Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Forward (+)

46914972 .. 46917664

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0352000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCATTTTGTCTCTCACTAACCAACTCTCACATTACTCCGCTCATCGCTCCGGTTCGTCCCAAGTACCCACGCGCCGTCGCCGGCGAGTCAACCATGGCGGCCAACTCGCTCCGAGTCGCAGCCGCCCAGTTGACCTCCATCAACGACCTCGCCGCCAACTTCGCCACCTGCTCCCGCCTCGTCAAAGAGGCAGCTGCTAGTGGAGCTAAATTGATTTGCTTCCCTGAAAGCTTCTCCTTTATTGGGGCTAAAGATGGGGATAGTCTCAAAATAGCTGAACCTTTAGAGGGCCCAATAATGAAACAGTACTGCTCTCTTGCAAGGGAATCTGGGATTTGGTTGTCACTAGGAGGGTTTCAGGAAAAGGGGTCTGATGATGAGCATTTGTTTAACACCCATGTTGTGGTTGATGATGCTGGCAACATCAGAAGCACTTACAGAAAGATTCACTTGTTTGATGTGGATACTCCTGGTGGGAGGTCATACAAGGAAAGTATCTTTACAGAAGCAGGGAAGAATGTTGTTGCAGTAGATAGCCCTGTGGGACGTTTGGGTTTGACAGTTTGCTATGACCTGAGATTCCCAGAGATTTACCAGCTGCTCAGGTTCCAACATGAGGCACAGATTCTGTTAGTACCTTCAGCCTTTACCAAAGTAACTGGTCAGGCACATTGGGAGGTTCTTCTTCGTGCTCGTGCAATTGAGACTCAATGTTATGTAATAGCTTCTGCACAAGCTGGAAAGCATAATGATAAAAGAGAAAGCCATGGCGAAACTTTAATTATTGATCCATGGGGAACAGTTGTTGGTCGACTACCTGATACTTTGTCAACCGGGATTACTATAGCTGATATTGATTTCTCATTGATCGATTCAGTGAGAGCAAAGATGCCAATTGCCAAGCATCGGAAACCTGTTGAGTTCTGGAAATCTGCATCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

315

Amino Acids

34.42

Weight (kDa)

