 3 cut(s) 27, 312, 659
Eco130I CCWWGG 1 cut(s) 127
Eco32I GATATC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 468
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 2 cut(s) 54, 659
EcoNI CCTNNNNNAGG 1 cut(s) 945
EcoRII CCWGG 2 cut(s) 526, 793
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 4 cut(s) 131, 160, 227, 809
FaqI GGGAC 2 cut(s) 239, 621
FatI CATG 4 cut(s) 127, 156, 223, 805
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 3 cut(s) 422, 509, 811
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 1 cut(s) 765
GluI GCNGC 1 cut(s) 560
HaeIII GGCC 2 cut(s) 488, 531
Hin1I GRCGYC 1 cut(s) 610
Hin1II CATG 4 cut(s) 131, 160, 227, 809
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 3 cut(s) 353, 739, 908
HphI GGTGA 4 cut(s) 145, 193, 719, 748
Hpy166II GTNNAC 4 cut(s) 72, 614, 743, 812
Hpy188I TCNGA 3 cut(s) 235, 772, 913
Hpy188III TCNNGA 5 cut(s) 46, 571, 659, 661, 841
Hpy8I GTNNAC 4 cut(s) 72, 614, 743, 812
HpyAV CCTTC 2 cut(s) 212, 519
HpyCH4III ACNGT 6 cut(s) 69, 164, 690, 707, 750, 847
HpyCH4IV ACGT 4 cut(s) 74, 610, 616, 922
HpyCH4V TGCA 4 cut(s) 78, 137, 703, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 3 cut(s) 242, 399, 494
HpySE526I ACGT 4 cut(s) 74, 610, 616, 922
Hsp92I GRCGYC 1 cut(s) 610
Hsp92II CATG 4 cut(s) 131, 160, 227, 809
KpnI GGTACC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 365, 433
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 2 cut(s) 159, 770
MaeI CTAG 1 cut(s) 765
MaeII ACGT 4 cut(s) 74, 610, 616, 922
MaeIII GTNAC 2 cut(s) 381, 721
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 7 cut(s) 44, 329, 343, 461, 634, 676, 722
MlsI TGGCCA 2 cut(s) 488, 531
MluCI AATT 2 cut(s) 207, 474
MluNI TGGCCA 2 cut(s) 488, 531
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 1 cut(s) 852
Mox20I TGGCCA 2 cut(s) 488, 531
MroXI GAANNNNTTC 1 cut(s) 68
MscI TGGCCA 2 cut(s) 488, 531
MseI TTAA 3 cut(s) 555, 672, 918
MslI CAYNNNNRTG 2 cut(s) 132, 155
Msp20I TGGCCA 2 cut(s) 488, 531
MspR9I CCNGG 2 cut(s) 528, 795
MvaI CCWGG 2 cut(s) 528, 795
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 127
NdeII GATC 1 cut(s) 655
NlaIII CATG 4 cut(s) 131, 160, 227, 809
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 721
PaeR7I CTCGAG 2 cut(s) 54, 659
PasI CCCWGGG 1 cut(s) 794
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 353, 908
PkrI GCNGC 1 cut(s) 561
PleI GAGTC 1 cut(s) 747
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
PpsI GAGTC 1 cut(s) 747
Ppu21I YACGTR 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 526, 793
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 2 cut(s) 526, 793
PspN4I GGNNCC 1 cut(s) 87
PspXI VCTCGAGB 1 cut(s) 54
RsaI GTAC 3 cut(s) 87, 166, 791
RsaNI GTAC 3 cut(s) 86, 165, 790
RseI CAYNNNNRTG 2 cut(s) 132, 155
SalI GTCGAC 1 cut(s) 741
SaqAI TTAA 3 cut(s) 555, 672, 918
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 1 cut(s) 655
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 528, 795
SfaNI GCATC 2 cut(s) 159, 770
Sfr274I CTCGAG 2 cut(s) 54, 659
SlaI CTCGAG 2 cut(s) 54, 659
SmiMI CAYNNNNRTG 2 cut(s) 132, 155
SmlI CTYRAG 2 cut(s) 54, 659
SmoI CTYRAG 2 cut(s) 54, 659
Sse9I AATT 2 cut(s) 207, 474
SsiI CCGC 2 cut(s) 197, 734
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 526, 793
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 6 cut(s) 69, 164, 690, 707, 750, 847
TaiI ACGT 4 cut(s) 77, 613, 619, 925
TaqI TCGA 5 cut(s) 55, 479, 660, 742, 840
TasI AATT 2 cut(s) 207, 474
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 2 cut(s) 353, 908
Tru1I TTAA 3 cut(s) 555, 672, 918
Tru9I TTAA 3 cut(s) 555, 672, 918
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 9 cut(s) 31, 45, 77, 173, 470, 672, 682, 768, 906
TspRI CASTG 1 cut(s) 375
XagI CCTNNNNNAGG 1 cut(s) 945
XhoI CTCGAG 2 cut(s) 54, 659
XmiI GTMKAC 1 cut(s) 742
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 765
ZraI GACGTC 1 cut(s) 611
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.