Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Forward (+)

16932187 .. 16933994

Gene Structure 1808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCATTGATATGGGGAATGTCATATATGAAGAGGAGTATATCTTCAACTCTAGAGGAATGAAGCTTTTCACATGCAAATGGCTCCCAGAAAACAACAAGCCCCCGAAAGCCTTGATCTTGATCTGTCATGGATATGGCATGGAGTGCAGCATCACCATGAACAGTACTGCAATCAGACTAGCCAAAGCAGGGTTTGCCATATATGGGATAGACTATGAAGGCCATGGAAAATCAGCAGGCCTTGCAGGCTTTGTCAAAAGCTTCGATGCTGTTGTCGATGACTGCACCTCTCACTTCACAAACATTTGCGAGAGCAAAGAGAACAAAGGGAAGACGAGGTATCTGTTGGGAGAGTCAATGGGAGGAGCTGTGGCTCTGCTTGTTCATAGGAAAAAGCCAGAATATTGGGATGGTGCGGTCTTAGTTGCCCCCATGTGTAAGATTTCAGATGAAATGAAGCCATCTCCAGTTGTGGTCAGTGTTTTGACTCAGCTCTGCAGGGTTATTCCAACCTGGAAAATAATCCCTACAAATGATGTCATTGATTTTGCTTTCAAAGTACCCGAGGTTAGAAAACAGGTTAGGGAAAACCCCTACTGTTACAAAGGCAGGCCTCGTCTGCAGACCGGCACTGAACTCTTGAGGGTCAGCACGGAACTTGAGCAAAGGCTTCAAGAGGTCACATTGCCGTTCCTAATCCTCCACGGCGAAGAGGATAAAGTAACTGACAAATCGGCTAGTAAACAGCTATATGAAGTGGCGTCGAGTTATGATAAGACATTGAAGTTGTATCCAGAGATGTGGCATGGTCTGCTCTATGGAGAGCCACTGGAGAACATTGAGGTTGTGTTTTCAGACATGATCAATTGGTTAGACAAGAGATGTTCCATGGCAAATTCAAGGTTAGAAGGAGAGTTGAAGATGGAGAATGACAAAGAAGTTTATAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

319

Amino Acids

36.08

Weight (kDa)