7.11

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	39 - 295	1.2e-63	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccBSI	CCGCTC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	1 cut(s)	75
AciI	CCGC	5 cut(s)	41, 101, 126, 156, 178
AclWI	GGATC	1 cut(s)	785
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	68, 311, 639
AfiI	CCNNNNNNNGG	5 cut(s)	246, 290, 406, 619, 909
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	8 cut(s)	197, 209, 234, 278, 601, 728, 740, 851
AluI	AGCT	8 cut(s)	197, 209, 234, 278, 601, 728, 740, 851
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	3 cut(s)	17, 272, 701
AlwI	GGATC	1 cut(s)	785
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	2 cut(s)	102, 292
ApaI	GGGCCC	1 cut(s)	296
ApeKI	GCWGC	4 cut(s)	122, 194, 197, 601
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	292, 293
AsuC2I	CCSGG	1 cut(s)	838
BaeGI	GKGCMC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	4 cut(s)	134, 184, 206, 588
BccI	CCATC	2 cut(s)	149, 251
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	3 cut(s)	17, 272, 701
BfaI	CTAG	2 cut(s)	201, 350
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	7 cut(s)	102, 123, 126, 156, 195, 198, 602
BlsI	GCNGC	7 cut(s)	103, 124, 127, 157, 196, 199, 603
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	474, 838
BmgT120I	GGNCC	2 cut(s)	292, 293
BmiI	GGNNCC	2 cut(s)	294, 611
BmrFI	CCNGG	2 cut(s)	474, 838
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	3 cut(s)	406, 882, 916
BmuI	ACTGGG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	873
BsaJI	CCNNGG	3 cut(s)	96, 769, 794
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 290, 406, 619, 909
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	130, 667
BseBI	CCWGG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	873
BseDI	CCNNGG	3 cut(s)	96, 769, 794
BseLI	CCNNNNNNNGG	5 cut(s)	246, 290, 406, 619, 909
BseMII	CTCAG	2 cut(s)	569, 619
BseNI	ACTGG	2 cut(s)	130, 667
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	134, 184, 206, 588
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	104, 294
BshVI	ATCGAT	1 cut(s)	873
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	3 cut(s)	53, 84, 837
BslFI	GGGAC	2 cut(s)	45, 561
BslI	CCNNNNNNNGG	5 cut(s)	246, 290, 406, 619, 909
BsmAI	GTCTC	3 cut(s)	17, 272, 701
BsmFI	GGGAC	2 cut(s)	45, 561
BsnI	GGCC	2 cut(s)	104, 294
Bsp120I	GGGCCC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	296, 697
Bsp143I	GATC	2 cut(s)	790, 870
Bsp19I	CCATGG	3 cut(s)	96, 769, 794
BspACI	CCGC	5 cut(s)	41, 101, 126, 156, 178
BspANI	GGCC	2 cut(s)	104, 294
BspCNI	CTCAG	2 cut(s)	570, 618
BspDI	ATCGAT	1 cut(s)	873
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	294, 611
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	785
BsrBI	CCGCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	130, 667
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	96, 769, 794
BssMI	GATC	2 cut(s)	790, 870
BssSI	CACGAG	1 cut(s)	696
BssT1I	CCWWGG	3 cut(s)	96, 769, 794
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	309, 565, 805
BstC8I	GCNNGC	2 cut(s)	85, 421
BstDEI	CTNAG	2 cut(s)	578, 605
BstDSI	CCRYGG	3 cut(s)	96, 769, 794
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	793, 873
BstMAI	GTCTC	3 cut(s)	17, 272, 701
BstMBI	GATC	2 cut(s)	790, 870
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 206
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	472, 836
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	4 cut(s)	134, 184, 206, 588
Bsu15I	ATCGAT	1 cut(s)	873
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	104, 294
BsuTUI	ATCGAT	1 cut(s)	873
BtgI	CCRYGG	3 cut(s)	96, 769, 794
BtgZI	GCGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	885
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	85, 421
CaiI	CAGNNNCTG	1 cut(s)	631
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	292, 293
ClaI	ATCGAT	1 cut(s)	873
Csp6I	GTAC	3 cut(s)	67, 310, 638
CviAII	CATG	5 cut(s)	97, 401, 617, 770, 795
CviQI	GTAC	3 cut(s)	67, 310, 638
DdeI	CTNAG	2 cut(s)	578, 605
DpnI	GATC	2 cut(s)	792, 872
DpnII	GATC	2 cut(s)	790, 870
EaeI	YGGCCR	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	96, 769, 794
Eco24I	GRGCYC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	3 cut(s)	96, 769, 794
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	3 cut(s)	96, 769, 794
FaeI	CATG	5 cut(s)	100, 404, 620, 773, 798
