Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Reverse (-)

11570197 .. 11571828

Gene Structure 1632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGGAATGTCAAATATGAAGAGGAGTTTGTCTTAAACTCTAGAGGAATGAAGCTTTTCACATGTAAATGGCTTCCAGAAAACAACAAGCCCCCGAAAGCCTTGATCTTCTTCTGTCATGGATACGCCATGGAGTGCAGCATCACCATGAACAGTACTGCAGTCAGACTAGCCAAAGCAGGCTTTGCCATATATGGGATAGACTATGAAGGCCATGGAAAATCAGCTGGCCTTGCAGGCTTTGTCAAAAGCTTTGATGATGTTGTCGATGACTGCACCGCTCACTTCACAAAGATTTGCGAGAGCAAAGAGAACAAAGGGAAGATGAGGTATCTGTTGGGAGAGTCAATGGGAGGAGCTGTGGCTCTGCTTGTTCATAGGAAAAAGCCAGAATATTGGGATGGTGCGGTCTTAGTTGCCCCCATGTGTAAGATTGCAGATGAAATGAGGCCATCTCCGATTGTGGTGAGTGTTTTGACAAAGCTCTGCAGGGTTATTCCAACTTGGAAAATAATCCCTACAAATGATGTCATTGATTTAGCTTTCAAAGTACCCGAGGTTAGAAAACAGGTTAGGGAAAACCCCTACTGTTACAAAGGCCGTCCTCGTCTGCAGACCGGCTACGAACTCTTGAGGGTCAGCACGGAGCTTGAGCAAAGGCTTCAAGAGGTCAAGTTGCCGTTCATAGTCCTCCACGGCGAAGACGATAAAGTCACTGACACCTCGGTTAGTAAAAAACTCCATGAGGTGGCGTCGAGTTATGATAAGACATTGAAGTTGTACCCGAAAATGTGGCATGGTCTACTCTATGGAGAGCCACTTGAGAACACTGAGGTTGTGTTTTCGGACATAATCAATTGGTTAGACAAAAGATGTTCCATGGCAAATTCAAGGTTGGAGGGAGAGTTGAAGAGGGAGAATGACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

311

Amino Acids

35.25

Weight (kDa)

