Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005802.1

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

132175 .. 134004

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005802.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgggaaagctctccaaggccgagaagaagatcaactacgatgccaagctctgccggctcctcgacgagtacgcccaggttctcatcgtcgccgccgataacgtcggctccaatcagctccagaacatccgccagggcttacgcggccactccatcgttctcatggggaagaacaccatgatgaagaggtccatcaagattcatgctgaaaagaccggaaacaatgctgttctcaacctcgtccccctcctcgtgggtaatgtgggtttgatcttcaccaagggtgatttgaaggaagtgaaagaagaggttgccaagtacaaggttggggcccctgctcgtgtgggtttggttgctccagttgatgttgttgttcctcctggcaacactggactcgacccatcccagacctctttcttccaggtgcttaacattccaactaagattaacaagggaactgtggaaatcattacccctgttgaacttattaagaagggtgacaaggttgggtcttctgagtctgctcttcttgccaagctcgggatcaggccattctcttatggtcttgttgtccagatggtgtatgaaaatggttctgttttcagcccagaggtgcttgatcttactgaggatgatctcgcgttgacgtttgcttctaatgtctccaatgtctcagcattggcattggctatttcctacccaacaattgcagctgctccacatatggtcctcaatgcctacaagaatgtgttggcagttgctgtggctactgagtattccttccctcaagcagataaggtcaaggagtatctgaaggatcctaccaagtttgctgctttggctgcccctgcccctgcagctgctgctgctgcccctgctgcggctgctaaggtggaagcgaagaaggaagagccttctgaggagtcagatgaggacatgggccttggtttattcgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

319

Amino Acids

33.86

Weight (kDa)