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	45, 561
FatI	CATG	5 cut(s)	96, 400, 616, 769, 794
FauI	CCCGC	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	7 cut(s)	102, 123, 126, 156, 195, 198, 602
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	7 cut(s)	102, 123, 126, 156, 195, 198, 602
FspBI	CTAG	2 cut(s)	201, 350
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	7 cut(s)	102, 123, 126, 156, 195, 198, 602
HaeIII	GGCC	2 cut(s)	104, 294
HapII	CCGG	3 cut(s)	53, 84, 837
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	100, 404, 620, 773, 798
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	4 cut(s)	93, 135, 815, 834
HindII	GTYRAC	4 cut(s)	93, 135, 815, 834
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	8 cut(s)	89, 117, 329, 448, 582, 628, 709, 875
HpaII	CCGG	3 cut(s)	53, 84, 837
Hpy166II	GTNNAC	4 cut(s)	93, 135, 815, 834
Hpy188I	TCNGA	4 cut(s)	116, 376, 431, 912
Hpy188III	TCNNGA	2 cut(s)	362, 928
Hpy8I	GTNNAC	4 cut(s)	93, 135, 815, 834
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	651
HpyCH4III	ACNGT	3 cut(s)	309, 565, 805
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	5 cut(s)	323, 530, 701, 734, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 206
HpyF3I	CTNAG	2 cut(s)	578, 605
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	5 cut(s)	100, 404, 620, 773, 798
HspAI	GCGC	1 cut(s)	75
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	790, 870
LmnI	GCTCC	4 cut(s)	55, 117, 179, 206
Lsp1109I	GCAGC	4 cut(s)	134, 184, 206, 588
LweI	GCATC	3 cut(s)	406, 882, 916
MaeI	CTAG	2 cut(s)	201, 350
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	2 cut(s)	345, 658
MalI	GATC	2 cut(s)	792, 872
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	2 cut(s)	790, 870
MboII	GAAGA	3 cut(s)	529, 677, 680
MfeI	CAATTG	2 cut(s)	702, 897
MhlI	GDGCHC	2 cut(s)	296, 697
MluCI	AATT	4 cut(s)	212, 702, 783, 897
MlyI	GAGTC	3 cut(s)	98, 126, 703
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	9 cut(s)	148, 161, 184, 191, 283, 347, 474, 613, 673
MreI	CGCCGGCG	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	2 cut(s)	393, 782
MslI	CAYNNNNRTG	1 cut(s)	943
MspA1I	CMGCKG	2 cut(s)	197, 601
MspI	CCGG	3 cut(s)	53, 84, 837
MspR9I	CCNGG	2 cut(s)	474, 838
MunI	CAATTG	2 cut(s)	702, 897
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	164, 206
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	3 cut(s)	96, 769, 794
NdeII	GATC	2 cut(s)	790, 870
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	5 cut(s)	100, 404, 620, 773, 798
NlaIV	GGNNCC	2 cut(s)	294, 611
NmuCI	GTSAC	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	5 cut(s)	329, 448, 582, 628, 875
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	7 cut(s)	103, 124, 127, 157, 196, 199, 603
PleI	GAGTC	3 cut(s)	97, 125, 703
PpsI	GAGTC	3 cut(s)	97, 125, 703
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	294, 611
PspOMI	GGGCCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	292, 293
PstNI	CAGNNNCTG	1 cut(s)	631
PvuII	CAGCTG	2 cut(s)	197, 601
RsaI	GTAC	3 cut(s)	68, 311, 639
RsaNI	GTAC	3 cut(s)	67, 310, 638
RseI	CAYNNNNRTG	1 cut(s)	943
SalI	GTCGAC	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	393, 782
SatI	GCNGC	7 cut(s)	102, 123, 126, 156, 195, 198, 602
Sau3AI	GATC	2 cut(s)	790, 870
Sau96I	GGNCC	2 cut(s)	292, 293
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	3 cut(s)	98, 126, 703
ScrFI	CCNGG	2 cut(s)	474, 838
SduI	GDGCHC	2 cut(s)	296, 697
SfaNI	GCATC	3 cut(s)	406, 882, 916
SfcI	CTRYAG	1 cut(s)	846
SgrAI	CRCCGGYG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	943
Sse9I	AATT	4 cut(s)	212, 702, 783, 897
SsiI	CCGC	5 cut(s)	41, 101, 126, 156, 178
SspMI	CTAG	2 cut(s)	201, 350
StyD4I	CCNGG	2 cut(s)	472, 836
StyI	CCWWGG	3 cut(s)	96, 769, 794
TaaI	ACNGT	3 cut(s)	309, 565, 805
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	814, 873
TasI	AATT	4 cut(s)	212, 702, 783, 897
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	3 cut(s)	104, 128, 158
TfiI	GAWTC	5 cut(s)	329, 448, 582, 628, 875
Tru1I	TTAA	2 cut(s)	393, 782
Tru9I	TTAA	2 cut(s)	393, 782
TscAI	CASTG	1 cut(s)	885
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	4 cut(s)	122, 194, 197, 601
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	885
Van91I	CCANNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	814
XspI	CTAG	2 cut(s)	201, 350
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.