Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

14596645 .. 14598804

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G173900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCACCAAAACCCTCCAAGGCCGAGAAGAAGATCGCATACGACTCTAAGCTGTGCCAGCTTCTCGATGAGTATGGCCAGATCCTCATCGTGGCTGCAGACAACGTTGGCTCCAATCAGCTGCAGAACATCCGCAAGGGTCTGCGTGGAGACTCCATTGTTCTGATGGGTAAGAACACTATGATGAAGAGGTCAATCAGAATCCATGCTGAGAAGACCGGCAACAATGTATACCTGAACCTCGTCCCCCTTCTTGTGGGCAATGTGGGTCTGATTTTCACCAAGGGTGATTTGAAGGAAGTCAGCGAGGAGGTTGCCAAGTACAAGGTTGGAGCTCCCGCTCGTGTTGGTTTAGTTGCTCCAATTGATGTCGTTGTCCCTCCTGGAAACACTGGGCTGGACCCATCTCAGACCTCTTTCTTCCAGGTCTTGAATATCCCAACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTCCTTGCAAAGCTTGGAATTAGGCCATTCTCTTACGGTCTTGTTGTCCAGACCGTTTATGACAATGGTTCTGTCTTCAGCCCTGAGGTTCTGGATCTGACTGAGGATGACCTCATGGTGAAGTTTGCTTTAGGTGTCTCCATGGTCACTTCATTGGCGTTGGCCATTGCTTACCCAACGCTTGCAGCTGCCCCACACATGTTCCTTAACGCATACAAGAATGTGCTGGCAGTTTCTCTTGCCACAGAGTATACCTTCCCACAAGCAGAGAAGGTCAAGGAGTATTTGAAGGACCCTAGCAAGTTTGCTGCTGCTGTGGCCCCTGTTGCTGCTGATGCTGCACCAGCTGCTGCCGCCAAGGTGGAAGAGAAAAAGGAGGAGCCTGCTGAGGAATCGGATGAAGATATTGGTTTCAGTTTGTTTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

320

Amino Acids

34.17

Weight (kDa)

