Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

2823088 .. 2825241

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTGAAAGCAACTAAGGCAGAGAAGAAGATCGCCTACGATACCAAGCTATGTCAGCTTATCGATGAGTACACCCAGATCTTGGTCGTTGCGGCCGATAACGTCGGATCAACTCAGCTTCAGAACATCAGAAAGGGTCTTCGTGGAGACTCCGTCGTGCTTATGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACTCTGAGAACACCGGAAACACTGCAATCCTGAATCTGCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAGGTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTGTGGGTTTGGTGGCTCCAATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCATCCCAAACATCTTTCTTCCAGGTGCTTAACATCCCAACCAAGATTAACAAGGGTACCGTCGAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGGTCGGGTCTTCTGAGGCTGCGCTTCTAGCCAAGCTTGGCATCAGGCCGTTCTCATATGGTCTTGTTGTCCAGTCTGTCTATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTACTGAAGACCAACTTGTGGAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTCTTGCTGTGTCGTACCCTACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGAATGCCTTGGCTATTGCTGTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGGAATACTTGAAGGATCCAAGCAAGTTTGCTGTTGCTTCAGTAGCTGCGGTGTCTGCTGATGCAGGTGGTGGTGCCCCAGCTGCTGCTAAGGTAGAGGAGAAGGAAGAGTCCGACGAAGAAGACTATGGAGGTGATTTCGGTTTGTTCGATGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

320

Amino Acids

34.13

Weight (kDa)

