Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Forward (+)

56975740 .. 56977867

Gene Structure 2128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATGGATATGGAGAGTGTCAAATATGACGAGGAGTTTATCTTAAACTCTAGGGGCATGAAGCTTTTCACATGCAAATGGCTTCCAGAAAACAACAAGCCCCCGAAAGCCTTGATCTTCTTCTGTCATGGATACGCCATGGAGTGCAGCATCACCATGAACAGTACTGCAATCAGACTAGCCAAAGCAGGCTTTGCCATATATGGGGTAGACTATGAAGGCCATGGAAAATCAGCTGGCCTTGCAGGCTTTGTCAAAAGCTTTGATGATGTTGTCGATGACTGCACCGCTCACTTCACAAAGATTTGCGAGAGCAAAGAGAACAAAGGGAAGATGAGGTATCTGTTGGGAGAGTCAATGGGAGGAGCTGTGGCTCTGCTTGTTCATAGGAAAAAGCCAGAATATTGGGATGGTGCGGTCTTAGTTGCCCCCATGTGTAAGATTGCAGATGAAATGAGGCCATCTCCGATTGTGGTCAGTGTTTTGACAAAGCTCTGCAGGGTTATTCCAACTTGGAAAATAATCCCTACAAATGATGTCATTGATTTAGCTTTCAAAGTACCCGAGGTTAGAAAACAAGTTAGGGAAAACCCCTACTGTTACAAAGGCCGTCCTCGTCTGCAGACCGGCTACGAACTCTTGAGGGTCAGCACGGAGCTTGAGCAAAGGCTTCAAGAGGTCACGTTGCCATTCATAGTCCTCCACGGTGAAGACGATAAAGTCACTGACACCTCGGTTAGTAAACAACTCCATGAGGTGGCGTCGAGTTATGACAAGACATTGAAGTTGTACCCGAAAATGTGGCATGGTCTACTCTATGGAGAGCCACTTGAGAACATTGAGGTTGTGTTTTCGGACATAATCAATTGGTTAGACAAAAGATGTTCCATGGCAAATTCAAGGTTGGAGGGAGAGTTGAAGAGGGAGAATGACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

314

Amino Acids

35.73

Weight (kDa)

