Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

25077240 .. 25079599

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCAAGCTATCGAAGGCCGATAAGAAGACCAACTACGACGCCAAGCTCTGCAAGCTCTTGGACGACTATGGCCAGGTTCTCGTTGTCGCCGCCGATAACGTGGGCTCCACTCAGCTCCAGAACATCCGCAAAGGTCTCCGTGGGGACTCCACAGTCCTCATGGGGAAGAATACCATGATGAAGAGAAGCATAAAGATTCATGCTGCCAGGACCGGTAACGATGCTTACCTCAGCCTCGTTCCCCTCCTTGTGGGTAATGTTGGTTTGATCTTCACCAAGGGTGATTTGAAGGAAGTCAGAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTGGTTGCTCCCATTGATGTCGTTGTTCCTCCTGGTAACACCGGTCTCGACCCATCCCAGACCTCTTTCTTCCAGGTCCTTAACATCCCTACCAAGATTAACAAGGGTACTGTGGAAATCATTATGCCTGTTGAACTTATCAAGAAGGGTGACAAGGTTGGATCTTCTGAGGCTGCCCTTCTTGCCAAGCTTGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGACAATGGATCTGTCTTCAGCCCAGAGGTGCTTGATCTTACTGAGGATGATCTCATGATTAAGTTTGCTTCTGGTGTCTCCAATGTCACAGCATTGGCAATGGCCGTTTCCTACCCGACAATTGCGGCTGCACCACACATGTTCCTCAATGCCTACAAGAATGTGCTGGCAATTGCTGTGGCTACTGAGTATTCCTTCCCCCAAGCTGACAAGGTCAAGGAGTATCTTGAGGATCCATCCAAATTTGCGGTTGCCGTGGCTGCTCCTGCTGCAGCTGCTAGTGGTACTGCTGGCCAGGCTGCAGCTGCTGAGGAAGCAAAGAAGGAAGAGCCTGCTGAAGAGTCGGATGATGATATTGGATACGGTAGCTTGTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

322

Amino Acids

34.03

Weight (kDa)

