FvH4_7g24570

Ribosomal protein P0 is the functional equivalent of E.coli protein L10

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
18956081 .. 18958616
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24570.t1

Sequence Viewer

Length: 966 bp
ATGGGCAAGCTATCCAAGGCCGAGAAGAAGATCAACTACGACGCCAAGCTCTGCAGTCTCTTGGAAGACTATGGCCAGGTCCTCATCGTCGCCGCCGATAACGTGGGCTCCACTCAGCTGCAGAACATCCGCAAAGGTCTACGTGGCGACTCGACTGTTCTCATGGGAAAGAACACCATGATGAAGAGGAGTATCAAGATCCATGCCGCCAAGACCGGTAACGATGCTTACCTCAACCTCGTCCCCCTCCTTGTGGGTAATGTTGGATTGATCTTCACCAAGGGAGATTTGAAGGAAGTCAGTGAGGAGGTGGCCAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCCATTGATGTCGTTGTTCCTCCTGGCAACACCGGTCTCGACCCATCCCAGACCTCTTTCTTCCAGGTCTTGAACATCCCCACCAAGATTAACAAGGGTACTGTGGAAATCATTACACCTGTTGAACTTATCAAGAAGGGTGACAAGGTTGGATCTTCTGAGGCTGCCCTTCTTGCCAAGCTCGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGACAATGGATCTGTCTTCAGCCCAGAGGTGCTTGATCTTACTGAGGATGATCTCATGATTAAGTTCGCTTCTGGTGTCTCCAATGTCACAGCATTGGCATTGGCCATTTCCTACCCGACAATTGCGGCTGCACCACACATGTTCCTAAATGCCTACAAGAATGTGCTAGCAATTGCTGTGGCAACTGAGTATTCATTCCCTCAAGCTGACAAGGTCAAGGAGTATCTGGAGGATCCCTCCAAGTTTGCTGTTGCTGTGGCCGCTCCTGCTGCAGCTGCCGGTGGCGCTGCTGCCCCTGCTGAAGCTGCCAAGGAGGAAGCAAAGAAGGAAGAGCCGGCTGAGGAGTCCGACGATGATATGGGATTTAGCTTATTTGATTAG

Protein Analysis

322

Amino Acids

34.0

Weight (kDa)

