Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

18692005 .. 18694723

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCAAGCTATCCAAGGCCGAGAAGAAGATCAACTACGACGCCAAGCTCTGCAGTCTCTTGGAAGACTATGGCCAGGTCCTCATCGTCGCCGCCGATAACGTGGGCTCCACTCAGCTGCAGAACATCCGCAAAGGTCTACGTGGCGACTCGACTGTTCTCATGGGAAAGAACACCATGATGAAGAGGAGTATCAAGATCCATGCCGCCAAGACCGGTAACGATGCTTACCTCAACCTCGTCCCCCTCCTTGTGGGTAATGTTGGATTGATCTTCACCAAGGGAGATTTGAAGGAAGTCAGTGAGGAGGTGGCCAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCCATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGACCCGTCCCAGACCTCTTTCTTCCAGGTCTTGAACATTCCGACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTTGCCAAGCTCGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGACAATGGATCTGTCTTCAGCCCAGAGGTGCTTGATCTGACTGAGGATGACCTCATGATTAAGTTTGCTTCTGGTGTCTCCAATGTCACAGCATTGGCATTGGCCATTTCATACCCGACAATTGCGGCCGCACCACACATGTTCCTCAATGCCTACAAGAATGTGCTGGCAATTGCTGTTGCTACCGAGTATAGCTTCCCCCAAGCTGACAAGGTCAAGGAGTATCTGGAGGATCCCTCCAAGTTTGCTGTTTCCGTGGCTGCTCCTGCTGCAGCTGCTGGTGGAGCCGCTGCCCCTGCTGCAGCCGCTAAAGAGGAAGCAAAGAAGGAAGAGCCAGCTGAGGAGAGTGACGATGACATGGGCTTTAGCCTGTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

322

Amino Acids

33.95

Weight (kDa)

