Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Forward (+)

25287132 .. 25290401

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G226400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCTCTGATATGGAAGGTGTCAAATATGAAGAGGAGTTCATCTTAAATTCTCGAGGCTTGAAGCTTTTCACATGCAGATGGCTCCCAAAAAACACCACACCCAAAGCCTTAATCTTCATCTGTCATGGATACGCCATGGAATGCAGCATCACCATGAACAGTACTGCAATCAGGCTTGCCAGAGCAGGCTTTGCCTTATATGGGATTGACTATGAAGGCCATGGAAAATCAGCAGGCCTTGAAGGCTATGTCAAAAGCTTTGATGATGTAGTGGATGACTGTACCAATCACTTCACAAACATATGTGAAAGCAGAGAGAACAAAGGAAAAATGAGGTATCTGTTGGGAGAGTCAATGGGAGGAGCCGTGGCTCTGCTGGTGCACAGAAAAAAGCCAAAGTTTTGGGATGGTGCAGTTTTGGTTGCACCTATGTGTAAGATTGCAGATGAATTGAGGCCATCTCCTTTCGTCATCAGTGCTTTGACAAAGCTCTGCAAGTTCATTCCAACCTGGAAAATAATCCCAACAAATGATATCATCGACGTTGCTTTCAAAGTACCCGAGATAAGAGAACAGATTAGAGAAAACCCCTACTGTTACAAAGGCCGGCCTCGGCTTCAAACCGGCTACGAGCTTTTGAGGGTGAGCTCGGATCTTGAGCAGAGGCTTGAAGAGGTCACCTTGCCATTCCTAGTTTTACATGGGGAAGACGATAAGGTGACAGATAAATCAGTCAGCAAACAGCTTCATGACGTGGCTTCTAGCCAGGACAAGACATTGAAGATGTACCCAAATATGTGGCATGGTCTGCTCTACGGAGAAACACCAGACAACATTGAGATTGTGTTTTCAGACATAATCAGCTGGTTAGAGAACAGAAGTGCTTTTGGCAATTCAAGGTTGGAGGGAGAGTTGAAACGTGGAAATGACGATTTGTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

316

Amino Acids

35.72

Weight (kDa)