5.22

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 6 - 107 1.7e-17 Ribosomal protein L10
RL10P_insert PF17777 113 - 182 5.4e-22 Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s PF00428 233 - 320 2e-23 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 848
AccI GTMKAC 1 cut(s) 139
AciI CCGC 5 cut(s) 93, 130, 207, 710, 846
AclWI GGATC 6 cut(s) 193, 517, 551, 601, 812, 825
AcoI YGGCCR 4 cut(s) 73, 312, 687, 843
AcuI CTGAAG 2 cut(s) 586, 906
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 320, 457
AfiI CCNNNNNNNGG 2 cut(s) 253, 540
AflIII ACRYGT 1 cut(s) 723
AgeI ACCGGT 2 cut(s) 215, 389
AgsI TTSAA 3 cut(s) 292, 430, 482
AjnI CCWGG 3 cut(s) 75, 379, 420
AluBI AGCT 9 cut(s) 10, 49, 118, 332, 538, 791, 860, 890, 954
AluI AGCT 9 cut(s) 10, 49, 118, 332, 538, 791, 860, 890, 954
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 62, 398, 667
AlwI GGATC 6 cut(s) 193, 517, 551, 601, 812, 825
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 6 cut(s) 18, 73, 312, 548, 687, 843
ApeKI GCWGC 9 cut(s) 118, 521, 713, 854, 857, 860, 872, 875, 890
AsiGI ACCGGT 2 cut(s) 215, 389
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 268, 509
AsuNHI GCTAGC 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 79
BalI TGGCCA 3 cut(s) 75, 314, 689
BamHI GGATCC 1 cut(s) 817
BanII GRGCYC 2 cut(s) 110, 334
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BauI CACGAG 1 cut(s) 339
BbsI GAAGAC 2 cut(s) 72, 592
Bbv12I GWGCWC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 924
BbvI GCAGC 9 cut(s) 105, 508, 700, 841, 847, 859, 862, 869, 877
BccI CCATC 2 cut(s) 409, 571
BciT130I CCWGG 3 cut(s) 77, 381, 422
BcoDI GTCTC 3 cut(s) 62, 398, 667
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 3 cut(s) 52, 119, 855
BfoI RGCGCY 1 cut(s) 873
Bme1390I CCNGG 3 cut(s) 77, 381, 422
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 109, 819
BmrFI CCNGG 3 cut(s) 77, 381, 422
BmsI GCATC 1 cut(s) 214
BmtI GCTAGC 1 cut(s) 755
BpiI GAAGAC 2 cut(s) 72, 592
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BpmI CTGGAG 1 cut(s) 833
Bpu10I CCTNAGC 1 cut(s) 924
BpuEI CTTGAG 1 cut(s) 771
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 15, 279, 894
BsaWI WCCGGW 2 cut(s) 215, 389
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 540
Bse118I RCCGGY 4 cut(s) 215, 389, 863, 919
BseBI CCWGG 3 cut(s) 77, 381, 422
BseDI CCNNGG 3 cut(s) 15, 279, 894
BseGI GGATG 4 cut(s) 126, 401, 432, 637
BseLI CCNNNNNNNGG 2 cut(s) 253, 540
BseMII CTCAG 5 cut(s) 128, 507, 618, 762, 915
BseRI GAGGAG 3 cut(s) 202, 320, 941
BseXI GCAGC 9 cut(s) 105, 508, 700, 841, 847, 859, 862, 869, 877
BsgI GTGCAG 1 cut(s) 699
BshFI GGCC 6 cut(s) 20, 75, 314, 550, 689, 845
BshTI ACCGGT 2 cut(s) 215, 389
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 4 cut(s) 216, 390, 864, 920
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 253, 540
BsmAI GTCTC 3 cut(s) 62, 398, 667
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 6 cut(s) 20, 75, 314, 550, 689, 845
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 110, 334
Bsp143I GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
BspACI CCGC 5 cut(s) 93, 130, 207, 710, 846
BspANI GGCC 6 cut(s) 20, 75, 314, 550, 689, 845
BspCNI CTCAG 5 cut(s) 127, 508, 619, 763, 916
BspHI TCATGA 1 cut(s) 639
BspLI GGNNCC 2 cut(s) 109, 819
BspMAI CTGCAG 3 cut(s) 56, 123, 859
BspOI GCTAGC 1 cut(s) 755
BspPI GGATC 6 cut(s) 193, 517, 551, 601, 812, 825
BspQI GCTCTTC 1 cut(s) 909
BspTNI GGTCTC 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 848