5.0

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	7 - 107	2.5e-17	Ribosomal protein L10
RL10P_insert	PF17777	113 - 182	3.2e-21	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	233 - 317	2e-15	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	857
Acc65I	GGTACC	1 cut(s)	455
AccB1I	GGYRCC	3 cut(s)	329, 455, 875
AccB7I	CCANNNNNTGG	2 cut(s)	82, 640
AciI	CCGC	3 cut(s)	92, 719, 851
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	3 cut(s)	115, 812, 825
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	5 cut(s)	104, 236, 586, 648, 825
AfaI	GTAC	6 cut(s)	71, 320, 457, 698, 740, 776
AfiI	CCNNNNNNNGG	2 cut(s)	82, 640
AgsI	TTSAA	1 cut(s)	814
AjnI	CCWGG	2 cut(s)	379, 420
AluBI	AGCT	7 cut(s)	49, 58, 118, 484, 538, 848, 884
AluI	AGCT	7 cut(s)	49, 58, 118, 484, 538, 848, 884
Alw26I	GTCTC	2 cut(s)	141, 398
AlwI	GGATC	3 cut(s)	115, 812, 825
AlwNI	CAGNNNCTG	2 cut(s)	848, 887
AoxI	GGCC	2 cut(s)	93, 548
ApeKI	GCWGC	6 cut(s)	521, 710, 713, 848, 884, 887
Asp718I	GGTACC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	526
AsuHPI	GGTGA	5 cut(s)	16, 296, 463, 509, 947
BaeGI	GKGCMC	2 cut(s)	334, 880
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	3 cut(s)	329, 455, 875
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	5 cut(s)	131, 504, 592, 636, 930
BbvI	GCAGC	6 cut(s)	508, 697, 700, 835, 871, 874
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	535
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	381, 422
BcoDI	GTCTC	2 cut(s)	141, 398
BfaI	CTAG	1 cut(s)	530
BfuAI	ACCTGC	1 cut(s)	857
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	7 cut(s)	93, 522, 711, 714, 849, 885, 888
BlsI	GCNGC	7 cut(s)	94, 523, 712, 715, 850, 886, 889
Bme1390I	CCNGG	2 cut(s)	381, 422
BmiI	GGNNCC	5 cut(s)	331, 357, 457, 819, 877
BmrFI	CCNGG	2 cut(s)	381, 422
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	552, 853
BmuI	ACTGGG	1 cut(s)	470
BpiI	GAAGAC	5 cut(s)	131, 504, 592, 636, 930
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	2 cut(s)	275, 771
Bsa29I	ATCGAT	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	666, 678, 750
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 640
Bse1I	ACTGG	3 cut(s)	394, 476, 574
BseBI	CCWGG	2 cut(s)	381, 422
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	666, 678, 750
BseGI	GGATG	2 cut(s)	401, 432
BseLI	CCNNNNNNNGG	2 cut(s)	82, 640
BseMII	CTCAG	5 cut(s)	128, 198, 507, 609, 762
BseNI	ACTGG	3 cut(s)	394, 476, 574
BseRI	GAGGAG	2 cut(s)	320, 914
BseSI	GKGCMC	2 cut(s)	334, 880
BseX3I	CGGCCG	1 cut(s)	93
BseXI	GCAGC	6 cut(s)	508, 697, 700, 835, 871, 874
BseYI	CCCAGC	1 cut(s)	880
BsgI	GTGCAG	1 cut(s)	699
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	95, 550
BshNI	GGYRCC	3 cut(s)	329, 455, 875
BshVI	ATCGAT	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	82, 640
BsmAI	GTCTC	2 cut(s)	141, 398
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	95, 550
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	334, 880
Bsp143I	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	3 cut(s)	92, 719, 851
BspANI	GGCC	2 cut(s)	95, 550
BspCNI	CTCAG	5 cut(s)	127, 199, 508, 608, 763
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	5 cut(s)	331, 357, 457, 819, 877
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	3 cut(s)	115, 812, 825
BspT107I	GGYRCC	3 cut(s)	329, 455, 875
BspTNI	GGTCTC	1 cut(s)	398
BsrI	ACTGG	3 cut(s)	394, 476, 574
BssECI	CCNNGG	3 cut(s)	666, 678, 750
BssMI	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	3 cut(s)	666, 678, 750
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	381, 422
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	2 cut(s)	903, 951
BstDEI	CTNAG	8 cut(s)	15, 114, 207, 315, 516, 595, 771, 891
BstDSI	CCRYGG	1 cut(s)	666
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	401, 432
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	6 cut(s)	33, 81, 110, 273, 622, 820
BstMAI	GTCTC	2 cut(s)	141, 398
BstMBI	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 55, 490, 530, 845, 857, 884
BstNI	CCWGG	2 cut(s)	381, 422
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	379, 420
BstSLI	GKGCMC	2 cut(s)	334, 880
BstV1I	GCAGC	6 cut(s)	508, 697, 700, 835, 871, 874
BstV2I	GAAGAC	5 cut(s)	131, 504, 592, 636, 930
BstX2I	RGATCY	2 cut(s)	78, 817
BstYI	RGATCY	2 cut(s)	78, 817
BstZI	CGGCCG	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	95, 550
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	401, 432
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	222, 387, 768
BveI	ACCTGC	1 cut(s)	857
CaiI	CAGNNNCTG	2 cut(s)	848, 887
CfoI	GCGC	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	6 cut(s)	70, 319, 456, 697, 739, 775
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	1 cut(s)	667
CviQI	GTAC	6 cut(s)	70, 319, 456, 697, 739, 775
DdeI	CTNAG	8 cut(s)	15, 114, 207, 315, 516, 595, 771, 891