6.21

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	4 cut(s)	166, 286, 561, 791
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	8 cut(s)	64, 245, 556, 623, 674, 784, 900, 919
AhdI	GACNNNNNGTC	1 cut(s)	937
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	512, 768
AleI	CACNNNNGTG	1 cut(s)	433
AluBI	AGCT	7 cut(s)	67, 261, 493, 637, 651, 748, 867
AluI	AGCT	7 cut(s)	67, 261, 493, 637, 651, 748, 867
Alw21I	GWGCWC	2 cut(s)	387, 653
Alw44I	GTGCAC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	663
Ama87I	CYCGRG	2 cut(s)	54, 563
AoxI	GGCC	6 cut(s)	3, 220, 238, 458, 607, 611
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	145, 658, 673, 733
AvaI	CYCGRG	2 cut(s)	54, 563
BaeGI	GKGCMC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	2 cut(s)	387, 653
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	3 cut(s)	75, 404, 469
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	2 cut(s)	514, 770
BciVI	GTATCC	1 cut(s)	125
BfaI	CTAG	2 cut(s)	695, 765
BfuI	GTATCC	1 cut(s)	125
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	514, 770
BmeRI	GACNNNNNGTC	1 cut(s)	937
BmeT110I	CYCGRG	2 cut(s)	54, 563
BmgBI	CACGTC	1 cut(s)	757
BmiI	GGNNCC	2 cut(s)	86, 367
BmrFI	CCNGG	2 cut(s)	514, 770
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpuEI	CTTGAG	1 cut(s)	680
BsaJI	CCNNGG	4 cut(s)	138, 223, 369, 614
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 899, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	2 cut(s)	609, 626
BseBI	CCWGG	2 cut(s)	514, 770
BseDI	CCNNGG	4 cut(s)	138, 223, 369, 614
BseGI	GGATG	2 cut(s)	283, 415
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	50, 378
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	6 cut(s)	5, 222, 240, 460, 609, 613
BsiHKAI	GWGCWC	2 cut(s)	387, 653
BsiHKCI	CYCGRG	2 cut(s)	54, 563
BsiSI	CCGG	2 cut(s)	610, 627
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	6 cut(s)	5, 222, 240, 460, 609, 613
BsoBI	CYCGRG	2 cut(s)	54, 563
Bsp1286I	GDGCHC	2 cut(s)	387, 653
Bsp143I	GATC	1 cut(s)	655
Bsp19I	CCATGG	2 cut(s)	138, 223
BspANI	GGCC	6 cut(s)	5, 222, 240, 460, 609, 613
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	86, 367
BspPI	GGATC	1 cut(s)	663
BsrFI	RCCGGY	2 cut(s)	609, 626
BssAI	RCCGGY	2 cut(s)	609, 626
BssECI	CCNNGG	4 cut(s)	138, 223, 369, 614
BssMI	GATC	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	138, 223
Bst2UI	CCWGG	2 cut(s)	514, 770
Bst4CI	ACNGT	3 cut(s)	164, 284, 599
Bst6I	CTCTTC	2 cut(s)	27, 669
BstAPI	GCANNNNNTGC	2 cut(s)	194, 811
BstC8I	GCNNGC	4 cut(s)	180, 190, 238, 611
BstDSI	CCRYGG	3 cut(s)	138, 223, 369
BstEII	GGTNACC	1 cut(s)	679
BstF5I	GGATG	2 cut(s)	283, 415
BstKTI	GATC	1 cut(s)	658
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 246, 811
BstNI	CCWGG	2 cut(s)	514, 770
BstNSI	RCATGY	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	512, 768
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	655
BstXI	CCANNNNNNTGG	2 cut(s)	405, 801
BstYI	RGATCY	1 cut(s)	655
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	6 cut(s)	5, 222, 240, 460, 609, 613
BtgI	CCRYGG	3 cut(s)	138, 223, 369
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	283, 415
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	4 cut(s)	180, 190, 238, 611
CciI	TCATGA	1 cut(s)	751
Cfr10I	RCCGGY	2 cut(s)	609, 626
Csp6I	GTAC	4 cut(s)	165, 285, 560, 790
CviAII	CATG	8 cut(s)	75, 128, 139, 157, 224, 704, 752, 806
CviQI	GTAC	4 cut(s)	165, 285, 560, 790
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
DriI	GACNNNNNGTC	1 cut(s)	937
Eam1104I	CTCTTC	2 cut(s)	27, 669
Eam1105I	GACNNNNNGTC	1 cut(s)	937
EarI	CTCTTC	2 cut(s)	27, 669
Ecl136II	GAGCTC	1 cut(s)	651
Eco130I	CCWWGG	2 cut(s)	138, 223
Eco147I	AGGCCT	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	651
Eco88I	CYCGRG	2 cut(s)	54, 563
Eco91I	GGTNACC	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	651
EcoO65I	GGTNACC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	512, 768
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	138, 223