BsrFI RCCGGY 4 cut(s) 215, 389, 863, 919
BssAI RCCGGY 4 cut(s) 215, 389, 863, 919
BssECI CCNNGG 3 cut(s) 15, 279, 894
BssMI GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 3 cut(s) 15, 279, 894
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 3 cut(s) 77, 381, 422
Bst4CI ACNGT 2 cut(s) 157, 460
Bst6I CTCTTC 2 cut(s) 179, 909
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 8, 753, 921
BstDEI CTNAG 5 cut(s) 114, 516, 627, 771, 924
BstF5I GGATG 4 cut(s) 126, 401, 432, 637
BstH2I RGCGCY 1 cut(s) 873
BstHHI GCGC 1 cut(s) 872
BstKTI GATC 9 cut(s) 33, 201, 273, 512, 546, 596, 622, 637, 820
BstMAI GTCTC 3 cut(s) 62, 398, 667
BstMBI GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
BstMWI GCNNNNNNNGC 8 cut(s) 530, 845, 851, 854, 860, 869, 881, 890
BstNI CCWGG 3 cut(s) 77, 381, 422
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 3 cut(s) 75, 379, 420
BstSFI CTRYAG 3 cut(s) 52, 119, 855
BstV1I GCAGC 9 cut(s) 105, 508, 700, 841, 847, 859, 862, 869, 877
BstV2I GAAGAC 2 cut(s) 72, 592
BstX2I RGATCY 4 cut(s) 198, 509, 593, 817
BstYI RGATCY 4 cut(s) 198, 509, 593, 817
BsuRI GGCC 6 cut(s) 20, 75, 314, 550, 689, 845
BtsCI GGATG 4 cut(s) 126, 401, 432, 637
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 8, 753, 921
CciI TCATGA 1 cut(s) 639
CfoI GCGC 1 cut(s) 872
Cfr10I RCCGGY 4 cut(s) 215, 389, 863, 919
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 319, 456
CspAI ACCGGT 2 cut(s) 215, 389
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 5 cut(s) 163, 178, 203, 640, 724
CviQI GTAC 2 cut(s) 319, 456
DdeI CTNAG 5 cut(s) 114, 516, 627, 771, 924
DpnI GATC 9 cut(s) 32, 200, 272, 511, 545, 595, 621, 636, 819
DpnII GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
EaeI YGGCCR 4 cut(s) 73, 312, 687, 843
Eam1104I CTCTTC 2 cut(s) 179, 909
EarI CTCTTC 2 cut(s) 179, 909
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 3 cut(s) 15, 279, 894
Eco24I GRGCYC 2 cut(s) 110, 334
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 586, 906
Eco88I CYCGRG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 3 cut(s) 75, 379, 420
EcoT14I CCWWGG 3 cut(s) 15, 279, 894
EcoT38I GRGCYC 2 cut(s) 110, 334
ErhI CCWWGG 3 cut(s) 15, 279, 894
FaeI CATG 5 cut(s) 166, 181, 206, 643, 727
FaiI YATR 9 cut(s) 72, 164, 179, 204, 561, 585, 641, 725, 944
FaqI GGGAC 1 cut(s) 227
FatI CATG 5 cut(s) 162, 177, 202, 639, 723
FblI GTMKAC 1 cut(s) 139
FokI GGATG 4 cut(s) 113, 388, 419, 644
FriOI GRGCYC 2 cut(s) 110, 334
FspBI CTAG 1 cut(s) 752
GlaI GCGC 1 cut(s) 871
GsuI CTGGAG 1 cut(s) 833
HaeII RGCGCY 1 cut(s) 873
HaeIII GGCC 6 cut(s) 20, 75, 314, 550, 689, 845
HapII CCGG 4 cut(s) 216, 390, 864, 920
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 872
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 5 cut(s) 166, 181, 206, 643, 727
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HinfI GANTC 2 cut(s) 149, 929
HpaII CCGG 4 cut(s) 216, 390, 864, 920
HphI GGTGA 2 cut(s) 268, 509
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 517, 934
Hpy188III TCNNGA 8 cut(s) 196, 395, 427, 490, 541, 574, 640, 812
Hpy8I GTNNAC 1 cut(s) 140
Hpy99I CGWCG 3 cut(s) 44, 92, 938
HpyAV CCTTC 4 cut(s) 286, 487, 536, 904
HpyCH4III ACNGT 2 cut(s) 157, 460
HpyCH4IV ACGT 2 cut(s) 102, 142
HpyCH4V TGCA 4 cut(s) 54, 121, 716, 857
HpyF10VI GCNNNNNNNGC 8 cut(s) 530, 845, 851, 854, 860, 869, 881, 890
HpyF3I CTNAG 5 cut(s) 114, 516, 627, 771, 924
HpySE526I ACGT 2 cut(s) 102, 142