5.32

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	6 - 107	1.7e-17	Ribosomal protein L10
RL10P_insert	PF17777	113 - 182	5.4e-22	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	233 - 320	1.3e-23	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	7 cut(s)	93, 130, 207, 710, 714, 873, 891
AclWI	GGATC	5 cut(s)	193, 551, 601, 812, 825
AcoI	YGGCCR	4 cut(s)	73, 312, 687, 711
AcuI	CTGAAG	1 cut(s)	586
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	320, 457
AfiI	CCNNNNNNNGG	2 cut(s)	253, 540
AflIII	ACRYGT	1 cut(s)	723
AgeI	ACCGGT	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	292, 430, 482
AjnI	CCWGG	3 cut(s)	75, 379, 420
AluBI	AGCT	9 cut(s)	10, 49, 118, 332, 538, 780, 791, 860, 923
AluI	AGCT	9 cut(s)	10, 49, 118, 332, 538, 780, 791, 860, 923
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	62, 398, 667
AlwI	GGATC	5 cut(s)	193, 551, 601, 812, 825
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	6 cut(s)	18, 73, 312, 548, 687, 711
ApeKI	GCWGC	9 cut(s)	118, 521, 845, 854, 857, 860, 875, 884, 887
AsiGI	ACCGGT	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	268, 509
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	3 cut(s)	75, 314, 689
BamHI	GGATCC	1 cut(s)	817
BanII	GRGCYC	2 cut(s)	110, 334
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	3 cut(s)	72, 504, 592
Bbv12I	GWGCWC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	9 cut(s)	105, 508, 832, 841, 847, 862, 869, 871, 899
BccI	CCATC	1 cut(s)	571
BciT130I	CCWGG	3 cut(s)	77, 381, 422
BcoDI	GTCTC	3 cut(s)	62, 398, 667
BfaI	CTAG	1 cut(s)	964
BfmI	CTRYAG	4 cut(s)	52, 119, 855, 885
Bme1390I	CCNGG	3 cut(s)	77, 381, 422
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	109, 819, 871
BmrFI	CCNGG	3 cut(s)	77, 381, 422
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	3 cut(s)	72, 504, 592
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpmI	CTGGAG	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	924
BsaAI	YACGTR	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	15, 279, 840
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 540
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	77, 381, 422
BseDI	CCNNGG	3 cut(s)	15, 279, 840
BseGI	GGATG	2 cut(s)	126, 637
BseLI	CCNNNNNNNGG	2 cut(s)	253, 540
BseMII	CTCAG	4 cut(s)	128, 507, 618, 915
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	3 cut(s)	202, 320, 941
BseX3I	CGGCCG	1 cut(s)	711
BseXI	GCAGC	9 cut(s)	105, 508, 832, 841, 847, 862, 869, 871, 899
Bsh1285I	CGRYCG	1 cut(s)	714
BshFI	GGCC	6 cut(s)	20, 75, 314, 550, 689, 713
BshTI	ACCGGT	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	227, 388
BslI	CCNNNNNNNGG	2 cut(s)	253, 540
BsmAI	GTCTC	3 cut(s)	62, 398, 667
BsmFI	GGGAC	2 cut(s)	227, 388
BsnI	GGCC	6 cut(s)	20, 75, 314, 550, 689, 713
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	110, 334
Bsp143I	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
BspACI	CCGC	7 cut(s)	93, 130, 207, 710, 714, 873, 891
BspANI	GGCC	6 cut(s)	20, 75, 314, 550, 689, 713
BspCNI	CTCAG	4 cut(s)	127, 508, 619, 916
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	109, 819, 871
BspMAI	CTGCAG	4 cut(s)	56, 123, 859, 889
BspPI	GGATC	5 cut(s)	193, 551, 601, 812, 825
BspQI	GCTCTTC	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	15, 279, 840
BssMI	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	15, 279
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	3 cut(s)	77, 381, 422
Bst4CI	ACNGT	2 cut(s)	157, 460
Bst6I	CTCTTC	2 cut(s)	179, 909
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	8, 753, 921
BstDEI	CTNAG	4 cut(s)	114, 516, 627, 924
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	2 cut(s)	126, 637
BstKTI	GATC	7 cut(s)	33, 201, 273, 546, 596, 622, 820
BstMAI	GTCTC	3 cut(s)	62, 398, 667
BstMBI	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
BstMCI	CGRYCG	1 cut(s)	714
BstMWI	GCNNNNNNNGC	8 cut(s)	530, 851, 854, 860, 869, 881, 884, 890
BstNI	CCWGG	3 cut(s)	77, 381, 422
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	75, 379, 420
BstSFI	CTRYAG	4 cut(s)	52, 119, 855, 885
BstV1I	GCAGC	9 cut(s)	105, 508, 832, 841, 847, 862, 869, 871, 899
BstV2I	GAAGAC	3 cut(s)	72, 504, 592
BstX2I	RGATCY	3 cut(s)	198, 593, 817
BstYI	RGATCY	3 cut(s)	198, 593, 817
BstZI	CGGCCG	1 cut(s)	711
BsuRI	GGCC	6 cut(s)	20, 75, 314, 550, 689, 713
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	2 cut(s)	126, 637
BtsIMutI	CAGTG	2 cut(s)	307, 387
Cac8I	GCNNGC	3 cut(s)	8, 753, 921
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	639
CciNI	GCGGCCGC	1 cut(s)	711
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	319, 456
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	6 cut(s)	163, 178, 203, 640, 724, 943
CviQI	GTAC	2 cut(s)	319, 456
DdeI	CTNAG	4 cut(s)	114, 516, 627, 924
DpnI	GATC	7 cut(s)	32, 200, 272, 545, 595, 621, 819
DpnII	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
