Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

29299273 .. 29302026

Gene Structure 2754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1215800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCCCTAAACCCTCCAAGGCCGACAAGAAGATCGCCTACGATTCCAAGCTCTGCTCCCTCCTCGACGAGTATGGCCAGGTCCTCATTGTCGCCGCCGACAACGTCGGCTCCAAGCAGCTCCAGAACATCCGCAAGGGGCTGCGCGGAGATTCCGTCGTTCTGATGGGGAAGAACACGATGATGAAAAGGTCCGTCAGGATCCATGCGGAGAAGACGGGCAACAGTGCCTACCTCAACCTCGTCCCCCTCCTTGTGGGCAACGTCGGTCTAATTTTCACAAAGGGTGATTTGAAGGAAGTCAGCGAAGAGGTTGGAAAGTACAAGGTTGGAGCCCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTGGTTCCTCCTGGTAACACTGGTCTTGACCCATCTCAGACCTCTTTCTTCCAGGTGCTCAACATCCCCACCAAGATTAACAAGGGTACTGTTGAAATCATTACTCCTGTTGAACTTATCAAGAAGGGAGATAAGGTTGGCTCTTCTGAGGCTGCCCTCCTTGCCAAGCTTGGAATCCGGCCATTCTCATATGGTCTTGTTGTCCAGATGGTGTATGACAACGGTTCCGTCTTCAGCCCAGAGGTGCTTGATCTGACTGAGGATGATCTCATGGAGAAGTTTGCTTCTGGTGTCTCGATGGTCACTTCATTGGCGTTGGCCATCTCATACCCCACCCTGGCAGCTGCACCACACATGTTCCTCAATGCCTACAAGAACGTGTTGGCAGTTTCTATTGCCACCGAATATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAAGTTTGCAGTTGCTGCAGCCCCTGTTGCTGCTGCTGCTTCAGGAGGTGCTCCAGCAGCAGCTAAGGAGGAAGAGAAGAAGCCCGAGCCCGAAGAGGAATCCGACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

322

Amino Acids

34.21

Weight (kDa)

