Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

3770882 .. 3772985

Gene Structure 2104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGAAAGCTCTCCAAAGCCGAGAAGAAGATCAACTACGATGCCAAGCTCTGCAAGCACCTCGACGAGTACGGCCAGATTCTCATCGTCGCCGCCGATAACGTCGGCTCGAATCAGCTCCAGAACATCCGTCAGGGTTTACGTGGCCACTCGGTCGTTCTTATGGGGAAGAACACCATGATGAAGAGGTCCATCAAGATCCATGCAGAGAAGACCCGTAACGATGCTATTCTCAACCTCGTCCCCCTCCTCGTGGGAAATGTGGGTCTGATCTTCACCAAGGGTGATTTGAAAGAAGTGAAAGAAGAGGTTGCTAAGTACAAGGTTGGGGCTCCTGCTCGTGTGGGATTGGTTGCTCCAGTTGATGTTGTTGTTCCTCCGGGCAACACAGGACTCGATCCATCTCAGACCTCTTTCTTCCAGGTGCTTAATATTCCAACCAAGATTAACAAGGGAACTGTGGAAATCATAACCCCTGTTGAACTTATTAAGAAGGGTGACAAGGTTGGGTCTTCCGAGGCTGCATTGCTTTCTAAGCTTGCGATTAGGCCATTCTCTTATGGTCTTGTTGTTCAGATGGTGTATGACAATGGTTCTGTCTTCAGCCCAGAGGTGCTTGATCTTACTGAGGAAGATCTCGCCGTCAAGTTTGCTTCTAGTGCCTCCAATGTCGCAGCATTGGCATTGGCCATTTCGTACCCAACAGTTGTAGCTGCACCACATATGTTCCTCAATGCCTACAAGAACGTCTTGGCAGTTGCTGTTGCTACCGAGTTTTCCTTCCCTCAAGCAGATAAGGTCAAGGAGTATCTCAAGGATCCTTCCAAGTTTGCTGCTTTGGCTGCTCCTGCAGCTGCTACAGGCGGCGCTGCTGCCCCTGCGGCGGCTGCTAAGGAAGCGAAGAAGGAAGAGCCTGCTGAGGAATCAGATGAGGACATGGGTCTCGGGTTGTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

320

Amino Acids

33.87

Weight (kDa)