6.37

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	144, 641
AciI	CCGC	4 cut(s)	93, 130, 144, 881
AclWI	GGATC	3 cut(s)	551, 812, 825
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	2 cut(s)	71, 320
AfiI	CCNNNNNNNGG	3 cut(s)	253, 540, 880
AgsI	TTSAA	2 cut(s)	292, 482
AjnI	CCWGG	4 cut(s)	75, 132, 379, 420
AluBI	AGCT	6 cut(s)	10, 49, 118, 538, 713, 860
AluI	AGCT	6 cut(s)	10, 49, 118, 538, 713, 860
Alw26I	GTCTC	2 cut(s)	667, 676
AlwI	GGATC	3 cut(s)	551, 812, 825
AlwNI	CAGNNNCTG	2 cut(s)	761, 863
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	5 cut(s)	18, 145, 330, 548, 940
ApaI	GGGCCC	1 cut(s)	334
AspS9I	GGNCC	5 cut(s)	189, 330, 331, 727, 940
AsuHPI	GGTGA	3 cut(s)	268, 296, 509
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	189, 727
BaeGI	GKGCMC	1 cut(s)	334
BamHI	GGATCC	1 cut(s)	817
BanII	GRGCYC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	2 cut(s)	251, 339
BbsI	GAAGAC	1 cut(s)	504
BccI	CCATC	4 cut(s)	161, 200, 409, 571
BciT130I	CCWGG	4 cut(s)	77, 134, 381, 422
BcoDI	GTCTC	2 cut(s)	667, 676
BfmI	CTRYAG	1 cut(s)	855
Bme1390I	CCNGG	4 cut(s)	77, 134, 381, 422
Bme18I	GGWCC	2 cut(s)	189, 727
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	5 cut(s)	189, 330, 331, 727, 940
BmiI	GGNNCC	6 cut(s)	59, 109, 331, 332, 333, 819
BmrFI	CCNGG	4 cut(s)	77, 134, 381, 422
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	104, 342
Bpu10I	CCTNAGC	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	771
BsaJI	CCNNGG	5 cut(s)	15, 75, 133, 279, 943
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 540, 880
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	359, 394
BseBI	CCWGG	4 cut(s)	77, 134, 381, 422
BseDI	CCNNGG	5 cut(s)	15, 75, 133, 279, 943
BseGI	GGATG	3 cut(s)	126, 401, 637
BseLI	CCNNNNNNNGG	3 cut(s)	253, 540, 880
BseMII	CTCAG	5 cut(s)	507, 618, 687, 762, 909
BseNI	ACTGG	2 cut(s)	359, 394
BseRI	GAGGAG	3 cut(s)	50, 239, 935
BseSI	GKGCMC	1 cut(s)	334
Bsh1236I	CGCG	2 cut(s)	144, 641
BshFI	GGCC	5 cut(s)	20, 147, 332, 550, 942
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	55, 216
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	253, 540, 880
BsmAI	GTCTC	2 cut(s)	667, 676
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	5 cut(s)	20, 147, 332, 550, 942
BsoBI	CYCGRG	1 cut(s)	539
Bsp120I	GGGCCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
BspACI	CCGC	4 cut(s)	93, 130, 144, 881
BspANI	GGCC	5 cut(s)	20, 147, 332, 550, 942
BspCNI	CTCAG	5 cut(s)	508, 619, 686, 763, 910
BspFNI	CGCG	2 cut(s)	144, 641
BspLI	GGNNCC	6 cut(s)	59, 109, 331, 332, 333, 819
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	3 cut(s)	551, 812, 825
BspQI	GCTCTTC	2 cut(s)	531, 903
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	359, 394
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	5 cut(s)	15, 75, 133, 279, 943
BssMI	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
BssSI	CACGAG	2 cut(s)	251, 339
BssT1I	CCWWGG	3 cut(s)	15, 279, 943
Bst2BI	CACGAG	2 cut(s)	251, 339
Bst2UI	CCWGG	4 cut(s)	77, 134, 381, 422
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	4 cut(s)	179, 300, 531, 903
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	7 cut(s)	441, 516, 627, 673, 771, 888, 918
BstF5I	GGATG	3 cut(s)	126, 401, 637
BstFNI	CGCG	2 cut(s)	144, 641
BstKTI	GATC	6 cut(s)	33, 273, 546, 622, 637, 820
BstMAI	GTCTC	2 cut(s)	667, 676
BstMBI	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
BstNI	CCWGG	4 cut(s)	77, 134, 381, 422
BstSCI	CCNGG	4 cut(s)	75, 132, 379, 420
BstSFI	CTRYAG	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	2 cut(s)	144, 641
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	5 cut(s)	20, 147, 332, 550, 942
BtsCI	GGATG	3 cut(s)	126, 401, 637
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	2 cut(s)	761, 863
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	5 cut(s)	189, 330, 331, 727, 940
Csp6I	GTAC	2 cut(s)	70, 319
CviAII	CATG	4 cut(s)	163, 178, 203, 937
CviQI	GTAC	2 cut(s)	70, 319
DdeI	CTNAG	7 cut(s)	441, 516, 627, 673, 771, 888, 918
DpnI	GATC	6 cut(s)	32, 272, 545, 621, 636, 819
DpnII	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	4 cut(s)	179, 300, 531, 903
