Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006108

Physical Location & Seq

Genomic Coordinates Forward (+)

26945274 .. 26948322

Gene Structure 3049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1188700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCATCTGACATGGATGGTGTCAAATATGAAGAGGAGTACATCTTAAATTCTAGAGGCATGAAGCTTTTCACATGCAGATGGCTCCCGAATAACACCAAACCCAAAGCATTAATCTTTATCTGCCATGGATACGGCATGGAATGCAGCATCACCATGAACAGCACCGCAATCAGGCTAGCCAAAGCACGCTTTGCCATATATGGAATAGACTATGAAGGTCATGGAAAATCAGCAGGCCTACAAGGTTACGTGAAGAGTTTTGATGATGTGGTGGATGACTGTACCAACCACTTCACAAACATATGTGAGAGCAAAGACAACAAGGGAAGGATGAGGTATCTAATGGGGGAGTCAATGGGAGGAGCTGTGGCTCTGCTGGTGCACAGGAAAAAGCCAGACTTTTGGGATGGTGCGGTTTTGGTTGCGCCCATGTGTAAGATTGCAGATGAGCTGAGGCCATCCCCATTAGTGATCAGTGCTTTGACAAAGCTCTGCAAGTTCATTCCGACCTGGAAAATAATCCCCACAAATGATATTATTGATGTTGCTTTCAAAATGCCTGAAATAAGAAAACAGGTTAGAGAAAACCCCTACTGCTACAAAGGCCGGCCTCGTCTCCAAACCGGCTACGAACTTTTGAGGGTCAGTTCGGACCTTGAACAGAGGCTCGACGAGGTCACGTTGCCGTTCATAGTTCTCCATGGTGAAGACGATAAGGTTACCGACAACTCCGTCAGCAAACAACTCCATGAGGTAGCCGCCTCCCATGACAAGACGTTGAAGATGTACCCGGATATGTGGCATGGACTGCTATATGGAGAAACACCTGAAAACATTGAGGTTGTTTTTTCTGATATAATTAGTTGGTTGGATGAGAGAAGTTGCTTTGGAAATGCAAGGCTGGAGGGAGAATTAAAACGTGAAAACGACGATTTACCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

316

Amino Acids

35.86

Weight (kDa)