7.03

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	35 - 273	4.3e-66	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 146	4e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 272	1.4e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccBSI	CCGCTC	1 cut(s)	293
AccI	GTMKAC	2 cut(s)	213, 814
AciI	CCGC	2 cut(s)	291, 419
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	898
AcyI	GRCGYC	1 cut(s)	764
AfaI	GTAC	3 cut(s)	169, 564, 794
AfiI	CCNNNNNNNGG	2 cut(s)	207, 760
AgsI	TTSAA	5 cut(s)	559, 677, 787, 903, 922
AluBI	AGCT	7 cut(s)	67, 239, 264, 371, 496, 554, 661
AluI	AGCT	7 cut(s)	67, 239, 264, 371, 496, 554, 661
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	5 cut(s)	3, 223, 241, 461, 610
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	898
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	148, 722
AvaI	CYCGRG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	407, 472
BceAI	ACGGC	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	54, 182
BfmI	CTRYAG	2 cut(s)	499, 623
BfuI	GTATCC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpuEI	CTTGAG	3 cut(s)	664, 683, 854
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	7 cut(s)	6, 141, 226, 567, 706, 735, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 902, 932
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 760
Bse118I	RCCGGY	1 cut(s)	629
BseDI	CCNNGG	7 cut(s)	6, 141, 226, 567, 706, 735, 891
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	207, 760
BseRI	GAGGAG	2 cut(s)	50, 381
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	2 cut(s)	169, 271
BshFI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	207, 760
BsnI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BsoBI	CYCGRG	1 cut(s)	566
Bsp143I	GATC	1 cut(s)	117
Bsp19I	CCATGG	4 cut(s)	6, 141, 226, 891
BspACI	CCGC	2 cut(s)	291, 419
BspANI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BspMAI	CTGCAG	2 cut(s)	503, 627
BsrBI	CCGCTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	629
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	7 cut(s)	6, 141, 226, 567, 706, 735, 891
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	4 cut(s)	6, 141, 226, 891
Bst4CI	ACNGT	3 cut(s)	167, 602, 710
Bst6I	CTCTTC	1 cut(s)	917
BstACI	GRCGYC	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	193, 241, 250
BstDEI	CTNAG	1 cut(s)	424
BstDSI	CCRYGG	5 cut(s)	6, 141, 226, 706, 891
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 245, 249
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	2 cut(s)	499, 623
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	720
BstXI	CCANNNNNNTGG	2 cut(s)	13, 408
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BtgI	CCRYGG	5 cut(s)	6, 141, 226, 706, 891
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	487, 726
Cac8I	GCNNGC	3 cut(s)	193, 241, 250
Cfr10I	RCCGGY	1 cut(s)	629
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	168, 563, 793
CviQI	GTAC	3 cut(s)	168, 563, 793
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
Eco130I	CCWWGG	4 cut(s)	6, 141, 226, 891
Eco88I	CYCGRG	1 cut(s)	566
EcoT14I	CCWWGG	4 cut(s)	6, 141, 226, 891
ErhI	CCWWGG	4 cut(s)	6, 141, 226, 891
FblI	GTMKAC	2 cut(s)	213, 814
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	54, 182
GluI	GCNGC	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	5, 225, 243, 463, 612
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	764
HindIII	AAGCTT	2 cut(s)	65, 262
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	148, 722
Hpy166II	GTNNAC	3 cut(s)	214, 746, 815
Hpy188I	TCNGA	3 cut(s)	179, 471, 859
Hpy188III	TCNNGA	3 cut(s)	89, 643, 677
Hpy8I	GTNNAC	3 cut(s)	214, 746, 815
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	167, 602, 710
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	8 cut(s)	78, 150, 173, 248, 288, 449, 501, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 245, 249
HpyF3I	CTNAG	1 cut(s)	424
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	1 cut(s)	764
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	368, 658
LpnPI	CCDG	7 cut(s)	102, 177, 225, 234, 414, 487, 643
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	54, 182
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	3 cut(s)	602, 682, 724
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	1 cut(s)	117
MboII	GAAGA	5 cut(s)	112, 115, 346, 725, 934
MfeI	CAATTG	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	868, 898
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	2 cut(s)	536, 888
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	3 cut(s)	11, 79, 158
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	630
MunI	CAATTG	1 cut(s)	868
MwoI	GCNNNNNNNGC	3 cut(s)	197, 245, 249
NcoI	CCATGG	4 cut(s)	6, 141, 226, 891
NdeII	GATC	1 cut(s)	117
NmuCI	GTSAC	2 cut(s)	682, 724
NspI	RCATGY	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PstI	CTGCAG	2 cut(s)	503, 627
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	169, 564, 794
RsaNI	GTAC	3 cut(s)	168, 563, 793
RseI	CAYNNNNRTG	3 cut(s)	11, 79, 158
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	2 cut(s)	499, 623
SmiMI	CAYNNNNRTG	3 cut(s)	11, 79, 158
SmlI	CTYRAG	3 cut(s)	643, 662, 833
SmoI	CTYRAG	3 cut(s)	643, 662, 833
Sse9I	AATT	2 cut(s)	868, 898
SsiI	CCGC	2 cut(s)	291, 419
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	2 cut(s)	54, 182
StyI	CCWWGG	4 cut(s)	6, 141, 226, 891
TaaI	ACNGT	3 cut(s)	167, 602, 710
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	2 cut(s)	279, 767
TasI	AATT	2 cut(s)	868, 898
TatI	WGTACW	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	2 cut(s)	487, 733
TseFI	GTSAC	2 cut(s)	682, 724
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	2 cut(s)	682, 724
TspDTI	ATGAA	6 cut(s)	77, 176, 234, 377, 468, 685
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	2 cut(s)	487, 733
Van91I	CCANNNNNTGG	1 cut(s)	760
XapI	RAATTY	1 cut(s)	898
XceI	RCATGY	1 cut(s)	78
XmiI	GTMKAC	2 cut(s)	213, 814
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	54, 182
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.