Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Reverse (-)

11754311 .. 11756400

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAAATGGCTTCCAGAAAACAACAAGCCCCGAAAGCCTTGATCTTCTTCTGTCATGGATACGCCATGGAGTGCAGCATCACCATGAACAGTACTGCAATCAGACTAGTCAGAGCAGGCTTTGCCATATATGGGATAGACTATGAAGGCCATGGAAAATCAGCTGGCCTTGCAGGCTTTGTCAAAAGCTTTGATGATGTTGTCGATGACTGCACCGCTTACTTCACAAAGATTTGCGAGAGCAAAGAAAACAAAGGGAAGATGAGGTATCTGTTGGGAGAGTCAATGGGAGGAGCTGTGGCTCTGCTTGTTCATAGGAAAAAGCCAGAATATTGGGATGGTGCGGTCTTAGTTGCCCCCATGTGTAAGATTGCAGATGAAATGAGGCCATCTCCGATTGTGGTCAGTGTTTTGACAAAGCTCTGCAGGGTTATTCCAACTTGGAAAATAATCCCTACAAATGATGTCATTGATTTAGCTTTCAAAGTACCCGAGGTTAGAAAACAGGTTAGGGAAAACCCCTACTGTTACAAAGGCCGTCCTCGTCTGCAGACCGGCTACGAACTCTTGAGGGTCAGCACGGAGCTTGAGCAAAGGCTTCAAGAGGTCACGTTGCCGTTTATAGTCCTCCACGGCGAAGACGATAAAGTCACTGACACCTCGGTTAGTAAACAACTCCATGAGGTGGCGTCGAGTTATGATAAGACATTGAAGTTGTACCCGAAAATGTGGCATGGTCTACTCTATGGAGAGCCACTTGAGAACATTGAGGTTGTGTTTTCGGACATAATCAATTGGTTAGACAAAAGATGTTCCATGGTAAATTCAAGGTTGGAGGGAGAGTTGAAGAGGGAGAATGACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

289

Amino Acids

32.84

Weight (kDa)

