Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Reverse (-)

86958266 .. 86959210

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCAGTGATATGGGGAATGTCAAATACGAAGAGGAATACATCTTAAACTCTAGAGGAATGAAGCTTTTCACATGCAAATGGCTTCCGGACAATAACAAACCTCCCAAAGCCTTGATCTTCATCTGCCATGGATATGGCATGGAGTGTAGCATCACCATGAGCAGTACCGCAACCAGACTAGCCAAAGCGGGGTTTGCCATATACGGGATAGATTATGAAGGCCATGGAAGATCGTCAGGCCTTAAGGGCTATGTCAAGAGTTTTGATCGTGTTGTTGACGACTGCACCAACCACTTCACAAACATATGTGAGAGCAAAGAGAACAGAGGAAAAATGAGGTATCTGTTGGGGGAGTCAATGGGAGGAGCAGTGGCTCTGCTTGTTCATAGGAGAAAGCCACAATATTGGGATGGTGCGGTCTTAGCCGCACCCATGTGTAAGATTGCAGATGATATGAGGCCATCTCCTATTGTGATCAGTCTTTTGAAAAAACTCTGCAGAGTTATCCCAACTTGGAAAATAATCCCCACAAATGATATCATCGATGTTGCTTTTAAAGTACCCGAGGTTAGGAAACAGACGAGAGAAAACCCCTACTCCTACAAGGGCCGACCTCGTCTGAAAACCGGCTACGAACTTTTGAGGGTCAGCACGGATATTGAACAGAGGCTTCAAGAGATCACATTGCCGTTCCTAGTTCTCCATGGCGAAGATGATAAAGTTACCGCCACATCAGTTAGCAAACAGCTCTATGAGGTGGCCTCGAGTTCTGACAAGACACTGAAGTTGTACCCCAATATGTGGCATGGTCTGCTCTATGGAGAACCAATTGAGAATACTGAGATTGTGTTTTCAGACATAATTAATTGGTTAGACAGGAGAAGCACCTCCGGAACTTCAAGGTCGGAGGGAGAGTTGAGAAGGGATAGTGAAAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

314

Amino Acids

35.66

Weight (kDa)

