Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

45661132 .. 45662927

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG324000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGCAAGCTCTCCAAGGCCGATAAGAAGATCAACTACGACGCCAAGCTCTGCAAGCTTCTCGAGGACTATGGCCAGGTGCTCATCGTCGCCGCCGATAACGTCGGCTCCAATCAGCTCCAGAACATCCGCAAGGGTCTCCGCGGCGACTCCACTGTGCTCATGGGGAAGAACACCATGATGAAGAGGTCCATCAAGATTCATGCTGCCAAGACCGGCAACGATGCTTACCTCAACCTCGTCCCCCTCCTTGTGGGTAATGTTGGTTTGATCTTCACCAAGGGTGATTTGAAGGAAGTCAGTGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGACCCATCCCAGACATCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTAGAAATCATTACCCCTGTTGAACTTATCAGGAAGGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTTGCCAAGCTTGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGACAATGGATCTGTCTTCAGCCCAGAGGTGCTTAATCTTACTGAGGATGATCTTATGATTAAGTTTGCTTCTGGTGTCTCCAATGTCACAGCATTGGCACTGGCCATTTCCTACCCAACAATTGCAGCTGCACCACATATGTTCCTCAATGCCTACAAGAATGTGTTGGCAATTGCTGTGGCTACTGAGTATTCCTTCCCTGAAGCTGATAAGGTCAAGGAGTATCTCGAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

273

Amino Acids

29.34

Weight (kDa)

8.72

Isoelectric Point (pI)