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	2 cut(s)	138, 223
FaeI	CATG	8 cut(s)	78, 131, 142, 160, 227, 707, 755, 809
FatI	CATG	8 cut(s)	74, 127, 138, 156, 223, 703, 751, 805
FauNDI	CATATG	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	2 cut(s)	290, 422
FriOI	GRGCYC	1 cut(s)	653
FseI	GGCCGGCC	1 cut(s)	613
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	695, 765
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	6 cut(s)	5, 222, 240, 460, 609, 613
HapII	CCGG	2 cut(s)	610, 627
Hin1II	CATG	8 cut(s)	78, 131, 142, 160, 227, 707, 755, 809
HindIII	AAGCTT	2 cut(s)	65, 259
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	2 cut(s)	610, 627
HphI	GGTGA	4 cut(s)	145, 658, 673, 733
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	10, 655, 856
Hpy188III	TCNNGA	3 cut(s)	54, 659, 752
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	3 cut(s)	11, 212, 239
HpyCH4III	ACNGT	3 cut(s)	164, 284, 599
HpyCH4IV	ACGT	3 cut(s)	546, 756, 922
HpyCH4V	TGCA	8 cut(s)	78, 147, 170, 385, 416, 428, 446, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 246, 811
HpySE526I	ACGT	3 cut(s)	546, 756, 922
Hsp92II	CATG	8 cut(s)	78, 131, 142, 160, 227, 707, 755, 809
KroI	GCCGGC	1 cut(s)	609
KroNI	GCCGGC	1 cut(s)	611
Kzo9I	GATC	1 cut(s)	655
LmnI	GCTCC	2 cut(s)	90, 365
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	695, 765
MaeII	ACGT	3 cut(s)	546, 756, 922
MaeIII	GTNAC	3 cut(s)	599, 679, 721
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MboII	GAAGA	5 cut(s)	44, 109, 686, 722, 796
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	387, 653
MluCI	AATT	3 cut(s)	49, 452, 895
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	533, 885
MroNI	GCCGGC	1 cut(s)	609
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	47, 113
MslI	CAYNNNNRTG	3 cut(s)	79, 155, 433
MspA1I	CMGCKG	1 cut(s)	867
MspI	CCGG	2 cut(s)	610, 627
MspR9I	CCNGG	2 cut(s)	514, 770
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	514, 770
MwoI	GCNNNNNNNGC	3 cut(s)	194, 246, 811
NaeI	GCCGGC	1 cut(s)	611
NcoI	CCATGG	2 cut(s)	138, 223
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	1 cut(s)	655
NgoMIV	GCCGGC	1 cut(s)	609
NlaIII	CATG	8 cut(s)	78, 131, 142, 160, 227, 707, 755, 809
NlaIV	GGNNCC	2 cut(s)	86, 367
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	2 cut(s)	679, 721
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	54
PagI	TCATGA	1 cut(s)	751
PceI	AGGCCT	1 cut(s)	240
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	611
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	512, 768
PspEI	GGTNACC	1 cut(s)	679
PspGI	CCWGG	2 cut(s)	512, 768
PspN4I	GGNNCC	2 cut(s)	86, 367
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	867
RigI	GGCCGGCC	1 cut(s)	613
RsaI	GTAC	4 cut(s)	166, 286, 561, 791
RsaNI	GTAC	4 cut(s)	165, 285, 560, 790
RseI	CAYNNNNRTG	3 cut(s)	79, 155, 433
SacI	GAGCTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	47, 113
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	655
ScaI	AGTACT	1 cut(s)	166
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	514, 770
SduI	GDGCHC	2 cut(s)	387, 653
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	3 cut(s)	79, 155, 433
SmlI	CTYRAG	2 cut(s)	54, 659
SmoI	CTYRAG	2 cut(s)	54, 659
Sse9I	AATT	3 cut(s)	49, 452, 895
SseBI	AGGCCT	1 cut(s)	240
SspMI	CTAG	2 cut(s)	695, 765
SstI	GAGCTC	1 cut(s)	653
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	512, 768
StyI	CCWWGG	2 cut(s)	138, 223
TaaI	ACNGT	3 cut(s)	164, 284, 599
TaiI	ACGT	3 cut(s)	549, 759, 925
TaqI	TCGA	2 cut(s)	55, 543
TasI	AATT	3 cut(s)	49, 452, 895
TatI	WGTACW	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	47, 113
Tru9I	TTAA	2 cut(s)	47, 113
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	679, 721
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	2 cut(s)	679, 721
TspDTI	ATGAA	8 cut(s)	31, 45, 109, 173, 231, 465, 493, 740
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	78
XhoI	CTCGAG	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	695, 765
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.