8.44

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	31 - 269	2.1e-66	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	35 - 142	2.5e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	36 - 266	3.4e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccBSI	CCGCTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	802
AciI	CCGC	2 cut(s)	279, 407
AcsI	RAATTY	1 cut(s)	886
AcyI	GRCGYC	1 cut(s)	752
AfaI	GTAC	3 cut(s)	157, 552, 782
AfiI	CCNNNNNNNGG	2 cut(s)	195, 748
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	5 cut(s)	547, 665, 775, 891, 910
AluBI	AGCT	7 cut(s)	55, 227, 252, 359, 484, 542, 649
AluI	AGCT	7 cut(s)	55, 227, 252, 359, 484, 542, 649
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	211, 229, 449, 598
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	886
Asp700I	GAANNNNTTC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	136, 478
AvaI	CYCGRG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	708
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	2 cut(s)	395, 460
BceAI	ACGGC	3 cut(s)	585, 664, 712
BciVI	GTATCC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	42, 170
BfmI	CTRYAG	3 cut(s)	159, 487, 611
BfuI	GTATCC	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpuEI	CTTGAG	3 cut(s)	652, 671, 842
BsaHI	GRCGYC	1 cut(s)	752
BsaJI	CCNNGG	6 cut(s)	129, 214, 555, 694, 723, 879
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 890, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 748
Bse118I	RCCGGY	1 cut(s)	617
BseDI	CCNNGG	6 cut(s)	129, 214, 555, 694, 723, 879
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	195, 748
BseMII	CTCAG	1 cut(s)	822
BseRI	GAGGAG	2 cut(s)	38, 369
BseXI	GCAGC	1 cut(s)	150
BsgI	GTGCAG	2 cut(s)	157, 259
BshFI	GGCC	4 cut(s)	213, 231, 451, 600
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	195, 748
BsnI	GGCC	4 cut(s)	213, 231, 451, 600
BsoBI	CYCGRG	1 cut(s)	554
Bsp143I	GATC	1 cut(s)	105
Bsp19I	CCATGG	3 cut(s)	129, 214, 879
BspACI	CCGC	2 cut(s)	279, 407
BspANI	GGCC	4 cut(s)	213, 231, 451, 600
BspCNI	CTCAG	1 cut(s)	823
BspMAI	CTGCAG	3 cut(s)	163, 491, 615
BsrBI	CCGCTC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	617
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	6 cut(s)	129, 214, 555, 694, 723, 879
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	752
BssT1I	CCWWGG	3 cut(s)	129, 214, 879
Bst4CI	ACNGT	2 cut(s)	155, 590
Bst6I	CTCTTC	2 cut(s)	15, 905
BstACI	GRCGYC	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	181, 229, 238
BstDEI	CTNAG	2 cut(s)	412, 831
BstDSI	CCRYGG	4 cut(s)	129, 214, 694, 879
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 233, 237
BstNSI	RCATGY	1 cut(s)	66
BstSFI	CTRYAG	3 cut(s)	159, 487, 611
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	708
BstXI	CCANNNNNNTGG	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	213, 231, 451, 600
BtgI	CCRYGG	4 cut(s)	129, 214, 694, 879
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	714, 828
Cac8I	GCNNGC	3 cut(s)	181, 229, 238
Cfr10I	RCCGGY	1 cut(s)	617
CseI	GACGC	1 cut(s)	741
Csp6I	GTAC	3 cut(s)	156, 551, 781
CviAII	CATG	9 cut(s)	63, 119, 130, 148, 215, 424, 743, 797, 880
CviQI	GTAC	3 cut(s)	156, 551, 781
DdeI	CTNAG	2 cut(s)	412, 831
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	2 cut(s)	15, 905
EarI	CTCTTC	2 cut(s)	15, 905
Eco130I	CCWWGG	3 cut(s)	129, 214, 879
Eco88I	CYCGRG	1 cut(s)	554
EcoT14I	CCWWGG	3 cut(s)	129, 214, 879
ErhI	CCWWGG	3 cut(s)	129, 214, 879
FaeI	CATG	9 cut(s)	66, 122, 133, 151, 218, 427, 746, 800, 883
FatI	CATG	9 cut(s)	62, 118, 129, 147, 214, 423, 742, 796, 879
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	2 cut(s)	42, 170
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	213, 231, 451, 600
HapII	CCGG	1 cut(s)	618
HgaI	GACGC	1 cut(s)	741
Hin1I	GRCGYC	1 cut(s)	752
Hin1II	CATG	9 cut(s)	66, 122, 133, 151, 218, 427, 746, 800, 883
HindIII	AAGCTT	2 cut(s)	53, 250
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	2 cut(s)	136, 478
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	3 cut(s)	167, 459, 847
Hpy188III	TCNNGA	4 cut(s)	42, 77, 631, 665
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	1 cut(s)	757
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	155, 590
HpyCH4V	TGCA	7 cut(s)	138, 161, 236, 276, 437, 489, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 233, 237
HpyF3I	CTNAG	2 cut(s)	412, 831
Hsp92I	GRCGYC	1 cut(s)	752
Hsp92II	CATG	9 cut(s)	66, 122, 133, 151, 218, 427, 746, 800, 883
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	356, 646
LpnPI	CCDG	8 cut(s)	90, 165, 213, 222, 402, 475, 554, 631
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	42, 170
MaeIII	GTNAC	2 cut(s)	590, 712
MalI	GATC	1 cut(s)	107
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	1 cut(s)	105
MboII	GAAGA	6 cut(s)	32, 100, 103, 334, 713, 922
MfeI	CAATTG	1 cut(s)	856
MluCI	AATT	2 cut(s)	856, 886
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	524, 876
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	67, 146
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	856
MwoI	GCNNNNNNNGC	3 cut(s)	185, 233, 237
NcoI	CCATGG	3 cut(s)	129, 214, 879
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	9 cut(s)	66, 122, 133, 151, 218, 427, 746, 800, 883
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	1 cut(s)	66
PciI	ACATGT	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	62
PstI	CTGCAG	3 cut(s)	163, 491, 615
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	3 cut(s)	157, 552, 782
RsaNI	GTAC	3 cut(s)	156, 551, 781
RseI	CAYNNNNRTG	2 cut(s)	67, 146
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	1 cut(s)	353
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	3 cut(s)	159, 487, 611
SmiMI	CAYNNNNRTG	2 cut(s)	67, 146
SmlI	CTYRAG	3 cut(s)	631, 650, 821
SmoI	CTYRAG	3 cut(s)	631, 650, 821
Sse9I	AATT	2 cut(s)	856, 886
SsiI	CCGC	2 cut(s)	279, 407
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	2 cut(s)	42, 170
StyI	CCWWGG	3 cut(s)	129, 214, 879
TaaI	ACNGT	2 cut(s)	155, 590
TaqI	TCGA	2 cut(s)	267, 755
TasI	AATT	2 cut(s)	856, 886
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	2 cut(s)	721, 835
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	7 cut(s)	33, 65, 164, 222, 365, 456, 673
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	2 cut(s)	721, 835
Van91I	CCANNNNNTGG	1 cut(s)	748
XapI	RAATTY	1 cut(s)	886
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	2 cut(s)	42, 170
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.