5.36

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	8 - 108	1.6e-16	Ribosomal protein L10
RL10P_insert	PF17777	114 - 183	5.4e-22	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	234 - 319	3.4e-23	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	96, 133, 147, 209
AclWI	GGATC	2 cut(s)	196, 209
AcoI	YGGCCR	3 cut(s)	76, 551, 690
AcuI	CTGAAG	2 cut(s)	589, 852
AfaI	GTAC	2 cut(s)	323, 460
AfiI	CCNNNNNNNGG	2 cut(s)	256, 709
AflIII	ACRYGT	2 cut(s)	726, 750
AgsI	TTSAA	3 cut(s)	295, 467, 485
AjnI	CCWGG	4 cut(s)	78, 382, 423, 708
AluBI	AGCT	5 cut(s)	52, 121, 541, 716, 890
AluI	AGCT	5 cut(s)	52, 121, 541, 716, 890
Alw21I	GWGCWC	2 cut(s)	432, 880
Alw26I	GTCTC	1 cut(s)	670
AlwI	GGATC	2 cut(s)	196, 209
AlwNI	CAGNNNCTG	2 cut(s)	842, 851
Ama87I	CYCGRG	1 cut(s)	911
AoxI	GGCC	5 cut(s)	3, 21, 76, 551, 690
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	4 cut(s)	4, 82, 192, 820
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	3 cut(s)	82, 192, 820
BalI	TGGCCA	2 cut(s)	78, 692
BamHI	GGATCC	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	337, 918
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	221, 595
Bbv12I	GWGCWC	2 cut(s)	432, 880
BccI	CCATC	5 cut(s)	160, 412, 574, 664, 701
BciT130I	CCWGG	4 cut(s)	80, 384, 425, 710
BcoDI	GTCTC	1 cut(s)	670
BfmI	CTRYAG	1 cut(s)	843
Bme1390I	CCNGG	4 cut(s)	80, 384, 425, 710
Bme18I	GGWCC	3 cut(s)	82, 192, 820
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	4 cut(s)	4, 82, 192, 820
BmiI	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
BmrFI	CCNGG	4 cut(s)	80, 384, 425, 710
BpiI	GAAGAC	2 cut(s)	221, 595
BpmI	CTGGAG	2 cut(s)	107, 864
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	800
BsaJI	CCNNGG	2 cut(s)	18, 708
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 141, 171, 492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 709
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	4 cut(s)	80, 384, 425, 710
BseDI	CCNNGG	2 cut(s)	18, 708
BseGI	GGATG	3 cut(s)	129, 435, 640
BseLI	CCNNNNNNNGG	2 cut(s)	256, 709
BseMII	CTCAG	3 cut(s)	422, 510, 621
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BsiHKAI	GWGCWC	2 cut(s)	432, 880
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	256, 709
BsmAI	GTCTC	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	4 cut(s)	337, 432, 880, 918
Bsp143I	GATC	4 cut(s)	33, 201, 622, 637
BspACI	CCGC	4 cut(s)	96, 133, 147, 209
BspANI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BspCNI	CTCAG	3 cut(s)	421, 511, 622
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	2 cut(s)	196, 209
BspQI	GCTCTTC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	18, 708
BssMI	GATC	4 cut(s)	33, 201, 622, 637
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	4 cut(s)	80, 384, 425, 710
Bst4CI	ACNGT	3 cut(s)	227, 463, 596
Bst6I	CTCTTC	4 cut(s)	303, 520, 894, 915
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstDEI	CTNAG	4 cut(s)	408, 519, 630, 891
BstF5I	GGATG	3 cut(s)	129, 435, 640
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	4 cut(s)	36, 204, 625, 640
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	4 cut(s)	33, 201, 622, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
BstNI	CCWGG	4 cut(s)	80, 384, 425, 710
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	4 cut(s)	78, 382, 423, 708
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	1 cut(s)	147
BstV2I	GAAGAC	2 cut(s)	221, 595
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BtsCI	GGATG	3 cut(s)	129, 435, 640
BtsIMutI	CAGTG	2 cut(s)	232, 390
CaiI	CAGNNNCTG	2 cut(s)	842, 851
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	4 cut(s)	4, 82, 192, 820
Csp6I	GTAC	2 cut(s)	322, 459
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	206, 643, 727
CviQI	GTAC	2 cut(s)	322, 459
DdeI	CTNAG	4 cut(s)	408, 519, 630, 891
DpnI	GATC	4 cut(s)	35, 203, 624, 639
DpnII	GATC	4 cut(s)	33, 201, 622, 637
EaeI	YGGCCR	3 cut(s)	76, 551, 690
Eam1104I	CTCTTC	4 cut(s)	303, 520, 894, 915
EarI	CTCTTC	4 cut(s)	303, 520, 894, 915
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	337, 918
Eco47I	GGWCC	3 cut(s)	82, 192, 820
Eco57I	CTGAAG	2 cut(s)	589, 852
Eco88I	CYCGRG	1 cut(s)	911
EcoO109I	RGGNCCY	2 cut(s)	82, 820
EcoRII	CCWGG	4 cut(s)	78, 382, 423, 708
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	337, 918
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	209, 646, 730
FaiI	YATR	8 cut(s)	75, 207, 562, 564, 588, 644, 700, 728
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	205, 642, 726
FauNDI	CATATG	1 cut(s)	562
FokI	GGATG	3 cut(s)	116, 422, 647
FriOI	GRGCYC	2 cut(s)	337, 918
GlaI	GCGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	107, 864
HaeIII	GGCC	5 cut(s)	5, 23, 78, 553, 692
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	209, 646, 730
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	44, 152, 546, 926
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	165, 411, 520, 627, 931
Hpy188III	TCNNGA	7 cut(s)	124, 199, 398, 493, 577, 667, 870
Hpy99I	CGWCG	5 cut(s)	71, 110, 161, 269, 935
HpyAV	CCTTC	4 cut(s)	289, 490, 793, 793
HpyCH4III	ACNGT	3 cut(s)	227, 463, 596
HpyCH4IV	ACGT	3 cut(s)	105, 264, 750
HpyCH4V	TGCA	3 cut(s)	719, 836, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
HpyF3I	CTNAG	4 cut(s)	408, 519, 630, 891
HpySE526I	ACGT	3 cut(s)	105, 264, 750
Hsp92II	CATG	3 cut(s)	209, 646, 730
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	33, 201, 622, 637
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	6 cut(s)	62, 116, 126, 332, 364, 883
MaeII	ACGT	3 cut(s)	105, 264, 750
MaeIII	GTNAC	2 cut(s)	386, 673
MalI	GATC	4 cut(s)	35, 203, 624, 639
MboI	GATC	4 cut(s)	33, 201, 622, 637
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	4 cut(s)	337, 432, 880, 918
MlsI	TGGCCA	2 cut(s)	78, 692
MluCI	AATT	2 cut(s)	273, 363
MluNI	TGGCCA	2 cut(s)	78, 692
MmeI	TCCRAC	3 cut(s)	295, 310, 954
Mox20I	TGGCCA	2 cut(s)	78, 692
MscI	TGGCCA	2 cut(s)	78, 692
MseI	TTAA	2 cut(s)	450, 964
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	78, 692
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	4 cut(s)	80, 384, 425, 710
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	4 cut(s)	80, 384, 425, 710
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	4 cut(s)	33, 201, 622, 637
NlaIII	CATG	3 cut(s)	209, 646, 730
NlaIV	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	520
PfeI	GAWTC	4 cut(s)	44, 152, 546, 926
PflFI	GACNNNGTC	1 cut(s)	104
PpuMI	RGGWCCY	2 cut(s)	82, 820
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	2 cut(s)	82, 820
Psp6I	CCWGG	4 cut(s)	78, 382, 423, 708
PspGI	CCWGG	4 cut(s)	78, 382, 423, 708
PspN4I	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
PspPI	GGNCC	4 cut(s)	4, 82, 192, 820
PspPPI	RGGWCCY	2 cut(s)	82, 820
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	2 cut(s)	842, 851
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	323, 460
RsaNI	GTAC	2 cut(s)	322, 459
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	450, 964
Sau3AI	GATC	4 cut(s)	33, 201, 622, 637
Sau96I	GGNCC	4 cut(s)	4, 82, 192, 820
ScrFI	CCNGG	4 cut(s)	80, 384, 425, 710
SduI	GDGCHC	4 cut(s)	337, 432, 880, 918
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	3 cut(s)	82, 192, 820
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	2 cut(s)	273, 363
SsiI	CCGC	4 cut(s)	96, 133, 147, 209
SspI	AATATT	1 cut(s)	779
StyD4I	CCNGG	4 cut(s)	78, 382, 423, 708
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	227, 463, 596
TaiI	ACGT	3 cut(s)	108, 267, 753
TaqI	TCGA	2 cut(s)	66, 668
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	273, 363
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	4 cut(s)	44, 152, 546, 926
Tru1I	TTAA	2 cut(s)	450, 964
Tru9I	TTAA	2 cut(s)	450, 964
TscAI	CASTG	2 cut(s)	232, 397
TseFI	GTSAC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	200, 669
TspGWI	ACGGA	3 cut(s)	145, 184, 589
TspRI	CASTG	2 cut(s)	232, 397
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	3 cut(s)	82, 192, 820
XceI	RCATGY	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.