24.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	7 - 107	1e-17	Ribosomal protein L10
RL10P_insert	PF17777	113 - 182	1e-21	Insertion domain in 60S ribosomal protein L10P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AciI	CCGC	4 cut(s)	93, 130, 142, 144
AclWI	GGATC	2 cut(s)	551, 601
AcoI	YGGCCR	2 cut(s)	73, 687
AcuI	CTGAAG	2 cut(s)	586, 807
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	320, 457
AfiI	CCNNNNNNNGG	2 cut(s)	253, 540
AgsI	TTSAA	2 cut(s)	292, 482
AjnI	CCWGG	3 cut(s)	75, 379, 420
AluBI	AGCT	9 cut(s)	10, 49, 58, 118, 332, 538, 713, 791, 817
AluI	AGCT	9 cut(s)	10, 49, 58, 118, 332, 538, 713, 791, 817
Alw21I	GWGCWC	4 cut(s)	84, 162, 334, 429
Alw26I	GTCTC	3 cut(s)	143, 398, 667
AlwI	GGATC	2 cut(s)	551, 601
Ama87I	CYCGRG	2 cut(s)	62, 812
AoxI	GGCC	4 cut(s)	18, 73, 548, 687
ApeKI	GCWGC	4 cut(s)	206, 521, 710, 713
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	268, 296, 509
AvaI	CYCGRG	2 cut(s)	62, 812
AvaII	GGWCC	1 cut(s)	189
BalI	TGGCCA	2 cut(s)	75, 689
BanII	GRGCYC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	504, 592
Bbv12I	GWGCWC	4 cut(s)	84, 162, 334, 429
BbvI	GCAGC	4 cut(s)	193, 508, 700, 722
BccI	CCATC	3 cut(s)	200, 409, 571
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	3 cut(s)	77, 381, 422
BcoDI	GTCTC	3 cut(s)	143, 398, 667
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	6 cut(s)	93, 145, 207, 522, 711, 714
BlsI	GCNGC	6 cut(s)	94, 146, 208, 523, 712, 715
Bme1390I	CCNGG	3 cut(s)	77, 381, 422
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	2 cut(s)	62, 812
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	3 cut(s)	77, 381, 422
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	504, 592
BpmI	CTGGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	143, 398
BsaJI	CCNNGG	3 cut(s)	15, 142, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 540
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	394, 690
BseBI	CCWGG	3 cut(s)	77, 381, 422
BseDI	CCNNGG	3 cut(s)	15, 142, 279
BseGI	GGATG	3 cut(s)	126, 401, 637
BseLI	CCNNNNNNNGG	2 cut(s)	253, 540
BseMII	CTCAG	3 cut(s)	507, 618, 762
BseNI	ACTGG	2 cut(s)	394, 690
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	4 cut(s)	193, 508, 700, 722
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	20, 75, 550, 689
BsiHKAI	GWGCWC	4 cut(s)	84, 162, 334, 429
BsiHKCI	CYCGRG	2 cut(s)	62, 812
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	253, 540
BsmAI	GTCTC	3 cut(s)	143, 398, 667
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	20, 75, 550, 689
Bso31I	GGTCTC	2 cut(s)	143, 398
BsoBI	CYCGRG	2 cut(s)	62, 812
Bsp1286I	GDGCHC	4 cut(s)	84, 162, 334, 429
Bsp143I	GATC	5 cut(s)	30, 270, 543, 593, 634
BspACI	CCGC	4 cut(s)	93, 130, 142, 144
BspANI	GGCC	4 cut(s)	20, 75, 550, 689
BspCNI	CTCAG	3 cut(s)	508, 619, 763
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	551, 601
BspTNI	GGTCTC	2 cut(s)	143, 398
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	394, 690
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	15, 142, 279
BssMI	GATC	5 cut(s)	30, 270, 543, 593, 634
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	15, 279
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	3 cut(s)	77, 381, 422
Bst4CI	ACNGT	2 cut(s)	157, 460
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	8, 56
BstDEI	CTNAG	4 cut(s)	315, 516, 627, 771
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	126, 401, 637
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	5 cut(s)	33, 273, 546, 596, 637
BstMAI	GTCTC	3 cut(s)	143, 398, 667
BstMBI	GATC	5 cut(s)	30, 270, 543, 593, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 530
BstNI	CCWGG	3 cut(s)	77, 381, 422
BstSCI	CCNGG	3 cut(s)	75, 379, 420
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	193, 508, 700, 722
BstV2I	GAAGAC	2 cut(s)	504, 592
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	4 cut(s)	20, 75, 550, 689
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	126, 401, 637
BtsIMutI	CAGTG	4 cut(s)	153, 307, 387, 683
Cac8I	GCNNGC	2 cut(s)	8, 56
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	189
Cfr42I	CCGCGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	319, 456
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	3 cut(s)	163, 178, 203
CviQI	GTAC	2 cut(s)	319, 456
DdeI	CTNAG	4 cut(s)	315, 516, 627, 771
DpnI	GATC	5 cut(s)	32, 272, 545, 595, 636
DpnII	GATC	5 cut(s)	30, 270, 543, 593, 634
EaeI	YGGCCR	2 cut(s)	73, 687
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	15, 279
