Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

16246659 .. 16248695

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCCCCAAACCCTCCAAGGCCGACAAGAAGATCGCCTACGATTCCAAGCTCTGCTCCCTCCTCGACGAGTATGGCCAGATCCTCATCGTCGCCGCCGACAACGTCGGCTCCAAGCAGCTCCAGAACATCCGCAAGGGGCTGCGCGGCGACTCCGTCGTTCTGATGGGGAAGAACACAATGATGAAGCGCTCCGTCAGGATCCATGCGGAGAAGACCGGCAACAGTGCCTACCTCAACCTCGTCCCCCTCCTTGTGGGCAACGTCGGTCTGATTTTCACCAAGGGTGACCTGAAGGAAGTGAGCGAAGAGGTTGCCAAGTACAAGGTTGGAGCCCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTGGTTCCTCCTGGTAACACTGGTCTTGACCCATCTCAGACCTCTTTCTTCCAGGTTCTCAACATCCCCACTAAGATTAACAAGGGAACTGTCGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGAGACAAGGTTGGCTCTTCTGAGGCTGCCCTCCTTGCAAAGCTTGGAATCAGGCCATTCTCATACGGTCTCGTTGTTGAGATGGTGTATGACAACGGTTCCGTCTTCAGCCCAGAGGTGCTTAATCTGACTGAGGATGATCTCATGGAGAAGTTTGCTTCTGGTGTCTCAATGGTCACTTCATTGGCGTTGGCCATCTCATACCCCACCCTTGCAGCTGCACCACACATGTTCCTCAACGCCTACAAGAACGTGTTGGCAGTGTGTATTGCCACCGAATATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAAGTTTGCCGTTGCTGCAGCCCCCGTTGCTGCTGCTGCTTCAGGAGGTGCTCCAGCAGCTGCTAAGGAGGAAGAGAAGAAGCCCGAGCCGGAAGAGGAATCCGACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

322

Amino Acids

34.25

Weight (kDa)