6.93

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	6 - 107	7.2e-18	Ribosomal protein L10
RL10P_insert	PF17777	113 - 182	3.9e-21	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	234 - 318	6.9e-21	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	93, 864, 881, 884
AclWI	GGATC	4 cut(s)	193, 392, 812, 825
AcoI	YGGCCR	3 cut(s)	73, 145, 687
AcuI	CTGAAG	1 cut(s)	586
AfaI	GTAC	3 cut(s)	71, 320, 698
AfiI	CCNNNNNNNGG	2 cut(s)	253, 883
AgsI	TTSAA	2 cut(s)	292, 482
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	6 cut(s)	10, 49, 118, 538, 713, 854
AluI	AGCT	6 cut(s)	10, 49, 118, 538, 713, 854
Alw26I	GTCTC	1 cut(s)	947
AlwI	GGATC	4 cut(s)	193, 392, 812, 825
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	4 cut(s)	73, 145, 548, 687
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	3 cut(s)	268, 296, 509
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	1 cut(s)	189
BalI	TGGCCA	2 cut(s)	147, 689
BamHI	GGATCC	1 cut(s)	817
BanII	GRGCYC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	2 cut(s)	251, 339
BbsI	GAAGAC	3 cut(s)	218, 504, 592
BbvCI	CCTCAGC	1 cut(s)	918
BccI	CCATC	3 cut(s)	200, 409, 571
BceAI	ACGGC	2 cut(s)	88, 626
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	422
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	947
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	2 cut(s)	849, 858
BfoI	RGCGCY	1 cut(s)	870
BglI	GCCNNNNNGGC	1 cut(s)	881
BglII	AGATCT	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	381, 422
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	333, 819
BmrFI	CCNGG	2 cut(s)	381, 422
BmsI	GCATC	2 cut(s)	31, 214
BoxI	GACNNNNGTC	1 cut(s)	939
BpiI	GAAGAC	3 cut(s)	218, 504, 592
BpmI	CTGGAG	2 cut(s)	104, 342
Bpu10I	CCTNAGC	2 cut(s)	891, 918
BpuEI	CTTGAG	2 cut(s)	771, 797
BpuMI	CCSGG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	2 cut(s)	279, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 883
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	524
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	279, 516
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	253, 883
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	3 cut(s)	419, 618, 909
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	699
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	75, 147, 550, 689
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	253, 883
BsmAI	GTCTC	1 cut(s)	947
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	75, 147, 550, 689
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
BspACI	CCGC	4 cut(s)	93, 864, 881, 884
BspANI	GGCC	4 cut(s)	75, 147, 550, 689
BspCNI	CTCAG	3 cut(s)	418, 619, 910
BspLI	GGNNCC	2 cut(s)	333, 819
BspMAI	CTGCAG	1 cut(s)	853
BspPI	GGATC	4 cut(s)	193, 392, 812, 825
BspQI	GCTCTTC	1 cut(s)	903
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	279, 516
BssMI	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
BssSI	CACGAG	2 cut(s)	251, 339
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	2 cut(s)	251, 339
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	460, 706
Bst6I	CTCTTC	3 cut(s)	179, 300, 903
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	56, 540, 915
BstDEI	CTNAG	6 cut(s)	315, 405, 534, 627, 891, 918
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	7 cut(s)	33, 201, 273, 400, 622, 637, 820
BstMAI	GTCTC	1 cut(s)	947
BstMBI	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
BstMCI	CGRYCG	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	422
BstPAI	GACNNNNGTC	1 cut(s)	939
BstSCI	CCNGG	2 cut(s)	379, 420
BstSFI	CTRYAG	2 cut(s)	849, 858
BstV2I	GAAGAC	3 cut(s)	218, 504, 592
BstX2I	RGATCY	3 cut(s)	198, 634, 817
BstYI	RGATCY	3 cut(s)	198, 634, 817
BsuRI	GGCC	4 cut(s)	75, 147, 550, 689
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	56, 540, 915
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	869
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	3 cut(s)	70, 319, 697
CviAII	CATG	3 cut(s)	178, 203, 937
CviQI	GTAC	3 cut(s)	70, 319, 697
DdeI	CTNAG	6 cut(s)	315, 405, 534, 627, 891, 918
DpnI	GATC	7 cut(s)	32, 200, 272, 399, 621, 636, 819
DpnII	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
EaeI	YGGCCR	3 cut(s)	73, 145, 687
Eam1104I	CTCTTC	3 cut(s)	179, 300, 903
EarI	CTCTTC	3 cut(s)	179, 300, 903
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	586
Eco88I	CYCGRG	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	3 cut(s)	181, 206, 940
FaiI	YATR	9 cut(s)	164, 179, 204, 470, 561, 585, 723, 725, 938
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	177, 202, 936
FauNDI	CATATG	1 cut(s)	723
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	868
GsuI	CTGGAG	2 cut(s)	104, 342
HaeII	RGCGCY	1 cut(s)	870
HaeIII	GGCC	4 cut(s)	75, 147, 550, 689
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	869
Hin1II	CATG	3 cut(s)	181, 206, 940
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	79, 112, 393, 923
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	268, 296, 509
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	5 cut(s)	270, 408, 517, 576, 928
Hpy188III	TCNNGA	2 cut(s)	121, 196
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	3 cut(s)	68, 92, 107
HpyAV	CCTTC	4 cut(s)	487, 790, 831, 898
HpyCH4III	ACNGT	2 cut(s)	460, 706
HpyCH4IV	ACGT	3 cut(s)	102, 142, 747
HpyCH4V	TGCA	5 cut(s)	54, 206, 524, 716, 851
HpyF3I	CTNAG	6 cut(s)	315, 405, 534, 627, 891, 918
HpySE526I	ACGT	3 cut(s)	102, 142, 747
Hsp92II	CATG	3 cut(s)	181, 206, 940
HspAI	GCGC	1 cut(s)	867
Kzo9I	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	4 cut(s)	123, 337, 361, 850
LweI	GCATC	2 cut(s)	31, 214
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	3 cut(s)	102, 142, 747
MaeIII	GTNAC	2 cut(s)	218, 497
MalI	GATC	7 cut(s)	32, 200, 272, 399, 621, 636, 819
MboI	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
MflI	RGATCY	3 cut(s)	198, 634, 817
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	2 cut(s)	147, 689
MluNI	TGGCCA	2 cut(s)	147, 689
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	461
Mox20I	TGGCCA	2 cut(s)	147, 689
MscI	TGGCCA	2 cut(s)	147, 689
MseI	TTAA	4 cut(s)	429, 447, 489, 958
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	2 cut(s)	147, 689
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	381, 422
MvaI	CCWGG	1 cut(s)	422
NciI	CCSGG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
NlaIII	CATG	3 cut(s)	181, 206, 940
NlaIV	GGNNCC	2 cut(s)	333, 819
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 951
PfeI	GAWTC	3 cut(s)	79, 112, 923
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	143
PshAI	GACNNNNGTC	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	333, 819
PspPI	GGNCC	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	3 cut(s)	198, 634, 817
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	3 cut(s)	71, 320, 698
RsaNI	GTAC	3 cut(s)	70, 319, 697
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	4 cut(s)	429, 447, 489, 958
Sau3AI	GATC	7 cut(s)	30, 198, 270, 397, 619, 634, 817
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	381, 422
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	31, 214
SfcI	CTRYAG	2 cut(s)	849, 858
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	786, 812
SmoI	CTYRAG	2 cut(s)	786, 812
SsiI	CCGC	4 cut(s)	93, 864, 881, 884
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	379, 420
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	460, 706
TaiI	ACGT	3 cut(s)	105, 145, 750
TaqI	TCGA	4 cut(s)	63, 110, 396, 954
TaqII	GACCGA	1 cut(s)	142
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	4 cut(s)	95, 867, 884, 887
TfiI	GAWTC	3 cut(s)	79, 112, 923
Tru1I	TTAA	4 cut(s)	429, 447, 489, 958
Tru9I	TTAA	4 cut(s)	429, 447, 489, 958
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	189
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.