5.45

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	7 - 107	3.7e-17	Ribosomal protein L10
RL10P_insert	PF17777	113 - 182	1.1e-21	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	233 - 320	5.4e-21	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AciI	CCGC	4 cut(s)	93, 130, 710, 833
AclWI	GGATC	5 cut(s)	517, 551, 601, 812, 825
AcoI	YGGCCR	3 cut(s)	73, 687, 877
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	2 cut(s)	586, 942
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	320, 457, 871
AfiI	CCNNNNNNNGG	2 cut(s)	253, 540
AflIII	ACRYGT	1 cut(s)	723
AgeI	ACCGGT	2 cut(s)	215, 389
AgsI	TTSAA	2 cut(s)	292, 482
AjnI	CCWGG	5 cut(s)	75, 209, 379, 420, 879
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	143, 398, 667
AlwI	GGATC	5 cut(s)	517, 551, 601, 812, 825
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	5 cut(s)	18, 73, 548, 687, 877
ApoI	RAATTY	1 cut(s)	827
AsiGI	ACCGGT	2 cut(s)	215, 389
AspS9I	GGNCC	2 cut(s)	213, 424
AsuHPI	GGTGA	3 cut(s)	268, 296, 509
AvaII	GGWCC	2 cut(s)	213, 424
BalI	TGGCCA	2 cut(s)	75, 879
BamHI	GGATCC	1 cut(s)	817
BanII	GRGCYC	2 cut(s)	110, 334
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	35, 592
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	2 cut(s)	233, 894
BccI	CCATC	3 cut(s)	409, 571, 829
BceAI	ACGGC	2 cut(s)	674, 824
BciT130I	CCWGG	5 cut(s)	77, 211, 381, 422, 881
BciVI	GTATCC	1 cut(s)	938
BcoDI	GTCTC	3 cut(s)	143, 398, 667
BfaI	CTAG	2 cut(s)	864, 964
BfmI	CTRYAG	2 cut(s)	855, 885
BfuI	GTATCC	1 cut(s)	938
Bme1390I	CCNGG	5 cut(s)	77, 211, 381, 422, 881
Bme18I	GGWCC	2 cut(s)	213, 424
BmgT120I	GGNCC	2 cut(s)	213, 424
BmiI	GGNNCC	2 cut(s)	109, 819
BmrFI	CCNGG	5 cut(s)	77, 211, 381, 422, 881
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	35, 592
BpmI	CTGGAG	1 cut(s)	104
Bpu10I	CCTNAGC	2 cut(s)	233, 894
BpuEI	CTTGAG	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	143, 398
BsaJI	CCNNGG	3 cut(s)	142, 279, 840
BsaWI	WCCGGW	2 cut(s)	215, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 540
Bse118I	RCCGGY	2 cut(s)	215, 389
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	5 cut(s)	77, 211, 381, 422, 881
BseDI	CCNNGG	3 cut(s)	142, 279, 840
BseGI	GGATG	6 cut(s)	126, 401, 432, 637, 821, 937
BseLI	CCNNNNNNNGG	2 cut(s)	253, 540
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	6 cut(s)	128, 247, 507, 618, 762, 885
BseRI	GAGGAG	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	5 cut(s)	20, 75, 550, 689, 879
BshTI	ACCGGT	2 cut(s)	215, 389
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	216, 390
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	253, 540
BsmAI	GTCTC	3 cut(s)	143, 398, 667
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	5 cut(s)	20, 75, 550, 689, 879
Bso31I	GGTCTC	2 cut(s)	143, 398
Bsp1286I	GDGCHC	2 cut(s)	110, 334
Bsp143I	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
BspACI	CCGC	4 cut(s)	93, 130, 710, 833
BspANI	GGCC	5 cut(s)	20, 75, 550, 689, 879
BspCNI	CTCAG	6 cut(s)	127, 246, 508, 619, 763, 886
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	109, 819
BspMAI	CTGCAG	2 cut(s)	859, 889
BspPI	GGATC	5 cut(s)	517, 551, 601, 812, 825
BspQI	GCTCTTC	1 cut(s)	906
BspTNI	GGTCTC	2 cut(s)	143, 398
BsrDI	GCAATG	1 cut(s)	690
BsrFI	RCCGGY	2 cut(s)	215, 389
BssAI	RCCGGY	2 cut(s)	215, 389
BssECI	CCNNGG	3 cut(s)	142, 279, 840
BssMI	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	5 cut(s)	77, 211, 381, 422, 881
Bst4CI	ACNGT	3 cut(s)	157, 460, 950
Bst6I	CTCTTC	3 cut(s)	179, 906, 918
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	5 cut(s)	8, 56, 753, 877, 918
BstDEI	CTNAG	7 cut(s)	114, 233, 315, 516, 627, 771, 894
BstDSI	CCRYGG	2 cut(s)	142, 840
BstF5I	GGATG	6 cut(s)	126, 401, 432, 637, 821, 937
BstKTI	GATC	7 cut(s)	273, 512, 546, 596, 622, 637, 820
BstMAI	GTCTC	3 cut(s)	143, 398, 667
BstMBI	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
BstMWI	GCNNNNNNNGC	9 cut(s)	55, 530, 845, 851, 854, 860, 881, 890, 899
BstNI	CCWGG	5 cut(s)	77, 211, 381, 422, 881
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	5 cut(s)	75, 209, 379, 420, 879
BstSFI	CTRYAG	2 cut(s)	855, 885
BstV2I	GAAGAC	2 cut(s)	35, 592
BstX2I	RGATCY	3 cut(s)	509, 593, 817
BstYI	RGATCY	3 cut(s)	509, 593, 817
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	5 cut(s)	20, 75, 550, 689, 879
BtgI	CCRYGG	2 cut(s)	142, 840
BtsCI	GGATG	6 cut(s)	126, 401, 432, 637, 821, 937
Cac8I	GCNNGC	5 cut(s)	8, 56, 753, 877, 918
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	639
Cfr10I	RCCGGY	2 cut(s)	215, 389
Cfr13I	GGNCC	2 cut(s)	213, 424
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	319, 456, 870
CspAI	ACCGGT	2 cut(s)	215, 389
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	5 cut(s)	163, 178, 203, 640, 724
CviQI	GTAC	3 cut(s)	319, 456, 870
DdeI	CTNAG	7 cut(s)	114, 233, 315, 516, 627, 771, 894
DpnI	GATC	7 cut(s)	272, 511, 545, 595, 621, 636, 819