EaeI	YGGCCR	4 cut(s)	73, 312, 687, 711
EagI	CGGCCG	1 cut(s)	711
Eam1104I	CTCTTC	2 cut(s)	179, 909
EarI	CTCTTC	2 cut(s)	179, 909
Ecl136II	GAGCTC	1 cut(s)	332
EclXI	CGGCCG	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	15, 279
Eco24I	GRGCYC	2 cut(s)	110, 334
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	711
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	586
Eco88I	CYCGRG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	75, 379, 420
EcoT14I	CCWWGG	2 cut(s)	15, 279
EcoT38I	GRGCYC	2 cut(s)	110, 334
ErhI	CCWWGG	2 cut(s)	15, 279
FaeI	CATG	6 cut(s)	166, 181, 206, 643, 727, 946
FaqI	GGGAC	2 cut(s)	227, 388
FatI	CATG	6 cut(s)	162, 177, 202, 639, 723, 942
FblI	GTMKAC	1 cut(s)	139
FokI	GGATG	2 cut(s)	113, 644
FriOI	GRGCYC	2 cut(s)	110, 334
FspBI	CTAG	1 cut(s)	964
GsuI	CTGGAG	1 cut(s)	833
HaeIII	GGCC	6 cut(s)	20, 75, 314, 550, 689, 713
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	6 cut(s)	166, 181, 206, 643, 727, 946
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	2 cut(s)	268, 509
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	438, 517, 624
Hpy188III	TCNNGA	8 cut(s)	196, 395, 427, 490, 541, 574, 640, 812
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	2 cut(s)	44, 92
HpyAV	CCTTC	4 cut(s)	286, 487, 536, 904
HpyCH4III	ACNGT	2 cut(s)	157, 460
HpyCH4IV	ACGT	2 cut(s)	102, 142
HpyCH4V	TGCA	4 cut(s)	54, 121, 857, 887
HpyF10VI	GCNNNNNNNGC	8 cut(s)	530, 851, 854, 860, 869, 881, 884, 890
HpyF3I	CTNAG	4 cut(s)	114, 516, 627, 924
HpySE526I	ACGT	2 cut(s)	102, 142
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	6 cut(s)	166, 181, 206, 643, 727, 946
Kzo9I	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	6 cut(s)	113, 329, 337, 361, 853, 869
Lsp1109I	GCAGC	9 cut(s)	105, 508, 832, 841, 847, 862, 869, 871, 899
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	964
MaeII	ACGT	2 cut(s)	102, 142
MaeIII	GTNAC	4 cut(s)	218, 497, 670, 932
MalI	GATC	7 cut(s)	32, 200, 272, 545, 595, 621, 819
MboI	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
MboII	GAAGA	9 cut(s)	37, 40, 77, 196, 265, 409, 504, 592, 926
MfeI	CAATTG	2 cut(s)	705, 756
MflI	RGATCY	3 cut(s)	198, 593, 817
MhlI	GDGCHC	2 cut(s)	110, 334
MlsI	TGGCCA	3 cut(s)	75, 314, 689
MluCI	AATT	2 cut(s)	705, 756
MluNI	TGGCCA	3 cut(s)	75, 314, 689
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	3 cut(s)	244, 307, 461
Mox20I	TGGCCA	3 cut(s)	75, 314, 689
MscI	TGGCCA	3 cut(s)	75, 314, 689
MseI	TTAA	2 cut(s)	447, 645
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	3 cut(s)	75, 314, 689
MspA1I	CMGCKG	4 cut(s)	118, 860, 875, 923
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	77, 381, 422
MunI	CAATTG	2 cut(s)	705, 756
MvaI	CCWGG	3 cut(s)	77, 381, 422
MwoI	GCNNNNNNNGC	8 cut(s)	530, 851, 854, 860, 869, 881, 884, 890
NdeII	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
NlaIII	CATG	6 cut(s)	166, 181, 206, 643, 727, 946
NlaIV	GGNNCC	3 cut(s)	109, 819, 871
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	3 cut(s)	497, 670, 932
NotI	GCGGCCGC	1 cut(s)	711
NspI	RCATGY	1 cut(s)	727
PagI	TCATGA	1 cut(s)	639
PciI	ACATGT	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	797
PinAI	ACCGGT	1 cut(s)	215
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	79
PscI	ACATGT	1 cut(s)	723
Psp124BI	GAGCTC	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	75, 379, 420
PspGI	CCWGG	3 cut(s)	75, 379, 420
PspN4I	GGNNCC	3 cut(s)	109, 819, 871
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	4 cut(s)	56, 123, 859, 889
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	198, 593, 817
PsyI	GACNNNGTC	1 cut(s)	797
PvuII	CAGCTG	3 cut(s)	118, 860, 923
RsaI	GTAC	2 cut(s)	320, 457
RsaNI	GTAC	2 cut(s)	319, 456
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	2 cut(s)	447, 645
Sau3AI	GATC	7 cut(s)	30, 198, 270, 543, 593, 619, 817
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	77, 381, 422
SduI	GDGCHC	2 cut(s)	110, 334
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	4 cut(s)	52, 119, 855, 885
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	705, 756
SsiI	CCGC	7 cut(s)	93, 130, 207, 710, 714, 873, 891
SspMI	CTAG	1 cut(s)	964
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	75, 379, 420
StyI	CCWWGG	2 cut(s)	15, 279
TaaI	ACNGT	2 cut(s)	157, 460
TaiI	ACGT	2 cut(s)	105, 145
TaqI	TCGA	3 cut(s)	152, 396, 960
TasI	AATT	2 cut(s)	705, 756
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	6 cut(s)	95, 209, 713, 716, 875, 893
Tru1I	TTAA	2 cut(s)	447, 645
Tru9I	TTAA	2 cut(s)	447, 645
TscAI	CASTG	2 cut(s)	307, 394
TseFI	GTSAC	3 cut(s)	497, 670, 932
TseI	GCWGC	9 cut(s)	118, 521, 845, 854, 857, 860, 875, 884, 887
Tsp45I	GTSAC	3 cut(s)	497, 670, 932
TspDTI	ATGAA	2 cut(s)	197, 684
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	2 cut(s)	307, 394
Tth111I	GACNNNGTC	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	79
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.