5.34

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	231, 779
AciI	CCGC	3 cut(s)	133, 339, 882
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	2 cut(s)	76, 630
AcoI	YGGCCR	2 cut(s)	76, 690
AcuI	CTGAAG	1 cut(s)	589
AfaI	GTAC	2 cut(s)	323, 460
AfiI	CCNNNNNNNGG	2 cut(s)	91, 256
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	5 cut(s)	295, 433, 467, 485, 817
AjnI	CCWGG	2 cut(s)	382, 423
AluBI	AGCT	7 cut(s)	52, 61, 121, 335, 541, 716, 875
AluI	AGCT	7 cut(s)	52, 61, 121, 335, 541, 716, 875
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	144, 670
AlwI	GGATC	2 cut(s)	76, 630
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	5 cut(s)	21, 76, 551, 690, 846
AspS9I	GGNCC	3 cut(s)	400, 820, 847
AsuHPI	GGTGA	4 cut(s)	271, 299, 512, 658
AvaII	GGWCC	2 cut(s)	400, 820
AxyI	CCTNAGG	1 cut(s)	612
BalI	TGGCCA	2 cut(s)	78, 692
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	3 cut(s)	221, 507, 595
Bbv12I	GWGCWC	1 cut(s)	337
BbvCI	CCTCAGC	1 cut(s)	915
BccI	CCATC	2 cut(s)	160, 412
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	384, 425
BcoDI	GTCTC	2 cut(s)	144, 670
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	2 cut(s)	96, 122
Bme1390I	CCNGG	2 cut(s)	384, 425
Bme18I	GGWCC	2 cut(s)	400, 820
BmgT120I	GGNCC	3 cut(s)	400, 820, 847
BmiI	GGNNCC	6 cut(s)	6, 112, 402, 822, 849, 909
BmrFI	CCNGG	2 cut(s)	384, 425
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	853
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	3 cut(s)	221, 507, 595
Bpu10I	CCTNAGC	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	18, 282, 669, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 256
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	612
Bse3DI	GCAATG	2 cut(s)	268, 693
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	384, 425
BseDI	CCNNGG	4 cut(s)	18, 282, 669, 885
BseGI	GGATG	3 cut(s)	129, 640, 931
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	91, 256
BseMI	GCAATG	2 cut(s)	268, 693
BseMII	CTCAG	6 cut(s)	201, 422, 510, 603, 621, 906
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	323, 920
BsgI	GTGCAG	1 cut(s)	852
BshFI	GGCC	5 cut(s)	23, 78, 553, 692, 848
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	230, 362
BslI	CCNNNNNNNGG	2 cut(s)	91, 256
BsmAI	GTCTC	2 cut(s)	144, 670
BsmFI	GGGAC	2 cut(s)	230, 362
BsnI	GGCC	5 cut(s)	23, 78, 553, 692, 848
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	33, 81, 622
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	3 cut(s)	133, 339, 882
BspANI	GGCC	5 cut(s)	23, 78, 553, 692, 848
BspCNI	CTCAG	6 cut(s)	202, 421, 511, 604, 622, 907
BspLI	GGNNCC	6 cut(s)	6, 112, 402, 822, 849, 909
BspMAI	CTGCAG	2 cut(s)	100, 126
BspPI	GGATC	2 cut(s)	76, 630
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	268, 693
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	18, 282, 669, 885
BssMI	GATC	3 cut(s)	33, 81, 622
BssNAI	GTATAC	2 cut(s)	232, 780
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	4 cut(s)	18, 282, 669, 885
Bst1107I	GTATAC	2 cut(s)	232, 780
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	384, 425
Bst4CI	ACNGT	3 cut(s)	463, 566, 583
Bst6I	CTCTTC	2 cut(s)	182, 888
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	59, 711, 756, 912
BstDEI	CTNAG	7 cut(s)	48, 210, 408, 519, 612, 630, 915
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	3 cut(s)	129, 640, 931
BstKTI	GATC	3 cut(s)	36, 84, 625
BstMAI	GTCTC	2 cut(s)	144, 670
BstMBI	GATC	3 cut(s)	33, 81, 622
BstMWI	GCNNNNNNNGC	9 cut(s)	58, 533, 845, 854, 863, 866, 872, 875, 881
BstNI	CCWGG	2 cut(s)	384, 425
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	382, 423
BstSFI	CTRYAG	2 cut(s)	96, 122
BstV2I	GAAGAC	3 cut(s)	221, 507, 595
BstX2I	RGATCY	2 cut(s)	81, 622
BstYI	RGATCY	2 cut(s)	81, 622
BstZ17I	GTATAC	2 cut(s)	232, 780
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	5 cut(s)	23, 78, 553, 692, 848
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	129, 640, 931
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	4 cut(s)	59, 711, 756, 912
CaiI	CAGNNNCTG	1 cut(s)	878
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	400, 820, 847
Csp6I	GTAC	2 cut(s)	322, 459
CviAII	CATG	4 cut(s)	206, 643, 670, 727
CviQI	GTAC	2 cut(s)	322, 459
DdeI	CTNAG	7 cut(s)	48, 210, 408, 519, 612, 630, 915
DpnI	GATC	3 cut(s)	35, 83, 624
DpnII	GATC	3 cut(s)	33, 81, 622
EaeI	YGGCCR	2 cut(s)	76, 690
Eam1104I	CTCTTC	2 cut(s)	182, 888
EarI	CTCTTC	2 cut(s)	182, 888