DpnII	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	3 cut(s)	73, 687, 877
Eam1104I	CTCTTC	3 cut(s)	179, 906, 918
EarI	CTCTTC	3 cut(s)	179, 906, 918
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	2 cut(s)	110, 334
Eco31I	GGTCTC	2 cut(s)	143, 398
Eco47I	GGWCC	2 cut(s)	213, 424
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	586, 942
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	5 cut(s)	75, 209, 379, 420, 879
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	110, 334
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	166, 181, 206, 643, 727
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	162, 177, 202, 639, 723
FokI	GGATG	6 cut(s)	113, 388, 419, 644, 808, 944
FriOI	GRGCYC	2 cut(s)	110, 334
FspBI	CTAG	2 cut(s)	864, 964
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	5 cut(s)	20, 75, 550, 689, 879
HapII	CCGG	2 cut(s)	216, 390
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	166, 181, 206, 643, 727
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	149, 199, 926
HpaII	CCGG	2 cut(s)	216, 390
HphI	GGTGA	3 cut(s)	268, 296, 509
Hpy188I	TCNGA	3 cut(s)	302, 517, 931
Hpy188III	TCNNGA	6 cut(s)	121, 395, 490, 574, 640, 812
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	6 cut(s)	10, 286, 487, 536, 790, 901
HpyCH4III	ACNGT	3 cut(s)	157, 460, 950
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	54, 716, 857, 887
HpyF10VI	GCNNNNNNNGC	9 cut(s)	55, 530, 845, 851, 854, 860, 881, 890, 899
HpyF3I	CTNAG	7 cut(s)	114, 233, 315, 516, 627, 771, 894
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	166, 181, 206, 643, 727
Kzo9I	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	6 cut(s)	113, 123, 329, 337, 361, 853
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	864, 964
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	218, 383, 497, 670
MalI	GATC	7 cut(s)	272, 511, 545, 595, 621, 636, 819
MboI	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
MboII	GAAGA	9 cut(s)	40, 181, 196, 265, 409, 504, 592, 923, 935
MfeI	CAATTG	2 cut(s)	705, 756
MflI	RGATCY	3 cut(s)	509, 593, 817
MhlI	GDGCHC	2 cut(s)	110, 334
MlsI	TGGCCA	2 cut(s)	75, 879
MluCI	AATT	3 cut(s)	705, 756, 827
MluNI	TGGCCA	2 cut(s)	75, 879
MlyI	GAGTC	2 cut(s)	143, 935
MmeI	TCCRAC	3 cut(s)	307, 487, 909
Mox20I	TGGCCA	2 cut(s)	75, 879
MscI	TGGCCA	2 cut(s)	75, 879
MseI	TTAA	3 cut(s)	429, 447, 645
Msp20I	TGGCCA	2 cut(s)	75, 879
MspA1I	CMGCKG	2 cut(s)	860, 890
MspI	CCGG	2 cut(s)	216, 390
MspR9I	CCNGG	5 cut(s)	77, 211, 381, 422, 881
MunI	CAATTG	2 cut(s)	705, 756
MvaI	CCWGG	5 cut(s)	77, 211, 381, 422, 881
MwoI	GCNNNNNNNGC	9 cut(s)	55, 530, 845, 851, 854, 860, 881, 890, 899
NdeII	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
NlaIII	CATG	5 cut(s)	166, 181, 206, 643, 727
NlaIV	GGNNCC	2 cut(s)	109, 819
NmuCI	GTSAC	2 cut(s)	497, 670
NspI	RCATGY	1 cut(s)	727
PagI	TCATGA	1 cut(s)	639
PciI	ACATGT	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	906
PfeI	GAWTC	1 cut(s)	199
PflFI	GACNNNGTC	1 cut(s)	797
PinAI	ACCGGT	2 cut(s)	215, 389
PleI	GAGTC	2 cut(s)	143, 934
PpsI	GAGTC	2 cut(s)	143, 934
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	723
Psp124BI	GAGCTC	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	5 cut(s)	75, 209, 379, 420, 879
PspGI	CCWGG	5 cut(s)	75, 209, 379, 420, 879
PspN4I	GGNNCC	2 cut(s)	109, 819
PspPI	GGNCC	2 cut(s)	213, 424
PspPPI	RGGWCCY	1 cut(s)	424
PstI	CTGCAG	2 cut(s)	859, 889
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	3 cut(s)	509, 593, 817
PsyI	GACNNNGTC	1 cut(s)	797
PvuII	CAGCTG	2 cut(s)	860, 890
RsaI	GTAC	3 cut(s)	320, 457, 871
RsaNI	GTAC	3 cut(s)	319, 456, 870
SacI	GAGCTC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	429, 447, 645
Sau3AI	GATC	7 cut(s)	270, 509, 543, 593, 619, 634, 817
Sau96I	GGNCC	2 cut(s)	213, 424
SchI	GAGTC	2 cut(s)	143, 935
ScrFI	CCNGG	5 cut(s)	77, 211, 381, 422, 881
SduI	GDGCHC	2 cut(s)	110, 334
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	2 cut(s)	855, 885
SinI	GGWCC	2 cut(s)	213, 424
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	3 cut(s)	705, 756, 827
SsiI	CCGC	4 cut(s)	93, 130, 710, 833
SspMI	CTAG	2 cut(s)	864, 964
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	5 cut(s)	75, 209, 379, 420, 879
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	157, 460, 950
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	14, 396
TasI	AATT	3 cut(s)	705, 756, 827
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	95, 713
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	429, 447, 645
Tru9I	TTAA	3 cut(s)	429, 447, 645
TseFI	GTSAC	2 cut(s)	497, 670
Tsp45I	GTSAC	2 cut(s)	497, 670
TspDTI	ATGAA	2 cut(s)	191, 197
TspGWI	ACGGA	1 cut(s)	131
Tth111I	GACNNNGTC	1 cut(s)	797
VpaK11BI	GGWCC	2 cut(s)	213, 424
XapI	RAATTY	1 cut(s)	827
XceI	RCATGY	1 cut(s)	727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XspI	CTAG	2 cut(s)	864, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.