EarI	CTCTTC	4 cut(s)	179, 300, 531, 903
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	3 cut(s)	15, 279, 943
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	189, 727
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	330, 331
EcoRII	CCWGG	4 cut(s)	75, 132, 379, 420
EcoT14I	CCWWGG	3 cut(s)	15, 279, 943
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	3 cut(s)	15, 279, 943
FaeI	CATG	4 cut(s)	166, 181, 206, 940
FaiI	YATR	8 cut(s)	164, 179, 204, 561, 585, 723, 725, 938
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	162, 177, 202, 936
FauNDI	CATATG	1 cut(s)	723
FokI	GGATG	3 cut(s)	113, 388, 644
FriOI	GRGCYC	1 cut(s)	334
GsuI	CTGGAG	2 cut(s)	104, 342
HaeIII	GGCC	5 cut(s)	20, 147, 332, 550, 942
HapII	CCGG	2 cut(s)	55, 216
Hin1II	CATG	4 cut(s)	166, 181, 206, 940
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	4 cut(s)	199, 393, 518, 923
HpaII	CCGG	2 cut(s)	55, 216
HphI	GGTGA	3 cut(s)	268, 296, 509
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	4 cut(s)	517, 813, 919, 928
Hpy188III	TCNNGA	4 cut(s)	121, 196, 541, 574
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	3 cut(s)	68, 92, 107
HpyAV	CCTTC	6 cut(s)	286, 487, 790, 808, 898, 924
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	102, 647
HpyCH4V	TGCA	2 cut(s)	710, 857
HpyF3I	CTNAG	7 cut(s)	441, 516, 627, 673, 771, 888, 918
HpySE526I	ACGT	2 cut(s)	102, 647
Hsp92II	CATG	4 cut(s)	166, 181, 206, 940
KroI	GCCGGC	1 cut(s)	54
KroNI	GCCGGC	1 cut(s)	56
Kzo9I	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
LguI	GCTCTTC	2 cut(s)	531, 903
LmnI	GCTCC	5 cut(s)	63, 113, 123, 361, 721
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	2 cut(s)	102, 647
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	6 cut(s)	32, 272, 545, 621, 636, 819
MboI	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	705
MlyI	GAGTC	3 cut(s)	387, 527, 932
MmeI	TCCRAC	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	54
MseI	TTAA	4 cut(s)	429, 447, 489, 958
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	713, 860
MspI	CCGG	2 cut(s)	55, 216
MspR9I	CCNGG	4 cut(s)	77, 134, 381, 422
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	4 cut(s)	77, 134, 381, 422
MvnI	CGCG	2 cut(s)	144, 641
NaeI	GCCGGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
NgoMIV	GCCGGC	1 cut(s)	54
NlaIII	CATG	4 cut(s)	166, 181, 206, 940
NlaIV	GGNNCC	6 cut(s)	59, 109, 331, 332, 333, 819
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	497
PciSI	GCTCTTC	2 cut(s)	531, 903
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	199
PleI	GAGTC	3 cut(s)	387, 526, 931
PpsI	GAGTC	3 cut(s)	387, 526, 931
Psp6I	CCWGG	4 cut(s)	75, 132, 379, 420
PspGI	CCWGG	4 cut(s)	75, 132, 379, 420
PspN4I	GGNNCC	6 cut(s)	59, 109, 331, 332, 333, 819
PspOMI	GGGCCC	1 cut(s)	330
PspPI	GGNCC	5 cut(s)	189, 330, 331, 727, 940
PstI	CTGCAG	1 cut(s)	859
PstNI	CAGNNNCTG	2 cut(s)	761, 863
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	2 cut(s)	713, 860
RsaI	GTAC	2 cut(s)	71, 320
RsaNI	GTAC	2 cut(s)	70, 319
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	2 cut(s)	531, 903
SaqAI	TTAA	4 cut(s)	429, 447, 489, 958
Sau3AI	GATC	6 cut(s)	30, 270, 543, 619, 634, 817
Sau96I	GGNCC	5 cut(s)	189, 330, 331, 727, 940
SchI	GAGTC	3 cut(s)	387, 527, 932
ScrFI	CCNGG	4 cut(s)	77, 134, 381, 422
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	855
SinI	GGWCC	2 cut(s)	189, 727
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
Sse9I	AATT	1 cut(s)	705
SsiI	CCGC	4 cut(s)	93, 130, 144, 881
StyD4I	CCNGG	4 cut(s)	75, 132, 379, 420
StyI	CCWWGG	3 cut(s)	15, 279, 943
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	2 cut(s)	105, 650
TaqI	TCGA	3 cut(s)	63, 396, 954
TasI	AATT	1 cut(s)	705
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	3 cut(s)	95, 147, 884
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	4 cut(s)	429, 447, 489, 958
Tru9I	TTAA	4 cut(s)	429, 447, 489, 958
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	191, 197, 600
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	189, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.