Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Forward (+)

3521329 .. 3523071

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTGAAGGCAACAAAAGCAGAGAAGAAGATAGCGTATGACACAAAACTATGTCAGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGACAACGTCGGATCGACTCAGCTTCAGAACATCAGGAAAGGTCTTCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACACTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACTCTGGAAACACTGCAATTTTGAATCTGCTTCCCCTCCTTCAGGGAAACGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGGAAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTGCTCCTATTGATGTGGTTGTTCAACCTGGCAACACTGGTCTTGACCCATCTCAAACATCGTTCTTCCAGGTGCTTAACATTCCCACTAAGATTAACAAGGGTACTGTTGAAATTATCACCCCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCTAAGCTTGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGATAATGGATCAGTCTTCAGTCCAGAGGTTCTTGATCTTACTGAAGATCAACTTGTTGAAAAGTTTGCTTCTGGTATCTCTATGGTCACTTCCTTGGCTCTAGCTGTTTCTTACCCTACCCTTGCGGCTGCACCGCATATGTTCATCAATGCCTACAAGAATGCTTTAGCTATTGCTGTTGCTACTGACTACACTTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTAAAGGATCCCAGCAAGTTTGTTGTTGCTGCAGCGGCAGTGTCTGCGGATGCAGGTGGTGGTAGTGCTCAAGCTGGAGCTGCAGCTAAGGTAGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAGGGTGGTTTCGGTTTGTTTGACGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

323

Amino Acids

34.39

Weight (kDa)