8.81

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	35 - 273	4.1e-68	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 149	1e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	41 - 277	8.5e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccIII	TCCGGA	2 cut(s)	88, 893
AciI	CCGC	5 cut(s)	171, 191, 419, 429, 729
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	3 cut(s)	169, 564, 794
AfiI	CCNNNNNNNGG	4 cut(s)	192, 207, 573, 804
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	490, 665, 677, 903
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	67, 751
AluI	AGCT	2 cut(s)	67, 751
Ama87I	CYCGRG	2 cut(s)	566, 766
Aor13HI	TCCGGA	2 cut(s)	88, 893
AoxI	GGCC	6 cut(s)	3, 223, 241, 461, 610, 762
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	2 cut(s)	566, 766
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	407, 472
BceAI	ACGGC	1 cut(s)	676
BclI	TGATCA	1 cut(s)	477
BfaI	CTAG	3 cut(s)	54, 182, 698
BfmI	CTRYAG	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmeT110I	CYCGRG	2 cut(s)	566, 766
BmgT120I	GGNCC	1 cut(s)	610
BmsI	GCATC	1 cut(s)	162
BplI	GAGNNNNNCTC	4 cut(s)	451, 483, 749, 781
Bsa29I	ATCGAT	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	130, 226, 567, 706
BsaWI	WCCGGW	2 cut(s)	88, 893
BsaXI	ACNNNNNCTCC	6 cut(s)	357, 387, 584, 614, 902, 932
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 207, 573, 804
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	2 cut(s)	88, 893
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	130, 226, 567, 706
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	4 cut(s)	192, 207, 573, 804
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BshVI	ATCGAT	1 cut(s)	546
BsiHKCI	CYCGRG	2 cut(s)	566, 766
BsiSI	CCGG	3 cut(s)	89, 630, 894
BslI	CCNNNNNNNGG	4 cut(s)	192, 207, 573, 804
BsnI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BsoBI	CYCGRG	2 cut(s)	566, 766
Bsp13I	TCCGGA	2 cut(s)	88, 893
Bsp143I	GATC	5 cut(s)	117, 233, 268, 477, 681
Bsp19I	CCATGG	3 cut(s)	130, 226, 706
BspACI	CCGC	5 cut(s)	171, 191, 419, 429, 729
BspANI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BspCNI	CTCAG	1 cut(s)	835
BspDI	ATCGAT	1 cut(s)	546
BspEI	TCCGGA	2 cut(s)	88, 893
BspMAI	CTGCAG	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	130, 226, 567, 706
BssMI	GATC	5 cut(s)	117, 233, 268, 477, 681
BssT1I	CCWWGG	3 cut(s)	130, 226, 706
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstDEI	CTNAG	2 cut(s)	424, 843
BstDSI	CCRYGG	3 cut(s)	130, 226, 706
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	5 cut(s)	120, 236, 271, 480, 684
BstMBI	GATC	5 cut(s)	117, 233, 268, 477, 681
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 249, 425, 814
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	499
BstXI	CCANNNNNNTGG	3 cut(s)	13, 137, 408
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	3 cut(s)	130, 226, 706
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	13, 378, 782
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	610
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	3 cut(s)	168, 563, 793
CviAII	CATG	8 cut(s)	75, 131, 142, 160, 227, 436, 707, 809
CviQI	GTAC	3 cut(s)	168, 563, 793
DdeI	CTNAG	2 cut(s)	424, 843
DpnI	GATC	5 cut(s)	119, 235, 270, 479, 683
DpnII	GATC	5 cut(s)	117, 233, 268, 477, 681
DraI	TTTAAA	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	130, 226, 706
Eco147I	AGGCCT	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	2 cut(s)	566, 766
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	3 cut(s)	130, 226, 706
ErhI	CCWWGG	3 cut(s)	130, 226, 706
FaeI	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
FatI	CATG	8 cut(s)	74, 130, 141, 159, 226, 435, 706, 808
FauI	CCCGC	1 cut(s)	184
FauNDI	CATATG	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	54, 182, 698
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	6 cut(s)	5, 225, 243, 463, 612, 764
HapII	CCGG	3 cut(s)	89, 630, 894
Hin1II	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	3 cut(s)	89, 630, 894
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	624, 775, 859, 910
Hpy188III	TCNNGA	5 cut(s)	54, 89, 259, 677, 894
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	215, 918
HpyCH4V	TGCA	4 cut(s)	78, 288, 449, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 249, 425, 814
HpyF3I	CTNAG	2 cut(s)	424, 843
Hsp92II	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
Kpn2I	TCCGGA	2 cut(s)	88, 893
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	117, 233, 268, 477, 681
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	7 cut(s)	19, 102, 190, 225, 643, 865, 907
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	3 cut(s)	54, 182, 698
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	5 cut(s)	119, 235, 270, 479, 683
MboI	GATC	5 cut(s)	117, 233, 268, 477, 681
MboII	GAAGA	4 cut(s)	44, 112, 243, 725
MfeI	CAATTG	1 cut(s)	831
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	831, 864, 868
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	888
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	2 cut(s)	88, 893
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	47, 246, 558, 867, 943
MslI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	3 cut(s)	89, 630, 894
MunI	CAATTG	1 cut(s)	831
MwoI	GCNNNNNNNGC	4 cut(s)	197, 249, 425, 814
NcoI	CCATGG	3 cut(s)	130, 226, 706
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	5 cut(s)	117, 233, 268, 477, 681
NlaIII	CATG	8 cut(s)	78, 134, 145, 163, 230, 439, 710, 812
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	618
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	610
PspXI	VCTCGAGB	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	618
RsaI	GTAC	3 cut(s)	169, 564, 794
RsaNI	GTAC	3 cut(s)	168, 563, 793
RseI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
SaqAI	TTAA	5 cut(s)	47, 246, 558, 867, 943
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	5 cut(s)	117, 233, 268, 477, 681
Sau96I	GGNCC	1 cut(s)	610
SchI	GAGTC	1 cut(s)	365
SetI	ASST	9 cut(s)	69, 106, 344, 573, 619, 753, 762, 893, 908
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	766
SlaI	CTCGAG	1 cut(s)	766
SmiMI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
SmlI	CTYRAG	2 cut(s)	245, 766
SmoI	CTYRAG	2 cut(s)	245, 766
Sse9I	AATT	3 cut(s)	831, 864, 868
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	5 cut(s)	171, 191, 419, 429, 729
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	3 cut(s)	54, 182, 698
StuI	AGGCCT	1 cut(s)	243
StyI	CCWWGG	3 cut(s)	130, 226, 706
TaqI	TCGA	2 cut(s)	546, 767
TasI	AATT	3 cut(s)	831, 864, 868
TauI	GCSGC	1 cut(s)	431
Tru1I	TTAA	5 cut(s)	47, 246, 558, 867, 943
Tru9I	TTAA	5 cut(s)	47, 246, 558, 867, 943
TscAI	CASTG	3 cut(s)	13, 378, 789
TspDTI	ATGAA	4 cut(s)	77, 112, 234, 377
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	3 cut(s)	13, 378, 789
Tth111I	GACNNNGTC	1 cut(s)	618
Van91I	CCANNNNNTGG	1 cut(s)	804
Vha464I	CTTAAG	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	867
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	78
XhoI	CTCGAG	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	3 cut(s)	54, 182, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.