5.37

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	96, 133, 147, 209
AclWI	GGATC	3 cut(s)	76, 196, 209
AcoI	YGGCCR	2 cut(s)	76, 690
AcuI	CTGAAG	3 cut(s)	314, 589, 852
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	2 cut(s)	726, 750
AgsI	TTSAA	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	382, 423
AluBI	AGCT	5 cut(s)	52, 121, 541, 716, 887
AluI	AGCT	5 cut(s)	52, 121, 541, 716, 887
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	3 cut(s)	495, 572, 670
AlwI	GGATC	3 cut(s)	76, 196, 209
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	2 cut(s)	823, 911
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	5 cut(s)	3, 21, 76, 551, 690
AspLEI	GCGC	2 cut(s)	147, 192
AspS9I	GGNCC	2 cut(s)	4, 820
AsuHPI	GGTGA	2 cut(s)	271, 299
AvaI	CYCGRG	2 cut(s)	823, 911
AvaII	GGWCC	1 cut(s)	820
BalI	TGGCCA	2 cut(s)	78, 692
BamHI	GGATCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	221, 595
Bbv12I	GWGCWC	1 cut(s)	880
BccI	CCATC	4 cut(s)	160, 412, 574, 701
BceAI	ACGGC	1 cut(s)	821
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	384, 425
BcoDI	GTCTC	3 cut(s)	495, 572, 670
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	384, 425
Bme18I	GGWCC	1 cut(s)	820
BmeT110I	CYCGRG	2 cut(s)	823, 911
BmgT120I	GGNCC	2 cut(s)	4, 820
BmiI	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
BmrFI	CCNGG	2 cut(s)	384, 425
BpiI	GAAGAC	2 cut(s)	221, 595
BpmI	CTGGAG	2 cut(s)	107, 864
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	18, 282
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	384, 425
BseDI	CCNNGG	2 cut(s)	18, 282
BseGI	GGATG	3 cut(s)	129, 435, 640
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	3 cut(s)	422, 510, 621
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BsiHKAI	GWGCWC	1 cut(s)	880
BsiHKCI	CYCGRG	2 cut(s)	823, 911
BsiSI	CCGG	2 cut(s)	219, 917
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	3 cut(s)	495, 572, 670
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	5 cut(s)	5, 23, 78, 553, 692
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	2 cut(s)	823, 911
Bsp1286I	GDGCHC	2 cut(s)	337, 880
Bsp143I	GATC	4 cut(s)	33, 81, 201, 637
BspACI	CCGC	4 cut(s)	96, 133, 147, 209
BspANI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BspCNI	CTCAG	3 cut(s)	421, 511, 622
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	3 cut(s)	76, 196, 209
BspQI	GCTCTTC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	18, 282
BssMI	GATC	4 cut(s)	33, 81, 201, 637
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	18, 282
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	384, 425
Bst4CI	ACNGT	4 cut(s)	227, 463, 566, 596
Bst6I	CTCTTC	4 cut(s)	303, 520, 894, 915
BstDEI	CTNAG	5 cut(s)	408, 444, 519, 630, 891
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	129, 435, 640
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	147, 192
BstKTI	GATC	4 cut(s)	36, 84, 204, 640
BstMAI	GTCTC	3 cut(s)	495, 572, 670
BstMBI	GATC	4 cut(s)	33, 81, 201, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
BstNI	CCWGG	2 cut(s)	384, 425
BstNSI	RCATGY	1 cut(s)	730
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	382, 423
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	1 cut(s)	147
BstV2I	GAAGAC	2 cut(s)	221, 595
BstX2I	RGATCY	2 cut(s)	81, 201
BstYI	RGATCY	2 cut(s)	81, 201
BsuRI	GGCC	5 cut(s)	5, 23, 78, 553, 692
BtsCI	GGATG	3 cut(s)	129, 435, 640
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	232, 390, 765
CaiI	CAGNNNCTG	1 cut(s)	887
CfoI	GCGC	2 cut(s)	147, 192
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	4, 820
Csp6I	GTAC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	206, 643, 727
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	5 cut(s)	408, 444, 519, 630, 891
DpnI	GATC	4 cut(s)	35, 83, 203, 639
DpnII	GATC	4 cut(s)	33, 81, 201, 637
EaeI	YGGCCR	2 cut(s)	76, 690
Eam1104I	CTCTTC	4 cut(s)	303, 520, 894, 915
EarI	CTCTTC	4 cut(s)	303, 520, 894, 915
Eco130I	CCWWGG	2 cut(s)	18, 282
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	820
Eco47III	AGCGCT	1 cut(s)	191
Eco57I	CTGAAG	3 cut(s)	314, 589, 852