5.07

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	7 - 107	2.2e-17	Ribosomal protein L10
RL10P_insert	PF17777	113 - 182	3.2e-21	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	233 - 320	1.2e-16	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	854
AciI	CCGC	6 cut(s)	92, 95, 710, 719, 845, 857
AclI	AACGTT	2 cut(s)	187, 261
AclWI	GGATC	4 cut(s)	115, 601, 812, 825
AcsI	RAATTY	1 cut(s)	806
AcuI	CTGAAG	4 cut(s)	104, 236, 586, 648
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	235, 377, 464, 644
AjnI	CCWGG	2 cut(s)	379, 420
AleI	CACNNNNGTG	1 cut(s)	476
Alw21I	GWGCWC	2 cut(s)	334, 880
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	4 cut(s)	115, 601, 812, 825
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	6 cut(s)	521, 713, 839, 842, 890, 893
ApoI	RAATTY	1 cut(s)	806
AsuHPI	GGTGA	4 cut(s)	16, 296, 463, 509
BamHI	GGATCC	1 cut(s)	817
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	4 cut(s)	131, 504, 592, 939
Bbv12I	GWGCWC	2 cut(s)	334, 880
BbvI	GCAGC	6 cut(s)	508, 700, 826, 854, 877, 905
BccI	CCATC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	381, 422
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	3 cut(s)	530, 566, 686
BfmI	CTRYAG	2 cut(s)	840, 891
BfuAI	ACCTGC	1 cut(s)	854
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	9 cut(s)	93, 522, 711, 714, 840, 843, 846, 891, 894
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	9 cut(s)	94, 523, 712, 715, 841, 844, 847, 892, 895
Bme1390I	CCNGG	2 cut(s)	381, 422
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	2 cut(s)	381, 422
BmsI	GCATC	1 cut(s)	850
BpiI	GAAGAC	4 cut(s)	131, 504, 592, 939
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	1 cut(s)	897
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	3 cut(s)	275, 771, 864
BsaJI	CCNNGG	1 cut(s)	678
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	381, 422
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	4 cut(s)	89, 128, 165, 507
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	2 cut(s)	320, 920
BseXI	GCAGC	6 cut(s)	508, 700, 826, 854, 877, 905
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	550
BsiHKAI	GWGCWC	2 cut(s)	334, 880
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	1 cut(s)	550
Bsp1286I	GDGCHC	2 cut(s)	334, 880
Bsp143I	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	6 cut(s)	92, 95, 710, 719, 845, 857
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	4 cut(s)	88, 127, 164, 508
BspLI	GGNNCC	1 cut(s)	819
BspMAI	CTGCAG	2 cut(s)	844, 895
BspMI	ACCTGC	1 cut(s)	854
BspPI	GGATC	4 cut(s)	115, 601, 812, 825
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	678
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	381, 422
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	960
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstDEI	CTNAG	8 cut(s)	75, 82, 114, 151, 441, 516, 534, 897
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	865
BstKTI	GATC	8 cut(s)	81, 110, 273, 289, 596, 622, 634, 820
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 490, 530, 845, 854, 890
BstNI	CCWGG	2 cut(s)	381, 422
BstSCI	CCNGG	2 cut(s)	379, 420
BstSFI	CTRYAG	2 cut(s)	840, 891
BstV1I	GCAGC	6 cut(s)	508, 700, 826, 854, 877, 905
BstV2I	GAAGAC	4 cut(s)	131, 504, 592, 939
BstX2I	RGATCY	2 cut(s)	78, 817
BstYI	RGATCY	2 cut(s)	78, 817
BsuRI	GGCC	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	865
BtsI	GCAGTG	2 cut(s)	222, 855
BtsIMutI	CAGTG	4 cut(s)	159, 222, 387, 855
BveI	ACCTGC	1 cut(s)	854
CaiI	CAGNNNCTG	1 cut(s)	854
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	8 cut(s)	75, 82, 114, 151, 441, 516, 534, 897
DpnI	GATC	8 cut(s)	80, 109, 272, 288, 595, 621, 633, 819
DpnII	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	678
Eco147I	AGGCCT	1 cut(s)	550
Eco57I	CTGAAG	4 cut(s)	104, 236, 586, 648
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	379, 420
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	1 cut(s)	166
FalI	AAGNNNNNCTT	4 cut(s)	621, 653, 794, 826
FatI	CATG	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	723
Fnu4HI	GCNGC	9 cut(s)	93, 522, 711, 714, 840, 843, 846, 891, 894
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	9 cut(s)	93, 522, 711, 714, 840, 843, 846, 891, 894
FspBI	CTAG	3 cut(s)	530, 566, 686
GluI	GCNGC	9 cut(s)	93, 522, 711, 714, 840, 843, 846, 891, 894
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	5 cut(s)	112, 149, 198, 235, 920
HphI	GGTGA	4 cut(s)	16, 296, 463, 509
Hpy188I	TCNGA	6 cut(s)	78, 107, 123, 208, 517, 925
Hpy188III	TCNNGA	5 cut(s)	130, 216, 395, 608, 617
Hpy99I	CGWCG	2 cut(s)	68, 107
HpyAV	CCTTC	3 cut(s)	260, 536, 790
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	3 cut(s)	102, 187, 261
HpyCH4V	TGCA	5 cut(s)	227, 716, 842, 863, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 490, 530, 845, 854, 890
HpyF3I	CTNAG	8 cut(s)	75, 82, 114, 151, 441, 516, 534, 897
HpySE526I	ACGT	3 cut(s)	102, 187, 261
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
LmnI	GCTCC	4 cut(s)	337, 361, 481, 887
Lsp1109I	GCAGC	6 cut(s)	508, 700, 826, 854, 877, 905
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	3 cut(s)	530, 566, 686
MaeII	ACGT	3 cut(s)	102, 187, 261
MaeIII	GTNAC	2 cut(s)	497, 670
MalI	GATC	8 cut(s)	80, 109, 272, 288, 595, 621, 633, 819
MboI	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
MflI	RGATCY	2 cut(s)	78, 817
MhlI	GDGCHC	2 cut(s)	334, 880
MluCI	AATT	3 cut(s)	228, 465, 806
MlyI	GAGTC	2 cut(s)	106, 143
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	8 cut(s)	257, 298, 301, 511, 604, 795, 898, 934
MseI	TTAA	3 cut(s)	429, 447, 812
MslI	CAYNNNNRTG	2 cut(s)	179, 476
MspA1I	CMGCKG	1 cut(s)	845
MspR9I	CCNGG	2 cut(s)	381, 422
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	381, 422
MwoI	GCNNNNNNNGC	6 cut(s)	17, 490, 530, 845, 854, 890
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	819
NmuCI	GTSAC	2 cut(s)	497, 670
OliI	CACNNNNGTG	1 cut(s)	476
PaqCI	CACCTGC	1 cut(s)	854
PceI	AGGCCT	1 cut(s)	550
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	3 cut(s)	198, 235, 920
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	9 cut(s)	94, 523, 712, 715, 841, 844, 847, 892, 895
PleI	GAGTC	2 cut(s)	106, 143
PpsI	GAGTC	2 cut(s)	106, 143
Psp1406I	AACGTT	2 cut(s)	187, 261
Psp6I	CCWGG	2 cut(s)	379, 420
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	2 cut(s)	379, 420
PspN4I	GGNNCC	1 cut(s)	819
PstI	CTGCAG	2 cut(s)	844, 895
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	78, 817
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	2 cut(s)	179, 476
SaqAI	TTAA	3 cut(s)	429, 447, 812
SatI	GCNGC	9 cut(s)	93, 522, 711, 714, 840, 843, 846, 891, 894
Sau3AI	GATC	8 cut(s)	78, 107, 270, 286, 593, 619, 631, 817
SchI	GAGTC	2 cut(s)	106, 143
ScrFI	CCNGG	2 cut(s)	381, 422
SduI	GDGCHC	2 cut(s)	334, 880
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	2 cut(s)	840, 891
SmiMI	CAYNNNNRTG	2 cut(s)	179, 476
SmlI	CTYRAG	3 cut(s)	290, 786, 879
SmoI	CTYRAG	3 cut(s)	290, 786, 879
Sse9I	AATT	3 cut(s)	228, 465, 806
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	6 cut(s)	92, 95, 710, 719, 845, 857
SspMI	CTAG	3 cut(s)	530, 566, 686
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	379, 420
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	3 cut(s)	105, 190, 264
TaqI	TCGA	2 cut(s)	63, 110
TasI	AATT	3 cut(s)	228, 465, 806
TauI	GCSGC	3 cut(s)	95, 713, 848
TfiI	GAWTC	3 cut(s)	198, 235, 920
Tru1I	TTAA	3 cut(s)	429, 447, 812
Tru9I	TTAA	3 cut(s)	429, 447, 812
TscAI	CASTG	4 cut(s)	159, 229, 394, 855
TseFI	GTSAC	2 cut(s)	497, 670
TseI	GCWGC	6 cut(s)	521, 713, 839, 842, 890, 893
Tsp45I	GTSAC	2 cut(s)	497, 670
TspDTI	ATGAA	2 cut(s)	197, 718
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	4 cut(s)	159, 229, 394, 855
Tth111I	GACNNNGTC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	806
XspI	CTAG	3 cut(s)	530, 566, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.