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 5 cut(s) 166, 181, 206, 643, 727
HspAI GCGC 1 cut(s) 870
KroI GCCGGC 1 cut(s) 919
KroNI GCCGGC 1 cut(s) 921
Kzo9I GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 5 cut(s) 113, 329, 337, 361, 853
Lsp1109I GCAGC 9 cut(s) 105, 508, 700, 841, 847, 859, 862, 869, 877
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 752
MaeII ACGT 2 cut(s) 102, 142
MaeIII GTNAC 3 cut(s) 218, 497, 670
MalI GATC 9 cut(s) 32, 200, 272, 511, 545, 595, 621, 636, 819
MbiI CCGCTC 1 cut(s) 848
MboI GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
MboII GAAGA 9 cut(s) 37, 40, 77, 196, 265, 409, 504, 592, 926
MfeI CAATTG 2 cut(s) 705, 756
MflI RGATCY 4 cut(s) 198, 509, 593, 817
MhlI GDGCHC 2 cut(s) 110, 334
MlsI TGGCCA 3 cut(s) 75, 314, 689
MluCI AATT 2 cut(s) 705, 756
MluNI TGGCCA 3 cut(s) 75, 314, 689
MlyI GAGTC 2 cut(s) 143, 938
MmeI TCCRAC 4 cut(s) 244, 307, 487, 957
Mox20I TGGCCA 3 cut(s) 75, 314, 689
MroNI GCCGGC 1 cut(s) 919
MscI TGGCCA 3 cut(s) 75, 314, 689
MseI TTAA 2 cut(s) 447, 645
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 3 cut(s) 75, 314, 689
MspA1I CMGCKG 2 cut(s) 118, 860
MspI CCGG 4 cut(s) 216, 390, 864, 920
MspR9I CCNGG 3 cut(s) 77, 381, 422
MunI CAATTG 2 cut(s) 705, 756
MvaI CCWGG 3 cut(s) 77, 381, 422
MwoI GCNNNNNNNGC 8 cut(s) 530, 845, 851, 854, 860, 869, 881, 890
NaeI GCCGGC 1 cut(s) 921
NdeII GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
NgoMIV GCCGGC 1 cut(s) 919
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 5 cut(s) 166, 181, 206, 643, 727
NlaIV GGNNCC 2 cut(s) 109, 819
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 497, 670
NspI RCATGY 1 cut(s) 727
PagI TCATGA 1 cut(s) 639
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 909
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 921
PflFI GACNNNGTC 1 cut(s) 797
PinAI ACCGGT 2 cut(s) 215, 389
PleI GAGTC 2 cut(s) 143, 937
PpsI GAGTC 2 cut(s) 143, 937
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 79
PscI ACATGT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 75, 379, 420
PspGI CCWGG 3 cut(s) 75, 379, 420
PspN4I GGNNCC 2 cut(s) 109, 819
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PstI CTGCAG 3 cut(s) 56, 123, 859
PsuI RGATCY 4 cut(s) 198, 509, 593, 817
PsyI GACNNNGTC 1 cut(s) 797
PvuII CAGCTG 2 cut(s) 118, 860
RsaI GTAC 2 cut(s) 320, 457
RsaNI GTAC 2 cut(s) 319, 456
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 447, 645
Sau3AI GATC 9 cut(s) 30, 198, 270, 509, 543, 593, 619, 634, 817
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 2 cut(s) 143, 938
ScrFI CCNGG 3 cut(s) 77, 381, 422
SduI GDGCHC 2 cut(s) 110, 334
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 3 cut(s) 52, 119, 855
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 2 cut(s) 705, 756
SsiI CCGC 5 cut(s) 93, 130, 207, 710, 846
SspMI CTAG 1 cut(s) 752
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 3 cut(s) 75, 379, 420
StyI CCWWGG 3 cut(s) 15, 279, 894
TaaI ACNGT 2 cut(s) 157, 460
TaiI ACGT 2 cut(s) 105, 145
TaqI TCGA 2 cut(s) 152, 396
TasI AATT 2 cut(s) 705, 756
TatI WGTACW 1 cut(s) 318
TauI GCSGC 4 cut(s) 95, 209, 713, 848
Tru1I TTAA 2 cut(s) 447, 645
Tru9I TTAA 2 cut(s) 447, 645
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 497, 670
TseI GCWGC 9 cut(s) 118, 521, 713, 854, 857, 860, 872, 875, 890
Tsp45I GTSAC 2 cut(s) 497, 670
TspDTI ATGAA 2 cut(s) 197, 768
TspRI CASTG 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 79
XceI RCATGY 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.