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	4 cut(s)	18, 282, 669, 885
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	400, 820
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	589
Eco81I	CCTNAGG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	820
EcoRII	CCWGG	2 cut(s)	382, 423
EcoT14I	CCWWGG	4 cut(s)	18, 282, 669, 885
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	4 cut(s)	18, 282, 669, 885
FaeI	CATG	4 cut(s)	209, 646, 673, 730
FaqI	GGGAC	2 cut(s)	230, 362
FatI	CATG	4 cut(s)	205, 642, 669, 726
FauI	CCCGC	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	231, 779
FokI	GGATG	3 cut(s)	116, 647, 938
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	825
HaeIII	GGCC	5 cut(s)	23, 78, 553, 692, 848
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	4 cut(s)	209, 646, 673, 730
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	44, 152, 201, 920
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	4 cut(s)	271, 299, 512, 658
Hpy166II	GTNNAC	2 cut(s)	232, 780
Hpy188I	TCNGA	7 cut(s)	165, 200, 273, 411, 520, 627, 925
Hpy188III	TCNNGA	5 cut(s)	65, 430, 493, 577, 620
Hpy8I	GTNNAC	2 cut(s)	232, 780
HpyAV	CCTTC	6 cut(s)	260, 289, 490, 793, 793, 811
HpyCH4III	ACNGT	3 cut(s)	463, 566, 583
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	98, 124, 536, 713, 869
HpyF10VI	GCNNNNNNNGC	9 cut(s)	58, 533, 845, 854, 863, 866, 872, 875, 881
HpyF3I	CTNAG	7 cut(s)	48, 210, 408, 519, 612, 630, 915
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	209, 646, 673, 730
Kzo9I	GATC	3 cut(s)	33, 81, 622
LmnI	GCTCC	5 cut(s)	116, 332, 340, 364, 907
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	500, 673
MalI	GATC	3 cut(s)	35, 83, 624
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	3 cut(s)	33, 81, 622
MboII	GAAGA	9 cut(s)	40, 43, 199, 226, 412, 507, 595, 905, 941
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	2 cut(s)	81, 622
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	2 cut(s)	78, 692
MluCI	AATT	2 cut(s)	363, 546
MluNI	TGGCCA	2 cut(s)	78, 692
MlyI	GAGTC	2 cut(s)	38, 146
MmeI	TCCRAC	1 cut(s)	310
Mox20I	TGGCCA	2 cut(s)	78, 692
MscI	TGGCCA	2 cut(s)	78, 692
MseI	TTAA	3 cut(s)	450, 735, 958
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	78, 692
MspA1I	CMGCKG	3 cut(s)	121, 716, 875
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	384, 425
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	384, 425
MwoI	GCNNNNNNNGC	9 cut(s)	58, 533, 845, 854, 863, 866, 872, 875, 881
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	3 cut(s)	33, 81, 622
NlaIII	CATG	4 cut(s)	209, 646, 673, 730
NlaIV	GGNNCC	6 cut(s)	6, 112, 402, 822, 849, 909
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	500, 673
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	201, 920
PfoI	TCCNGGA	1 cut(s)	382
PleI	GAGTC	2 cut(s)	38, 146
PpsI	GAGTC	2 cut(s)	38, 146
PpuMI	RGGWCCY	1 cut(s)	820
PscI	ACATGT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	2 cut(s)	382, 423
PspGI	CCWGG	2 cut(s)	382, 423
PspN4I	GGNNCC	6 cut(s)	6, 112, 402, 822, 849, 909
PspPI	GGNCC	3 cut(s)	400, 820, 847
PspPPI	RGGWCCY	1 cut(s)	820
PstI	CTGCAG	2 cut(s)	100, 126
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	81, 622
PvuII	CAGCTG	3 cut(s)	121, 716, 875
RsaI	GTAC	2 cut(s)	323, 460
RsaNI	GTAC	2 cut(s)	322, 459
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	450, 735, 958
Sau3AI	GATC	3 cut(s)	33, 81, 622
Sau96I	GGNCC	3 cut(s)	400, 820, 847
SchI	GAGTC	2 cut(s)	38, 146
ScrFI	CCNGG	2 cut(s)	384, 425
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	1 cut(s)	853
SfcI	CTRYAG	2 cut(s)	96, 122
SinI	GGWCC	2 cut(s)	400, 820
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	363, 546
SsiI	CCGC	3 cut(s)	133, 339, 882
SspMI	CTAG	1 cut(s)	825
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	382, 423
StyI	CCWWGG	4 cut(s)	18, 282, 669, 885
TaaI	ACNGT	3 cut(s)	463, 566, 583
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	363, 546
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	2 cut(s)	201, 920
Tru1I	TTAA	3 cut(s)	450, 735, 958
Tru9I	TTAA	3 cut(s)	450, 735, 958
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	500, 673
Tsp45I	GTSAC	2 cut(s)	500, 673
TspDTI	ATGAA	3 cut(s)	200, 669, 942
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	400, 820
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	2 cut(s)	231, 779
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.