Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

16708379 .. 16710772

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGGTGAAAGCAACAAAGGCGGAGAAGAAGATCGTTTACGATTCAAAGCTTTGTCAGCTTTTGAATGAGTACTCTCAGATTCTTGTCGTTGCAGCTGACAATGTTGGATCAACTCAGCTTCAGAACATAAGGAAAGGTTTACGAGGTGATTCAGTTGTTTTGATGGGGAAGAACACAATGATGAAGAGATCTGTGAGGATTCATGCTGATAAAACTGGCAATCAAGCTTTCCTCAGTCTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGGAAGTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAGTCGCTCCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACCTCCTTCTTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCCCTGTGGAGCTCATCAAGAAAGGCGACAAAGTCGGTTCATCCGAGGCTGCGCTTCTTGCCAAGCTTGGAATCAGGCCCTTTTCGTATGGTCTCGTTGTTGAGTCAGTCTACGATAATGGGTCAGTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAGCTGGTGTCTCGATGATCACTGCGCTTTCTCTTGCAATCTCTTACCCAACCGTAGCAGCTGCGCCTCACATGTTCCTCAATGCTTACAAGAACGTTCTTGCTGTTGCCTTAGCTACTGAGTACTCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTTGCAGTTGCAGTGGCTGCACCGGTTTCAGGAGAGTCTGGTGGAGCAGTGGTGGCAGTAGCTGTTGAGGAAGAAGCTGCAGAAGAGTCTGATGGGGACATGGGATTTGATCTGTTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

317

Amino Acids

33.67

Weight (kDa)

