Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Forward (+)

5146656 .. 5147600

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCAGTGATATGGGGAATGTCAAATACGAAGAGGAGTACATCTTAAACTCTAGAGGAATGAAGCTTTTCACATGCAAATGGCTTCCGGACAATAACAAACCTCCCAAAGCCTTGATCTTCATCTGCCATGGATATGGCATGGAGTGTAGCATCACCATGAGCAGTACCGCAACCAGACTAGCCAAAGCACGGTTTGCCATATACGGGATAGATTATGAAGGCCATGGAAGATCGTCAGGCCTTAAGGGCTATGTCAAGAGTTTTGATCGTGTTGTTGACGACTGCACCAACCACTTCACAAACATATGTGAGAGCAAAGAGAACAAAGGAAAAATGAGGTATCTGTTGGGGGAGTCAATGGGAGGAGCAGTGGCTCTGCTTGTTCATAGGAGAAAGCCACAATATTGGGATGGTGCGGTCTTAGTTGCACCCATGTGTAAGATTGCAGATGATATGAGGCCATCTCCTATTGTGATCAGTCTTTTGAAAAAACTCTGCAGGGTTATCCCAACTTGGAAAATAATCCCCACAAATGATATCATCGATGTTGCTTTTAGAGTACCCGAGGTTAGGAAACAGACGAGAGAAAACCCTTACTTCTACAAAGGCCGACCTCGTCTGAAAACCGGCTACGAACTTTTGAGGGTCAGCACGGATATTGAACAGAGGCTTCAAGAGATCACATTGCCGTTCCTAGTTCTCCATGGCGAAGATGATAAAGTTACCGACACATCAGTTAGCAAACAGCTCTATGAGGTGGCCTCGAGTTCTGACAAGTCACTGAAGTTGTACCCGAATATGTGGCATGGTCTGCTCTATGGAGAACTAATTGAGAATGCTGAGATTGTGTTTTCAGACATAATCAATTGGTTAGACAGGAGAAGCACCTCCGGTACTTCAAGGTCGGAGGGCGAGTTGAGAAGGGATGGTGAAAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

314

Amino Acids

35.83

Weight (kDa)