6.14

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	35 - 273	2.4e-67	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 153	3.6e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 273	6.4e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	898
AcyI	GRCGYC	1 cut(s)	764
AfaI	GTAC	2 cut(s)	169, 564
AfiI	CCNNNNNNNGG	2 cut(s)	192, 207
AgsI	TTSAA	6 cut(s)	49, 559, 677, 787, 903, 922
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	5 cut(s)	67, 264, 371, 496, 751
AluI	AGCT	5 cut(s)	67, 264, 371, 496, 751
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	3, 223, 241, 614
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	898
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	3 cut(s)	407, 472, 919
BceAI	ACGGC	2 cut(s)	676, 724
BciT130I	CCWGG	1 cut(s)	517
BciVI	GTATCC	1 cut(s)	804
BclI	TGATCA	1 cut(s)	864
BfaI	CTAG	3 cut(s)	54, 182, 741
BfmI	CTRYAG	2 cut(s)	499, 623
BfuI	GTATCC	1 cut(s)	804
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	517
BmeT110I	CYCGRG	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	2 cut(s)	162, 259
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	453, 854
BpuEI	CTTGAG	2 cut(s)	664, 683
BsaBI	GATNNNNATC	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	226, 567, 706, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 207
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	470, 837
Bse3DI	GCAATG	1 cut(s)	686
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	4 cut(s)	226, 567, 706, 891
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	192, 207
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	2 cut(s)	470, 837
BseRI	GAGGAG	2 cut(s)	50, 381
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	2 cut(s)	169, 271
BshFI	GGCC	4 cut(s)	5, 225, 243, 616
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	192, 207
BsnI	GGCC	4 cut(s)	5, 225, 243, 616
BsoBI	CYCGRG	1 cut(s)	566
Bsp143I	GATC	3 cut(s)	117, 123, 864
Bsp19I	CCATGG	2 cut(s)	226, 891
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	4 cut(s)	5, 225, 243, 616
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	2 cut(s)	503, 627
BsrDI	GCAATG	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	470, 837
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	226, 567, 706, 891
BssMI	GATC	3 cut(s)	117, 123, 864
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	2 cut(s)	226, 891
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	167, 602
Bst6I	CTCTTC	2 cut(s)	27, 708
BstACI	GRCGYC	1 cut(s)	764
BstAPI	GCANNNNNTGC	4 cut(s)	147, 197, 245, 814
BstC8I	GCNNGC	3 cut(s)	241, 250, 614
BstDEI	CTNAG	2 cut(s)	424, 492
BstDSI	CCRYGG	3 cut(s)	226, 706, 891
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	3 cut(s)	120, 126, 867
BstMBI	GATC	3 cut(s)	117, 123, 864
BstMWI	GCNNNNNNNGC	6 cut(s)	147, 197, 245, 249, 622, 814
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	2 cut(s)	499, 623
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	341
BstXI	CCANNNNNNTGG	3 cut(s)	13, 408, 804
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	4 cut(s)	5, 225, 243, 616
BtgI	CCRYGG	3 cut(s)	226, 706, 891
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	487, 633, 830
Cac8I	GCNNGC	3 cut(s)	241, 250, 614
Cfr10I	RCCGGY	1 cut(s)	629
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	168, 563
CviAII	CATG	9 cut(s)	75, 131, 142, 160, 227, 436, 809, 862, 892
CviQI	GTAC	2 cut(s)	168, 563
DdeI	CTNAG	2 cut(s)	424, 492
DpnI	GATC	3 cut(s)	119, 125, 866
DpnII	GATC	3 cut(s)	117, 123, 864
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	27, 708
EarI	CTCTTC	2 cut(s)	27, 708
Eco130I	CCWWGG	2 cut(s)	226, 891
Eco147I	AGGCCT	2 cut(s)	243, 616
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	226, 891
ErhI	CCWWGG	2 cut(s)	226, 891
FaeI	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 812, 865, 895
FatI	CATG	9 cut(s)	74, 130, 141, 159, 226, 435, 808, 861, 891
FbaI	TGATCA	1 cut(s)	864
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	3 cut(s)	54, 182, 741
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	2 cut(s)	453, 854
HaeIII	GGCC	4 cut(s)	5, 225, 243, 616
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 812, 865, 895
HindIII	AAGCTT	2 cut(s)	65, 262
HinfI	GANTC	2 cut(s)	356, 490
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	746
Hpy188I	TCNGA	3 cut(s)	179, 451, 859
Hpy188III	TCNNGA	5 cut(s)	54, 121, 643, 677, 797
Hpy8I	GTNNAC	1 cut(s)	746
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	2 cut(s)	215, 905
HpyCH4III	ACNGT	2 cut(s)	167, 602
HpyCH4V	TGCA	7 cut(s)	78, 150, 173, 248, 288, 501, 625
HpyF10VI	GCNNNNNNNGC	6 cut(s)	147, 197, 245, 249, 622, 814
HpyF3I	CTNAG	2 cut(s)	424, 492
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 812, 865, 895
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	3 cut(s)	117, 123, 864
LmnI	GCTCC	2 cut(s)	90, 368
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	162, 259
MaeI	CTAG	3 cut(s)	54, 182, 741
MaeIII	GTNAC	3 cut(s)	602, 682, 724
MalI	GATC	3 cut(s)	119, 125, 866
MboI	GATC	3 cut(s)	117, 123, 864
MboII	GAAGA	5 cut(s)	37, 44, 346, 725, 934
MfeI	CAATTG	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	868, 898
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	365, 484
MmeI	TCCRAC	1 cut(s)	536
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	4 cut(s)	11, 79, 135, 158
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	517
MunI	CAATTG	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	6 cut(s)	147, 197, 245, 249, 622, 814
NcoI	CCATGG	2 cut(s)	226, 891
NdeII	GATC	3 cut(s)	117, 123, 864
NlaIII	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 812, 865, 895
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	682
NspI	RCATGY	1 cut(s)	78
PceI	AGGCCT	2 cut(s)	243, 616
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	2 cut(s)	364, 484
PpsI	GAGTC	2 cut(s)	364, 484
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	1 cut(s)	86
PstI	CTGCAG	2 cut(s)	503, 627
RsaI	GTAC	2 cut(s)	169, 564
RsaNI	GTAC	2 cut(s)	168, 563
RseI	CAYNNNNRTG	4 cut(s)	11, 79, 135, 158
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	3 cut(s)	117, 123, 864
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	2 cut(s)	365, 484
ScrFI	CCNGG	1 cut(s)	517
SfaNI	GCATC	2 cut(s)	162, 259
SfcI	CTRYAG	2 cut(s)	499, 623
SmiMI	CAYNNNNRTG	4 cut(s)	11, 79, 135, 158
SmlI	CTYRAG	2 cut(s)	643, 662
SmoI	CTYRAG	2 cut(s)	643, 662
Sse9I	AATT	2 cut(s)	868, 898
SseBI	AGGCCT	2 cut(s)	243, 616
SsiI	CCGC	1 cut(s)	419
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	3 cut(s)	54, 182, 741
StuI	AGGCCT	2 cut(s)	243, 616
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	2 cut(s)	226, 891
TaaI	ACNGT	2 cut(s)	167, 602
TaqI	TCGA	3 cut(s)	267, 279, 767
TasI	AATT	2 cut(s)	868, 898
TatI	WGTACW	1 cut(s)	167
TscAI	CASTG	3 cut(s)	487, 640, 837
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	8 cut(s)	45, 77, 176, 234, 377, 468, 473, 771
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	3 cut(s)	487, 640, 837
XapI	RAATTY	1 cut(s)	898
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	3 cut(s)	54, 182, 741
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.