5.19

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	8 - 108	4.1e-17	Ribosomal protein L10
RL10P_insert	PF17777	114 - 183	1.8e-21	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	234 - 316	5.4e-17	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	2 cut(s)	5, 23
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	3 cut(s)	118, 815, 828
AcuI	CTGAAG	4 cut(s)	107, 239, 633, 651
AfaI	GTAC	4 cut(s)	74, 323, 460, 779
AfiI	CCNNNNNNNGG	1 cut(s)	860
AflIII	ACRYGT	1 cut(s)	726
AgeI	ACCGGT	1 cut(s)	853
AgsI	TTSAA	3 cut(s)	48, 67, 295
AjnI	CCWGG	2 cut(s)	382, 423
Alw21I	GWGCWC	2 cut(s)	337, 489
Alw26I	GTCTC	3 cut(s)	245, 572, 670
AlwI	GGATC	3 cut(s)	118, 815, 828
AlwNI	CAGNNNCTG	2 cut(s)	848, 893
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	7 cut(s)	95, 524, 656, 713, 716, 848, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	920, 952
AsiGI	ACCGGT	1 cut(s)	853
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	3 cut(s)	529, 682, 721
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	19, 161, 299
AxyI	CCTNAGG	1 cut(s)	789
BamHI	GGATCC	1 cut(s)	820
BanII	GRGCYC	2 cut(s)	337, 489
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	2 cut(s)	337, 489
BbvI	GCAGC	7 cut(s)	107, 511, 668, 703, 725, 835, 895
BccI	CCATC	2 cut(s)	160, 917
BciT130I	CCWGG	2 cut(s)	384, 425
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	3 cut(s)	245, 572, 670
BfmI	CTRYAG	1 cut(s)	909
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	7 cut(s)	96, 525, 657, 714, 717, 849, 909
BlsI	GCNGC	7 cut(s)	97, 526, 658, 715, 718, 850, 910
BmcAI	AGTACT	2 cut(s)	74, 779
Bme1390I	CCNGG	2 cut(s)	384, 425
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	2 cut(s)	384, 425
BpiI	GAAGAC	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	766
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	853
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse118I	RCCGGY	1 cut(s)	853
Bse1I	ACTGG	2 cut(s)	223, 397
Bse21I	CCTNAGG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	384, 425
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMII	CTCAG	6 cut(s)	92, 131, 250, 765, 786, 803
BseNI	ACTGG	2 cut(s)	223, 397
BseXI	GCAGC	7 cut(s)	107, 511, 668, 703, 725, 835, 895
BsgI	GTGCAG	1 cut(s)	834
BshFI	GGCC	1 cut(s)	553
BshTI	ACCGGT	1 cut(s)	853
BsiHKAI	GWGCWC	2 cut(s)	337, 489
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	3 cut(s)	245, 572, 670
BsmFI	GGGAC	1 cut(s)	941
BsnI	GGCC	1 cut(s)	553
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	337, 489
Bsp143I	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
BspACI	CCGC	2 cut(s)	5, 23
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	6 cut(s)	91, 130, 249, 766, 787, 802
BspLI	GGNNCC	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	3 cut(s)	118, 815, 828
BspTNI	GGTCTC	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	223, 397
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	384, 425
Bst4CI	ACNGT	2 cut(s)	463, 709
Bst6I	CTCTTC	4 cut(s)	182, 255, 303, 909
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstDEI	CTNAG	9 cut(s)	78, 117, 236, 282, 318, 766, 774, 789, 795
BstF5I	GGATG	1 cut(s)	515
BstHHI	GCGC	3 cut(s)	529, 682, 721
BstKTI	GATC	8 cut(s)	36, 113, 194, 276, 471, 675, 823, 943
BstMAI	GTCTC	3 cut(s)	245, 572, 670
BstMBI	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 58, 533, 848, 884
BstNI	CCWGG	2 cut(s)	384, 425
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	382, 423
BstSFI	CTRYAG	1 cut(s)	909
BstV1I	GCAGC	7 cut(s)	107, 511, 668, 703, 725, 835, 895
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	2 cut(s)	191, 820
BstYI	RGATCY	2 cut(s)	191, 820
Bsu36I	CCTNAGG	1 cut(s)	789
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	515
BtsI	GCAGTG	3 cut(s)	675, 849, 885
BtsIMutI	CAGTG	7 cut(s)	310, 390, 606, 627, 675, 849, 885
CaiI	CAGNNNCTG	2 cut(s)	848, 893
CfoI	GCGC	3 cut(s)	529, 682, 721
Cfr10I	RCCGGY	1 cut(s)	853
Cfr13I	GGNCC	1 cut(s)	552
Csp6I	GTAC	4 cut(s)	73, 322, 459, 778
CspAI	ACCGGT	1 cut(s)	853
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	206, 727, 931
CviQI	GTAC	4 cut(s)	73, 322, 459, 778
DdeI	CTNAG	9 cut(s)	78, 117, 236, 282, 318, 766, 774, 789, 795
DpnI	GATC	8 cut(s)	35, 112, 193, 275, 470, 674, 822, 942
DpnII	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
Eam1104I	CTCTTC	4 cut(s)	182, 255, 303, 909
EarI	CTCTTC	4 cut(s)	182, 255, 303, 909
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	335, 487
Eco24I	GRGCYC	2 cut(s)	337, 489
Eco31I	GGTCTC	1 cut(s)	572
Eco53kI	GAGCTC	2 cut(s)	335, 487