5.95

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	34 - 272	1e-64	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	38 - 147	9.2e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 278	6.8e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39400 AT2G39420
fragaria_vesca	FvH4_1g06460 FvH4_7g20970
malus_domestica	MD07G1188700.v1.1
prunus_persica	Prupe.2G226400_v2.0.a1
pyrus_communis	pycom07g17880
rosa_chinensis	RchiOBHm_Chr1g0365331 RchiOBHm_Chr2g0092201
rosa_laevigata	RLG00000016285 RLG00000027429
rosa_multiflora	Rmu_sc0000524.1_g000023 Rmu_sc0010918.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149380 Rroxscaffold_4G00291300
rosa_rugosa	Rorug01G0321200.1 Rorug02G0023600
rosa_samantha	Rh1AG330100 Rh1BG291500 Rh1CG308100 Rh1DG323200 Rh2AG069400 Rh2BG068900 Rh2CG070100 Rh2DG068000
rosa_wichuraiana	Rw1G029270 Rw2G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
AciI	CCGC	3 cut(s)	168, 416, 762
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	3 cut(s)	41, 286, 791
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	556, 662, 784
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	4 cut(s)	67, 368, 454, 493
AluI	AGCT	4 cut(s)	67, 368, 454, 493
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	623
Alw44I	GTGCAC	1 cut(s)	383
AoxI	GGCC	4 cut(s)	238, 458, 607, 611
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	49
AseI	ATTAAT	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	655
AsuC2I	CCSGG	1 cut(s)	794
AsuHPI	GGTGA	2 cut(s)	145, 719
AsuNHI	GCTAGC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	4 cut(s)	11, 75, 404, 469
BceAI	ACGGC	2 cut(s)	151, 673
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	54, 179
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	148, 762
BlsI	GCNGC	2 cut(s)	149, 763
Bme1390I	CCNGG	2 cut(s)	514, 794
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	514, 794
BmsI	GCATC	2 cut(s)	14, 159
BmtI	GCTAGC	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	794
BsaAI	YACGTR	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	127, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	2 cut(s)	609, 626
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	127, 703
BseGI	GGATG	6 cut(s)	22, 283, 339, 415, 461, 880
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	50, 378
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	4 cut(s)	240, 460, 609, 613
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	3 cut(s)	610, 627, 794
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	623
BsmBI	CGTCTC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	240, 460, 609, 613
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	474
Bsp19I	CCATGG	2 cut(s)	127, 703
BspACI	CCGC	3 cut(s)	168, 416, 762
BspANI	GGCC	4 cut(s)	240, 460, 609, 613
BspCNI	CTCAG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	182
BsrFI	RCCGGY	2 cut(s)	609, 626
BssAI	RCCGGY	2 cut(s)	609, 626
BssECI	CCNNGG	2 cut(s)	127, 703
BssMI	GATC	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	127, 703
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	27, 251
BstAPI	GCANNNNNTGC	3 cut(s)	144, 194, 811
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	180, 190, 238, 611
BstDEI	CTNAG	1 cut(s)	455
BstDSI	CCRYGG	2 cut(s)	127, 703
BstEII	GGTNACC	1 cut(s)	721
BstF5I	GGATG	6 cut(s)	22, 283, 339, 415, 461, 880
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 194, 606, 811
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	512, 792
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	4 cut(s)	240, 460, 609, 613
BtgI	CCRYGG	2 cut(s)	127, 703
BtsCI	GGATG	6 cut(s)	22, 283, 339, 415, 461, 880
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	4 cut(s)	180, 190, 238, 611
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	2 cut(s)	609, 626
Cfr13I	GGNCC	1 cut(s)	655
Csp6I	GTAC	3 cut(s)	40, 285, 790
CviQI	GTAC	3 cut(s)	40, 285, 790
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1104I	CTCTTC	2 cut(s)	27, 251
EarI	CTCTTC	2 cut(s)	27, 251
Eco130I	CCWWGG	2 cut(s)	127, 703
Eco147I	AGGCCT	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	655
Eco91I	GGTNACC	1 cut(s)	721
EcoO65I	GGTNACC	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	2 cut(s)	127, 703
ErhI	CCWWGG	2 cut(s)	127, 703
Esp3I	CGTCTC	1 cut(s)	623
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	148, 762
FokI	GGATG	6 cut(s)	29, 290, 346, 422, 448, 887
FseI	GGCCGGCC	1 cut(s)	613
Fsp4HI	GCNGC	2 cut(s)	148, 762
FspBI	CTAG	2 cut(s)	54, 179
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	2 cut(s)	148, 762
GsuI	CTGGAG	1 cut(s)	926
HaeIII	GGCC	4 cut(s)	240, 460, 609, 613
HapII	CCGG	3 cut(s)	610, 627, 794
HhaI	GCGC	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	3 cut(s)	610, 627, 794
HphI	GGTGA	2 cut(s)	145, 719
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	4 cut(s)	10, 510, 655, 856
Hpy188III	TCNNGA	2 cut(s)	54, 88
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	2 cut(s)	677, 935
HpyAV	CCTTC	2 cut(s)	212, 324
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	4 cut(s)	252, 683, 779, 922
HpyCH4V	TGCA	6 cut(s)	78, 147, 385, 446, 498, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 194, 606, 811
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	4 cut(s)	252, 683, 779, 922
HspAI	GCGC	1 cut(s)	428
KroI	GCCGGC	1 cut(s)	609
KroNI	GCCGGC	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	90, 365
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	14, 159
MaeI	CTAG	2 cut(s)	54, 179
MaeII	ACGT	4 cut(s)	252, 683, 779, 922
MaeIII	GTNAC	3 cut(s)	248, 679, 721
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	4 cut(s)	44, 268, 722, 796
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	3 cut(s)	49, 861, 914
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	533, 852
MroNI	GCCGGC	1 cut(s)	609
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	3 cut(s)	47, 113, 917
MslI	CAYNNNNRTG	2 cut(s)	79, 155
MspI	CCGG	3 cut(s)	610, 627, 794
MspR9I	CCNGG	2 cut(s)	514, 794
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	4 cut(s)	144, 194, 606, 811
NaeI	GCCGGC	1 cut(s)	611
NciI	CCSGG	1 cut(s)	794
NcoI	CCATGG	2 cut(s)	127, 703
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	1 cut(s)	474
NgoMIV	GCCGGC	1 cut(s)	609
NheI	GCTAGC	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	679
NspI	RCATGY	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	240
PctI	GAATGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	611
PdmI	GAANNNNTTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	149, 763
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	655
PsyI	GACNNNGTC	1 cut(s)	677
RigI	GGCCGGCC	1 cut(s)	613
RsaI	GTAC	3 cut(s)	41, 286, 791
RsaNI	GTAC	3 cut(s)	40, 285, 790
RseI	CAYNNNNRTG	2 cut(s)	79, 155
SaqAI	TTAA	3 cut(s)	47, 113, 917
SatI	GCNGC	2 cut(s)	148, 762
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	514, 794
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	2 cut(s)	14, 159
SinI	GGWCC	1 cut(s)	655
SmiMI	CAYNNNNRTG	2 cut(s)	79, 155
Sse9I	AATT	3 cut(s)	49, 861, 914
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	3 cut(s)	168, 416, 762
SspMI	CTAG	2 cut(s)	54, 179
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	512, 792
StyI	CCWWGG	2 cut(s)	127, 703
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	4 cut(s)	255, 686, 782, 925
TaqI	TCGA	1 cut(s)	672
TasI	AATT	3 cut(s)	49, 861, 914
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	764
Tru1I	TTAA	3 cut(s)	47, 113, 917
Tru9I	TTAA	3 cut(s)	47, 113, 917
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	6 cut(s)	45, 77, 173, 231, 493, 682
TspGWI	ACGGA	1 cut(s)	724
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	655
VspI	ATTAAT	1 cut(s)	113
XapI	RAATTY	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	54, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.