Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Forward (+)

5397590 .. 5398511

Gene Structure 922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016285

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCAGTGATATGGGGAATGTCAAATACGAAGAGGAGTACATCTTAAACTCTAGAGGATTGAAGCTTTTCACATGCAAGTGGCTTCCGGACAATAACAAACCTCCCAAAGCCTTGATCTTCATCTGCCATGGATATGGCATGGAGTGTAGCATCACCATGAGCAGTACCGCAACCAGACTAGCCAAAGCGGGGTTTGCCATATACGGGATAGATTATGAAGGCCATGGAAGATCGTCAGGCCTTAAGGGCTATGTCAAGAGTTTTGATCGTGTTGTTGACGACTGCACCAACCACTTCACAAACATATGTGAGAACAAAGAGAACAAAGGAAAAATGAGGTATCTGTTGGGGGAGTCAATGGGAGGAGCAGTGGCTCTACTTGTTCATAGGAGACAGCCACAATATTGGGATGGTGCGGTCTTAGCTGCACCCATGTGTAGGATTGCAGATGATATGAGACCATCTCCTATTGTGATCAGTCTTTTGAAAAAACTCTGCAGGGTCATCCCAACTTGGAAAATAATCCCTACAAATGATATCATCGATGTTGCTTTTAAAGTACCCGAGGTTAGGAAACAGACGAGAGAAAACCCTTACTTCTACAAAGGCCGACCTCGTCTGAAAACAGGCTACGAACTTTTGAGGACAGGAGAAGCACCTCCGGAACTTCAAGGTCGGAGGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

231

Amino Acids

26.04

Weight (kDa)

9.26

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	35 - 219	2.1e-46	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 149	3.5e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	41 - 156	2.2e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	88, 664
AciI	CCGC	3 cut(s)	171, 191, 419
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	41, 169, 564
AfiI	CCNNNNNNNGG	4 cut(s)	192, 207, 441, 573
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	64, 490, 674
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	67, 428
AluI	AGCT	2 cut(s)	67, 428
Alw26I	GTCTC	2 cut(s)	388, 454
Ama87I	CYCGRG	1 cut(s)	566
Aor13HI	TCCGGA	2 cut(s)	88, 664
AoxI	GGCC	4 cut(s)	3, 223, 241, 610
ApeKI	GCWGC	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	407, 472
BclI	TGATCA	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	388, 454
BfaI	CTAG	2 cut(s)	54, 182
BfmI	CTRYAG	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
Bsa29I	ATCGAT	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	130, 226, 567
BsaWI	WCCGGW	2 cut(s)	88, 664
BsaXI	ACNNNNNCTCC	3 cut(s)	357, 387, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 207, 441, 573
Bse1I	ACTGG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	2 cut(s)	88, 664
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	130, 226, 567
BseGI	GGATG	2 cut(s)	418, 507
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	4 cut(s)	192, 207, 441, 573
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	2 cut(s)	50, 381
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	2 cut(s)	271, 414
BshFI	GGCC	4 cut(s)	5, 225, 243, 612
BshVI	ATCGAT	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	89, 665
BslI	CCNNNNNNNGG	4 cut(s)	192, 207, 441, 573
BsmAI	GTCTC	2 cut(s)	388, 454
BsnI	GGCC	4 cut(s)	5, 225, 243, 612
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	566
Bsp13I	TCCGGA	2 cut(s)	88, 664
Bsp143I	GATC	4 cut(s)	117, 233, 268, 477
Bsp19I	CCATGG	2 cut(s)	130, 226
BspACI	CCGC	3 cut(s)	171, 191, 419
BspANI	GGCC	4 cut(s)	5, 225, 243, 612
BspDI	ATCGAT	1 cut(s)	546
BspEI	TCCGGA	2 cut(s)	88, 664
BspMAI	CTGCAG	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	130, 226, 567
BssMI	GATC	4 cut(s)	117, 233, 268, 477
BssT1I	CCWWGG	2 cut(s)	130, 226
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	424
BstDSI	CCRYGG	2 cut(s)	130, 226
BstF5I	GGATG	2 cut(s)	418, 507
BstKTI	GATC	4 cut(s)	120, 236, 271, 480
BstMAI	GTCTC	2 cut(s)	388, 454
BstMBI	GATC	4 cut(s)	117, 233, 268, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 249, 425
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	415
BstXI	CCANNNNNNTGG	3 cut(s)	13, 137, 408
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	5, 225, 243, 612
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	2 cut(s)	130, 226
BtsCI	GGATG	2 cut(s)	418, 507
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	13, 378
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	3 cut(s)	40, 168, 563
CviAII	CATG	6 cut(s)	75, 131, 142, 160, 227, 436
CviQI	GTAC	3 cut(s)	40, 168, 563
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	4 cut(s)	119, 235, 270, 479
DpnII	GATC	4 cut(s)	117, 233, 268, 477
DraI	TTTAAA	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	130, 226
Eco147I	AGGCCT	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	566
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	130, 226
ErhI	CCWWGG	2 cut(s)	130, 226
FaeI	CATG	6 cut(s)	78, 134, 145, 163, 230, 439
FatI	CATG	6 cut(s)	74, 130, 141, 159, 226, 435
FauI	CCCGC	1 cut(s)	184
FauNDI	CATATG	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	425, 494
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	54, 182
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	4 cut(s)	5, 225, 243, 612
HapII	CCGG	2 cut(s)	89, 665
Hin1II	CATG	6 cut(s)	78, 134, 145, 163, 230, 439
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	89, 665
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	624, 681
Hpy188III	TCNNGA	4 cut(s)	54, 89, 259, 665
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	78, 288, 431, 449, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 249, 425
HpyF3I	CTNAG	1 cut(s)	424
Hsp92II	CATG	6 cut(s)	78, 134, 145, 163, 230, 439
Kpn2I	TCCGGA	2 cut(s)	88, 664
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	117, 233, 268, 477
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	8 cut(s)	19, 102, 190, 225, 487, 615, 636, 678
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	54, 182
MalI	GATC	4 cut(s)	119, 235, 270, 479
MboI	GATC	4 cut(s)	117, 233, 268, 477
MboII	GAAGA	3 cut(s)	44, 112, 243
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	659
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	2 cut(s)	88, 664
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	47, 246, 558
MslI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	89, 665
MwoI	GCNNNNNNNGC	3 cut(s)	197, 249, 425
NcoI	CCATGG	2 cut(s)	130, 226
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	4 cut(s)	117, 233, 268, 477
NlaIII	CATG	6 cut(s)	78, 134, 145, 163, 230, 439
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	618
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	618
RsaI	GTAC	3 cut(s)	41, 169, 564
RsaNI	GTAC	3 cut(s)	40, 168, 563
RseI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
SaqAI	TTAA	3 cut(s)	47, 246, 558
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	117, 233, 268, 477
SchI	GAGTC	1 cut(s)	365
SetI	ASST	8 cut(s)	69, 106, 344, 430, 573, 619, 664, 679
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	4 cut(s)	79, 135, 158, 436
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	3 cut(s)	171, 191, 419
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	2 cut(s)	54, 182
StuI	AGGCCT	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	130, 226
TaqI	TCGA	1 cut(s)	546
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	3 cut(s)	47, 246, 558
Tru9I	TTAA	3 cut(s)	47, 246, 558
TscAI	CASTG	2 cut(s)	13, 378
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	112, 234, 377
TspRI	CASTG	2 cut(s)	13, 378
Tth111I	GACNNNGTC	1 cut(s)	618
Vha464I	CTTAAG	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	54, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.