Eco57I	CTGAAG	4 cut(s)	107, 239, 633, 651
Eco81I	CCTNAGG	1 cut(s)	789
EcoICRI	GAGCTC	2 cut(s)	335, 487
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	382, 423
EcoT38I	GRGCYC	2 cut(s)	337, 489
FaeI	CATG	3 cut(s)	209, 730, 934
FaiI	YATR	6 cut(s)	131, 207, 473, 564, 728, 932
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 624, 656
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	3 cut(s)	205, 726, 930
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	7 cut(s)	96, 525, 657, 714, 717, 849, 909
FokI	GGATG	1 cut(s)	502
FriOI	GRGCYC	2 cut(s)	337, 489
Fsp4HI	GCNGC	7 cut(s)	96, 525, 657, 714, 717, 849, 909
GlaI	GCGC	3 cut(s)	528, 681, 720
GluI	GCNGC	7 cut(s)	96, 525, 657, 714, 717, 849, 909
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	1 cut(s)	854
HhaI	GCGC	3 cut(s)	529, 682, 721
Hin1II	CATG	3 cut(s)	209, 730, 934
Hin6I	GCGC	3 cut(s)	527, 680, 719
HinP1I	GCGC	3 cut(s)	527, 680, 719
HindIII	AAGCTT	3 cut(s)	50, 228, 539
HinfI	GANTC	8 cut(s)	44, 82, 152, 202, 546, 578, 866, 917
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	3 cut(s)	19, 161, 299
Hpy166II	GTNNAC	3 cut(s)	40, 143, 586
Hpy188I	TCNGA	4 cut(s)	81, 126, 520, 922
Hpy188III	TCNNGA	4 cut(s)	398, 493, 667, 861
Hpy8I	GTNNAC	3 cut(s)	40, 143, 586
HpyAV	CCTTC	5 cut(s)	254, 289, 414, 427, 799
HpyCH4III	ACNGT	2 cut(s)	463, 709
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	8 cut(s)	95, 379, 656, 692, 836, 842, 851, 911
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 58, 533, 848, 884
HpyF3I	CTNAG	9 cut(s)	78, 117, 236, 282, 318, 766, 774, 789, 795
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	3 cut(s)	209, 730, 934
HspAI	GCGC	3 cut(s)	527, 680, 719
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
LmnI	GCTCC	5 cut(s)	332, 340, 364, 484, 875
Lsp1109I	GCAGC	7 cut(s)	107, 511, 668, 703, 725, 835, 895
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	8 cut(s)	35, 112, 193, 275, 470, 674, 822, 942
MboI	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	2 cut(s)	191, 820
MhlI	GDGCHC	2 cut(s)	337, 489
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	3 cut(s)	587, 875, 926
MmeI	TCCRAC	4 cut(s)	88, 310, 464, 848
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	4 cut(s)	432, 606, 621, 952
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	98, 659, 716
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	2 cut(s)	384, 425
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	384, 425
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 58, 533, 848, 884
NdeII	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
NlaIII	CATG	3 cut(s)	209, 730, 934
NlaIV	GGNNCC	1 cut(s)	822
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	5 cut(s)	44, 82, 152, 202, 546
PflFI	GACNNNGTC	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	853
PkrI	GCNGC	7 cut(s)	97, 526, 658, 715, 718, 850, 910
PleI	GAGTC	3 cut(s)	586, 874, 925
PpsI	GAGTC	3 cut(s)	586, 874, 925
PscI	ACATGT	1 cut(s)	726
Psp124BI	GAGCTC	2 cut(s)	337, 489
Psp1406I	AACGTT	1 cut(s)	750
Psp6I	CCWGG	2 cut(s)	382, 423
PspGI	CCWGG	2 cut(s)	382, 423
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	2 cut(s)	848, 893
PsuI	RGATCY	2 cut(s)	191, 820
PsyI	GACNNNGTC	1 cut(s)	506
PvuII	CAGCTG	3 cut(s)	98, 659, 716
RsaI	GTAC	4 cut(s)	74, 323, 460, 779
RsaNI	GTAC	4 cut(s)	73, 322, 459, 778
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	2 cut(s)	337, 489
SaqAI	TTAA	4 cut(s)	432, 606, 621, 952
SatI	GCNGC	7 cut(s)	96, 525, 657, 714, 717, 849, 909
Sau3AI	GATC	8 cut(s)	33, 110, 191, 273, 468, 672, 820, 940
Sau96I	GGNCC	1 cut(s)	552
ScaI	AGTACT	2 cut(s)	74, 779
SchI	GAGTC	3 cut(s)	587, 875, 926
ScrFI	CCNGG	2 cut(s)	384, 425
SduI	GDGCHC	2 cut(s)	337, 489
SfcI	CTRYAG	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	5, 23
SstI	GAGCTC	2 cut(s)	337, 489
StyD4I	CCNGG	2 cut(s)	382, 423
TaaI	ACNGT	2 cut(s)	463, 709
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	1 cut(s)	668
TasI	AATT	1 cut(s)	363
TatI	WGTACW	3 cut(s)	72, 321, 777
TfiI	GAWTC	5 cut(s)	44, 82, 152, 202, 546
Tru1I	TTAA	4 cut(s)	432, 606, 621, 952
Tru9I	TTAA	4 cut(s)	432, 606, 621, 952
TscAI	CASTG	7 cut(s)	310, 397, 606, 634, 682, 849, 885
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	7 cut(s)	95, 524, 656, 713, 716, 848, 908
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	194, 200, 504
TspRI	CASTG	7 cut(s)	310, 397, 606, 634, 682, 849, 885
Tth111I	GACNNNGTC	1 cut(s)	506
XceI	RCATGY	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	809
ZrmI	AGTACT	2 cut(s)	74, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.