8.31

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	10 - 248	7.6e-66	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	14 - 121	5.4e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	15 - 247	1.7e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	739
AciI	CCGC	2 cut(s)	216, 344
AcsI	RAATTY	1 cut(s)	823
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	3 cut(s)	94, 489, 719
AfiI	CCNNNNNNNGG	2 cut(s)	132, 685
AgsI	TTSAA	5 cut(s)	484, 602, 712, 828, 847
AhlI	ACTAGT	1 cut(s)	106
AluBI	AGCT	6 cut(s)	164, 189, 296, 421, 479, 586
AluI	AGCT	6 cut(s)	164, 189, 296, 421, 479, 586
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	4 cut(s)	148, 166, 386, 535
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	823
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	332, 397
BceAI	ACGGC	3 cut(s)	522, 601, 649
BciVI	GTATCC	1 cut(s)	53
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	2 cut(s)	424, 548
BfuI	GTATCC	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
BmcAI	AGTACT	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpuEI	CTTGAG	3 cut(s)	589, 608, 779
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	6 cut(s)	66, 151, 492, 631, 660, 816
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 827, 857
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 685
Bse118I	RCCGGY	1 cut(s)	554
BseDI	CCNNGG	6 cut(s)	66, 151, 492, 631, 660, 816
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	132, 685
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	87
BsgI	GTGCAG	2 cut(s)	94, 196
BshFI	GGCC	4 cut(s)	150, 168, 388, 537
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	132, 685
BsnI	GGCC	4 cut(s)	150, 168, 388, 537
BsoBI	CYCGRG	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	3 cut(s)	66, 151, 816
BspACI	CCGC	2 cut(s)	216, 344
BspANI	GGCC	4 cut(s)	150, 168, 388, 537
BspMAI	CTGCAG	2 cut(s)	428, 552
BsrFI	RCCGGY	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	6 cut(s)	66, 151, 492, 631, 660, 816
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	3 cut(s)	66, 151, 816
Bst4CI	ACNGT	2 cut(s)	92, 527
Bst6I	CTCTTC	1 cut(s)	842
BstACI	GRCGYC	1 cut(s)	689
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	118, 166, 175
BstDEI	CTNAG	1 cut(s)	349
BstDSI	CCRYGG	4 cut(s)	66, 151, 631, 816
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 122, 170, 174
BstSFI	CTRYAG	2 cut(s)	424, 548
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	150, 168, 388, 537
BtgI	CCRYGG	4 cut(s)	66, 151, 631, 816
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	2 cut(s)	412, 651
Cac8I	GCNNGC	3 cut(s)	118, 166, 175
Cfr10I	RCCGGY	1 cut(s)	554
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	93, 488, 718
CviAII	CATG	8 cut(s)	56, 67, 85, 152, 361, 680, 734, 817
CviQI	GTAC	3 cut(s)	93, 488, 718
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
Eco130I	CCWWGG	3 cut(s)	66, 151, 816
Eco88I	CYCGRG	1 cut(s)	491
EcoT14I	CCWWGG	3 cut(s)	66, 151, 816
ErhI	CCWWGG	3 cut(s)	66, 151, 816
FaeI	CATG	8 cut(s)	59, 70, 88, 155, 364, 683, 737, 820
FatI	CATG	8 cut(s)	55, 66, 84, 151, 360, 679, 733, 816
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	76
HaeIII	GGCC	4 cut(s)	150, 168, 388, 537
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	1 cut(s)	678
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	8 cut(s)	59, 70, 88, 155, 364, 683, 737, 820
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	671, 740
Hpy188I	TCNGA	4 cut(s)	104, 113, 396, 784
Hpy188III	TCNNGA	3 cut(s)	15, 568, 602
Hpy8I	GTNNAC	2 cut(s)	671, 740
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	92, 527
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	8 cut(s)	4, 75, 98, 173, 213, 374, 426, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 122, 170, 174
HpyF3I	CTNAG	1 cut(s)	349
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	8 cut(s)	59, 70, 88, 155, 364, 683, 737, 820
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	293, 583
LpnPI	CCDG	8 cut(s)	28, 102, 150, 159, 339, 412, 491, 568
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	3 cut(s)	527, 607, 649
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	5 cut(s)	37, 40, 271, 650, 859
MfeI	CAATTG	1 cut(s)	793
MluCI	AATT	2 cut(s)	793, 823
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	461, 813
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	793
MwoI	GCNNNNNNNGC	4 cut(s)	35, 122, 170, 174
NcoI	CCATGG	3 cut(s)	66, 151, 816
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	8 cut(s)	59, 70, 88, 155, 364, 683, 737, 820
NmuCI	GTSAC	2 cut(s)	607, 649
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PflMI	CCANNNNNTGG	1 cut(s)	685
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PstI	CTGCAG	2 cut(s)	428, 552
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	3 cut(s)	94, 489, 719
RsaNI	GTAC	3 cut(s)	93, 488, 718
RseI	CAYNNNNRTG	1 cut(s)	83
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	424, 548
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	568, 587, 758
SmoI	CTYRAG	3 cut(s)	568, 587, 758
SpeI	ACTAGT	1 cut(s)	106
Sse9I	AATT	2 cut(s)	793, 823
SsiI	CCGC	2 cut(s)	216, 344
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	107
StyI	CCWWGG	3 cut(s)	66, 151, 816
TaaI	ACNGT	2 cut(s)	92, 527
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	2 cut(s)	204, 692
TasI	AATT	2 cut(s)	793, 823
TatI	WGTACW	1 cut(s)	92
TscAI	CASTG	2 cut(s)	412, 658
TseFI	GTSAC	2 cut(s)	607, 649
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	2 cut(s)	607, 649
TspDTI	ATGAA	4 cut(s)	101, 159, 302, 393
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	2 cut(s)	412, 658
Van91I	CCANNNNNTGG	1 cut(s)	685
XapI	RAATTY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.