DpnI	GATC	6 cut(s)	32, 80, 109, 272, 621, 819
DpnII	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
EaeI	YGGCCR	1 cut(s)	93
EagI	CGGCCG	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	903, 951
EarI	CTCTTC	2 cut(s)	903, 951
EclXI	CGGCCG	1 cut(s)	93
Eco130I	CCWWGG	3 cut(s)	666, 678, 750
Eco31I	GGTCTC	1 cut(s)	398
Eco52I	CGGCCG	1 cut(s)	93
Eco57I	CTGAAG	5 cut(s)	104, 236, 586, 648, 825
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	379, 420
EcoT14I	CCWWGG	3 cut(s)	666, 678, 750
ErhI	CCWWGG	3 cut(s)	666, 678, 750
FaeI	CATG	1 cut(s)	670
FalI	AAGNNNNNCTT	6 cut(s)	621, 653, 734, 766, 794, 826
FatI	CATG	1 cut(s)	666
FauNDI	CATATG	2 cut(s)	559, 723
Fnu4HI	GCNGC	7 cut(s)	93, 522, 711, 714, 849, 885, 888
FokI	GGATG	2 cut(s)	388, 419
Fsp4HI	GCNGC	7 cut(s)	93, 522, 711, 714, 849, 885, 888
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	7 cut(s)	93, 522, 711, 714, 849, 885, 888
GsaI	CCCAGC	1 cut(s)	884
HaeIII	GGCC	2 cut(s)	95, 550
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	1 cut(s)	670
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	149, 199, 235, 911
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	5 cut(s)	16, 296, 463, 509, 947
Hpy166II	GTNNAC	2 cut(s)	72, 777
Hpy188I	TCNGA	6 cut(s)	107, 123, 131, 208, 517, 916
Hpy188III	TCNNGA	3 cut(s)	232, 395, 617
Hpy8I	GTNNAC	2 cut(s)	72, 777
Hpy99I	CGWCG	4 cut(s)	107, 158, 464, 920
HpyAV	CCTTC	5 cut(s)	260, 790, 790, 808, 898
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	102, 261
HpyCH4V	TGCA	3 cut(s)	227, 716, 866
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 55, 490, 530, 845, 857, 884
HpyF3I	CTNAG	8 cut(s)	15, 114, 207, 315, 516, 595, 771, 891
HpySE526I	ACGT	2 cut(s)	102, 261
Hsp92II	CATG	1 cut(s)	670
HspAI	GCGC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	459
Kzo9I	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	6 cut(s)	508, 697, 700, 835, 871, 874
LweI	GCATC	2 cut(s)	552, 853
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	102, 261
MaeIII	GTNAC	3 cut(s)	284, 497, 670
MalI	GATC	6 cut(s)	32, 80, 109, 272, 621, 819
MboI	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	78, 817
MhlI	GDGCHC	2 cut(s)	334, 880
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	2 cut(s)	143, 920
MmeI	TCCRAC	3 cut(s)	85, 400, 939
MnlI	CCTC	9 cut(s)	255, 298, 299, 301, 511, 604, 795, 892, 926
MseI	TTAA	2 cut(s)	429, 447
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	381, 422
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	381, 422
MwoI	GCNNNNNNNGC	7 cut(s)	17, 55, 490, 530, 845, 857, 884
NcoI	CCATGG	1 cut(s)	666
NdeI	CATATG	2 cut(s)	559, 723
NdeII	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
NlaIII	CATG	1 cut(s)	670
NlaIV	GGNNCC	5 cut(s)	331, 357, 457, 819, 877
NmuCI	GTSAC	3 cut(s)	284, 497, 670
PaqCI	CACCTGC	1 cut(s)	857
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 948
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	2 cut(s)	199, 235
PflFI	GACNNNGTC	2 cut(s)	152, 503
PflMI	CCANNNNNTGG	2 cut(s)	82, 640
PkrI	GCNGC	7 cut(s)	94, 523, 712, 715, 850, 886, 889
PleI	GAGTC	2 cut(s)	143, 919
PpsI	GAGTC	2 cut(s)	143, 919
Psp1406I	AACGTT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	379, 420
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	880
PspGI	CCWGG	2 cut(s)	379, 420
PspN4I	GGNNCC	5 cut(s)	331, 357, 457, 819, 877
PstNI	CAGNNNCTG	2 cut(s)	848, 887
PsuI	RGATCY	2 cut(s)	78, 817
PsyI	GACNNNGTC	2 cut(s)	152, 503
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	6 cut(s)	71, 320, 457, 698, 740, 776
RsaNI	GTAC	6 cut(s)	70, 319, 456, 697, 739, 775
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	429, 447
SatI	GCNGC	7 cut(s)	93, 522, 711, 714, 849, 885, 888
Sau3AI	GATC	6 cut(s)	30, 78, 107, 270, 619, 817
SchI	GAGTC	2 cut(s)	143, 920
ScrFI	CCNGG	2 cut(s)	381, 422
SduI	GDGCHC	2 cut(s)	334, 880
SfaNI	GCATC	2 cut(s)	552, 853
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	290, 786
SmoI	CTYRAG	2 cut(s)	290, 786
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	92, 719, 851
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	379, 420
StyI	CCWWGG	3 cut(s)	666, 678, 750
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	2 cut(s)	105, 264
TaqI	TCGA	4 cut(s)	63, 396, 462, 951
TasI	AATT	1 cut(s)	360
TatI	WGTACW	3 cut(s)	69, 318, 774
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	199, 235
Tru1I	TTAA	2 cut(s)	429, 447
Tru9I	TTAA	2 cut(s)	429, 447
TscAI	CASTG	3 cut(s)	229, 394, 775
TseFI	GTSAC	3 cut(s)	284, 497, 670
TseI	GCWGC	6 cut(s)	521, 710, 713, 848, 884, 887
Tsp45I	GTSAC	3 cut(s)	284, 497, 670
TspDTI	ATGAA	2 cut(s)	197, 718
TspGWI	ACGGA	2 cut(s)	142, 181
TspRI	CASTG	3 cut(s)	229, 394, 775
Tth111I	GACNNNGTC	2 cut(s)	152, 503
Van91I	CCANNNNNTGG	2 cut(s)	82, 640
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.