Eco88I	CYCGRG	2 cut(s)	823, 911
Eco91I	GGTNACC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	820
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	382, 423
EcoT14I	CCWWGG	2 cut(s)	18, 282
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	18, 282
FaeI	CATG	3 cut(s)	209, 646, 730
FaiI	YATR	7 cut(s)	75, 207, 562, 588, 644, 700, 728
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	205, 642, 726
FokI	GGATG	3 cut(s)	116, 422, 647
FriOI	GRGCYC	1 cut(s)	337
GlaI	GCGC	2 cut(s)	146, 191
GsuI	CTGGAG	2 cut(s)	107, 864
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	5 cut(s)	5, 23, 78, 553, 692
HapII	CCGG	2 cut(s)	219, 917
HhaI	GCGC	2 cut(s)	147, 192
Hin1II	CATG	3 cut(s)	209, 646, 730
Hin6I	GCGC	2 cut(s)	145, 190
HinP1I	GCGC	2 cut(s)	145, 190
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	44, 152, 546, 926
HpaII	CCGG	2 cut(s)	219, 917
HphI	GGTGA	2 cut(s)	271, 299
Hpy188I	TCNGA	6 cut(s)	165, 273, 411, 520, 627, 931
Hpy188III	TCNNGA	5 cut(s)	124, 199, 398, 493, 870
Hpy99I	CGWCG	6 cut(s)	71, 95, 110, 161, 269, 935
HpyAV	CCTTC	3 cut(s)	289, 490, 793
HpyCH4III	ACNGT	4 cut(s)	227, 463, 566, 596
HpyCH4IV	ACGT	3 cut(s)	105, 264, 750
HpyCH4V	TGCA	4 cut(s)	536, 713, 719, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
HpyF3I	CTNAG	5 cut(s)	408, 444, 519, 630, 891
HpySE526I	ACGT	3 cut(s)	105, 264, 750
Hsp92II	CATG	3 cut(s)	209, 646, 730
HspAI	GCGC	2 cut(s)	145, 190
Kzo9I	GATC	4 cut(s)	33, 81, 201, 637
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	7 cut(s)	62, 116, 126, 197, 332, 364, 883
MaeII	ACGT	3 cut(s)	105, 264, 750
MaeIII	GTNAC	3 cut(s)	287, 386, 673
MalI	GATC	4 cut(s)	35, 83, 203, 639
MboI	GATC	4 cut(s)	33, 81, 201, 637
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	2 cut(s)	81, 201
MhlI	GDGCHC	2 cut(s)	337, 880
MlsI	TGGCCA	2 cut(s)	78, 692
MluCI	AATT	1 cut(s)	363
MluNI	TGGCCA	2 cut(s)	78, 692
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	310, 954
Mox20I	TGGCCA	2 cut(s)	78, 692
MscI	TGGCCA	2 cut(s)	78, 692
MseI	TTAA	3 cut(s)	450, 621, 964
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	78, 692
MspA1I	CMGCKG	2 cut(s)	716, 887
MspI	CCGG	2 cut(s)	219, 917
MspR9I	CCNGG	2 cut(s)	384, 425
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	384, 425
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
NdeII	GATC	4 cut(s)	33, 81, 201, 637
NlaIII	CATG	3 cut(s)	209, 646, 730
NlaIV	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
NmuCI	GTSAC	2 cut(s)	287, 673
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	44, 546, 926
PflFI	GACNNNGTC	2 cut(s)	104, 155
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	820
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	2 cut(s)	382, 423
PspEI	GGTNACC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	382, 423
PspN4I	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
PspPI	GGNCC	2 cut(s)	4, 820
PspPPI	RGGWCCY	1 cut(s)	820
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	887
PsuI	RGATCY	2 cut(s)	81, 201
PsyI	GACNNNGTC	2 cut(s)	104, 155
PvuII	CAGCTG	2 cut(s)	716, 887
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	450, 621, 964
Sau3AI	GATC	4 cut(s)	33, 81, 201, 637
Sau96I	GGNCC	2 cut(s)	4, 820
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	384, 425
SduI	GDGCHC	2 cut(s)	337, 880
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	4 cut(s)	96, 133, 147, 209
SspI	AATATT	1 cut(s)	779
StyD4I	CCNGG	2 cut(s)	382, 423
StyI	CCWWGG	2 cut(s)	18, 282
TaaI	ACNGT	4 cut(s)	227, 463, 566, 596
TaiI	ACGT	3 cut(s)	108, 267, 753
TaqI	TCGA	2 cut(s)	66, 465
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	2 cut(s)	98, 150
TfiI	GAWTC	3 cut(s)	44, 546, 926
Tru1I	TTAA	3 cut(s)	450, 621, 964
Tru9I	TTAA	3 cut(s)	450, 621, 964
TscAI	CASTG	3 cut(s)	232, 397, 765
TseFI	GTSAC	2 cut(s)	287, 673
Tsp45I	GTSAC	2 cut(s)	287, 673
TspDTI	ATGAA	2 cut(s)	200, 669
TspGWI	ACGGA	3 cut(s)	145, 184, 589
TspRI	CASTG	3 cut(s)	232, 397, 765
Tth111I	GACNNNGTC	2 cut(s)	104, 155
VpaK11BI	GGWCC	1 cut(s)	820
XceI	RCATGY	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.