8.81

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	35 - 273	9.6e-68	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 149	2.9e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	41 - 270	3.9e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	2 cut(s)	171, 419
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	5 cut(s)	41, 169, 564, 794, 898
AfiI	CCNNNNNNNGG	3 cut(s)	192, 207, 573
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	490, 665, 677, 903
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	67, 751
AluI	AGCT	2 cut(s)	67, 751
Ama87I	CYCGRG	2 cut(s)	566, 766
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	6 cut(s)	3, 223, 241, 461, 610, 762
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	148, 944
AvaI	CYCGRG	2 cut(s)	566, 766
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	3 cut(s)	407, 472, 923
BceAI	ACGGC	1 cut(s)	676
BclI	TGATCA	1 cut(s)	477
BfaI	CTAG	3 cut(s)	54, 182, 698
BfmI	CTRYAG	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	249
BmeT110I	CYCGRG	2 cut(s)	566, 766
BmsI	GCATC	1 cut(s)	162
BplI	GAGNNNNNCTC	4 cut(s)	451, 483, 749, 781
Bsa29I	ATCGAT	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	130, 226, 567, 706
BsaWI	WCCGGW	2 cut(s)	88, 893
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 902, 932
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 207, 573
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	88
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	130, 226, 567, 706
BseGI	GGATG	2 cut(s)	418, 934
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	3 cut(s)	192, 207, 573
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	2 cut(s)	50, 381
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BshVI	ATCGAT	1 cut(s)	546
BsiHKCI	CYCGRG	2 cut(s)	566, 766
BsiSI	CCGG	3 cut(s)	89, 630, 894
BslI	CCNNNNNNNGG	3 cut(s)	192, 207, 573
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BsoBI	CYCGRG	2 cut(s)	566, 766
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	5 cut(s)	117, 233, 268, 477, 681
Bsp19I	CCATGG	3 cut(s)	130, 226, 706
BspACI	CCGC	2 cut(s)	171, 419
BspANI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BspCNI	CTCAG	1 cut(s)	835
BspDI	ATCGAT	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	130, 226, 567, 706
BssMI	GATC	5 cut(s)	117, 233, 268, 477, 681
BssT1I	CCWWGG	3 cut(s)	130, 226, 706
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	2 cut(s)	197, 814
BstDEI	CTNAG	2 cut(s)	424, 843
BstDSI	CCRYGG	3 cut(s)	130, 226, 706
BstF5I	GGATG	2 cut(s)	418, 934
BstKTI	GATC	5 cut(s)	120, 236, 271, 480, 684
BstMBI	GATC	5 cut(s)	117, 233, 268, 477, 681
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 249, 814
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	499
BstXI	CCANNNNNNTGG	3 cut(s)	13, 137, 408
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	3 cut(s)	130, 226, 706
BtsCI	GGATG	2 cut(s)	418, 934
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	13, 378, 782
Cfr10I	RCCGGY	1 cut(s)	629
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	5 cut(s)	40, 168, 563, 793, 897
CviAII	CATG	8 cut(s)	75, 131, 142, 160, 227, 436, 707, 809
CviQI	GTAC	5 cut(s)	40, 168, 563, 793, 897
DdeI	CTNAG	2 cut(s)	424, 843
DpnI	GATC	5 cut(s)	119, 235, 270, 479, 683
DpnII	GATC	5 cut(s)	117, 233, 268, 477, 681
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	130, 226, 706
Eco147I	AGGCCT	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	2 cut(s)	566, 766
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	3 cut(s)	130, 226, 706
ErhI	CCWWGG	3 cut(s)	130, 226, 706
FaeI	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
FatI	CATG	8 cut(s)	74, 130, 141, 159, 226, 435, 706, 808
FauNDI	CATATG	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	477
FokI	GGATG	2 cut(s)	425, 941
FspBI	CTAG	3 cut(s)	54, 182, 698
HaeIII	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
HapII	CCGG	3 cut(s)	89, 630, 894
Hin1II	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	3 cut(s)	89, 630, 894
HphI	GGTGA	2 cut(s)	148, 944
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	624, 775, 859, 910
Hpy188III	TCNNGA	4 cut(s)	54, 89, 259, 677
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	215, 918
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	78, 288, 431, 449, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 249, 814
HpyF3I	CTNAG	2 cut(s)	424, 843
Hsp92II	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
Kpn2I	TCCGGA	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	117, 233, 268, 477, 681
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	8 cut(s)	19, 102, 190, 225, 487, 643, 865, 907
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	3 cut(s)	54, 182, 698
MaeIII	GTNAC	2 cut(s)	724, 780
MalI	GATC	5 cut(s)	119, 235, 270, 479, 683
MboI	GATC	5 cut(s)	117, 233, 268, 477, 681
MboII	GAAGA	4 cut(s)	44, 112, 243, 725
MfeI	CAATTG	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	831, 868
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	888
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	47, 246, 943
MslI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	3 cut(s)	89, 630, 894
MunI	CAATTG	1 cut(s)	868
Mva1269I	GAATGC	1 cut(s)	844
MwoI	GCNNNNNNNGC	3 cut(s)	197, 249, 814
NcoI	CCATGG	3 cut(s)	130, 226, 706
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	5 cut(s)	117, 233, 268, 477, 681
NlaIII	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
NmuCI	GTSAC	1 cut(s)	780
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	844
PdmI	GAANNNNTTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	618
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspXI	VCTCGAGB	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	618
RsaI	GTAC	5 cut(s)	41, 169, 564, 794, 898
RsaNI	GTAC	5 cut(s)	40, 168, 563, 793, 897
RseI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
SaqAI	TTAA	3 cut(s)	47, 246, 943
Sau3AI	GATC	5 cut(s)	117, 233, 268, 477, 681
SchI	GAGTC	1 cut(s)	365
SetI	ASST	9 cut(s)	69, 106, 344, 573, 619, 753, 762, 893, 908
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	766
SlaI	CTCGAG	1 cut(s)	766
SmiMI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
SmlI	CTYRAG	2 cut(s)	245, 766
SmoI	CTYRAG	2 cut(s)	245, 766
Sse9I	AATT	2 cut(s)	831, 868
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	171, 419
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	3 cut(s)	54, 182, 698
StuI	AGGCCT	1 cut(s)	243
StyI	CCWWGG	3 cut(s)	130, 226, 706
TaaI	ACNGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	546, 767
TasI	AATT	2 cut(s)	831, 868
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	3 cut(s)	47, 246, 943
Tru9I	TTAA	3 cut(s)	47, 246, 943
TscAI	CASTG	3 cut(s)	13, 378, 789
TseFI	GTSAC	1 cut(s)	780
Tsp45I	GTSAC	1 cut(s)	780
TspDTI	ATGAA	4 cut(s)	77, 112, 234, 377
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	3 cut(s)	13, 378, 789
Tth111I	GACNNNGTC	1 cut(s)	618
Vha464I	CTTAAG	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	78
XhoI	CTCGAG	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	3 cut(s)	54, 182, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.