Eco24I	GRGCYC	1 cut(s)	334
Eco31I	GGTCTC	2 cut(s)	143, 398
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	586, 807
Eco88I	CYCGRG	2 cut(s)	62, 812
EcoICRI	GAGCTC	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	75, 379, 420
EcoT14I	CCWWGG	2 cut(s)	15, 279
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	2 cut(s)	15, 279
FaeI	CATG	3 cut(s)	166, 181, 206
FaiI	YATR	9 cut(s)	72, 164, 179, 204, 561, 585, 641, 723, 725
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	162, 177, 202
FauNDI	CATATG	1 cut(s)	723
Fnu4HI	GCNGC	6 cut(s)	93, 145, 207, 522, 711, 714
FokI	GGATG	3 cut(s)	113, 388, 644
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	6 cut(s)	93, 145, 207, 522, 711, 714
GluI	GCNGC	6 cut(s)	93, 145, 207, 522, 711, 714
GsuI	CTGGAG	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	20, 75, 550, 689
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	166, 181, 206
HindIII	AAGCTT	2 cut(s)	56, 536
HinfI	GANTC	2 cut(s)	149, 199
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	268, 296, 509
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	7 cut(s)	62, 121, 196, 395, 490, 574, 812
Hpy99I	CGWCG	3 cut(s)	44, 92, 107
HpyAV	CCTTC	4 cut(s)	286, 487, 536, 790
HpyCH4III	ACNGT	2 cut(s)	157, 460
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	54, 710, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 530
HpyF3I	CTNAG	4 cut(s)	315, 516, 627, 771
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	166, 181, 206
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	30, 270, 543, 593, 634
LmnI	GCTCC	5 cut(s)	113, 123, 329, 337, 361
Lsp1109I	GCAGC	4 cut(s)	193, 508, 700, 722
LweI	GCATC	1 cut(s)	214
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	497, 670
MalI	GATC	5 cut(s)	32, 272, 545, 595, 636
MboI	GATC	5 cut(s)	30, 270, 543, 593, 634
MboII	GAAGA	7 cut(s)	40, 181, 196, 265, 409, 504, 592
MfeI	CAATTG	3 cut(s)	360, 705, 756
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	4 cut(s)	84, 162, 334, 429
MlsI	TGGCCA	2 cut(s)	75, 689
MluCI	AATT	3 cut(s)	360, 705, 756
MluNI	TGGCCA	2 cut(s)	75, 689
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	307, 461
Mox20I	TGGCCA	2 cut(s)	75, 689
MscI	TGGCCA	2 cut(s)	75, 689
MseI	TTAA	3 cut(s)	447, 618, 645
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	2 cut(s)	75, 689
MspA1I	CMGCKG	2 cut(s)	144, 713
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	77, 381, 422
MunI	CAATTG	3 cut(s)	360, 705, 756
MvaI	CCWGG	3 cut(s)	77, 381, 422
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	55, 530
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	5 cut(s)	30, 270, 543, 593, 634
NlaIII	CATG	3 cut(s)	166, 181, 206
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	497, 670
PaeR7I	CTCGAG	2 cut(s)	62, 812
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	6 cut(s)	94, 146, 208, 523, 712, 715
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	334
Psp6I	CCWGG	3 cut(s)	75, 379, 420
PspGI	CCWGG	3 cut(s)	75, 379, 420
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	2 cut(s)	320, 457
RsaNI	GTAC	2 cut(s)	319, 456
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	145
SaqAI	TTAA	3 cut(s)	447, 618, 645
SatI	GCNGC	6 cut(s)	93, 145, 207, 522, 711, 714
Sau3AI	GATC	5 cut(s)	30, 270, 543, 593, 634
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	77, 381, 422
SduI	GDGCHC	4 cut(s)	84, 162, 334, 429
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	459
Sfr274I	CTCGAG	2 cut(s)	62, 812
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	2 cut(s)	62, 812
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	62, 812
SmoI	CTYRAG	2 cut(s)	62, 812
Sse9I	AATT	3 cut(s)	360, 705, 756
SsiI	CCGC	4 cut(s)	93, 130, 142, 144
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	75, 379, 420
StyI	CCWWGG	2 cut(s)	15, 279
TaaI	ACNGT	2 cut(s)	157, 460
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	63, 396, 813
TasI	AATT	3 cut(s)	360, 705, 756
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	95, 147
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	447, 618, 645
Tru9I	TTAA	3 cut(s)	447, 618, 645
TscAI	CASTG	4 cut(s)	160, 307, 394, 690
TseFI	GTSAC	2 cut(s)	497, 670
TseI	GCWGC	4 cut(s)	206, 521, 710, 713
Tsp45I	GTSAC	2 cut(s)	497, 670
TspDTI	ATGAA	2 cut(s)	191, 197
TspRI	CASTG	4 cut(s)	160, 307, 394, 690
VpaK11BI	GGWCC	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XhoI	CTCGAG	2 cut(s)	62, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.