Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

10757268 .. 10759103

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGAAAACTCTCCAAGGCCGAGAAGAAGATCAACTACGATGCCAAGCTCTGCCGGCTCCTCGACGACTACGCCCAGGTTCTCATCGTCGCCGCCGATAACGTCGGCTCCAATCAGCTCCAGAACATCCGCCAGGGCTTACGCGGCCACTCCATCGTTCTCATGGGGAAGAACACCATGATGAAGAGGTCCATCAAGATTCATGCTGAAAAGACCGGAAACAATGCTGTTCTCAACCTCGTCCCCCTCCTCGTGGGTAATGTAGGTTTGATCTTCACCAAGGGTGATTTGAAGGAAGTGAAAGAAGAGGTTGCCAAGTACAAGAAATTTGGAAATGAATGTGATAAGGTTCTTAGTTGTGATACTCTGAAGCTATCCGAGGCTATAGATGTTTATGAAAGATGCTGTGTTGGGGCCCCTGCTCGTGTGGGTTTGGTTGCTCCAGTTGATGTTGTTGTTCCTCCTGGCAACACTGGACTCGACCCATCCCAGACCTCTTTCTTCCAGGTGCTTAACATTCCAACTAAGATTAACAAGGGAACTGTGGAAATCATTACCCCTGTTGAACTTATTAAGAAGGGTGACAAGGTTGGGTCTTCTGAGTCTGCTCTGCTTGCCAAGCTCGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGAAAATGGTTCTGTTTTCAGCCCAGAGGTGCTTGATCTTACTGAGGATGATCTCGCGTTGGCGTTTGCTTCTAATGTCTCCAATGTCGCAGCATTGGCATTGGCTATTTCCTACCCAACAATTGCAGCTGCTCCACATATGTTCCTCAATGCCTACAAGAATGTGTTGGCAGTTGCTGTGGCTACTGAGTATTCCTTCCCTCAAGCAGATAAGGTCAAGGAGTATCTGAAGGATCCTACCAAGTTTGCTGCTTTGGCTGCCCCTGCCCCTGCAGCTGCTGCTGCTGCCCCTGCTGCGGCTGCTAAGGTGGAAGCGAAGAAGGAAGAGCCTTCTGAGGAGTCAGATGAGGACATGGGTCTTGGTTTATTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

347

Amino Acids

37.01

Weight (kDa)

5.81

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	6 - 108	9.6e-18	Ribosomal protein L10
RL10P_insert	PF17777	141 - 210	9.5e-21	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	261 - 346	2.3e-22	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	144, 725
AciI	CCGC	4 cut(s)	93, 130, 144, 965
AclWI	GGATC	3 cut(s)	635, 896, 909
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	389, 917
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	253, 624, 964
AgsI	TTSAA	2 cut(s)	292, 566
AjnI	CCWGG	4 cut(s)	75, 132, 463, 504
AluBI	AGCT	6 cut(s)	49, 118, 373, 622, 797, 944
AluI	AGCT	6 cut(s)	49, 118, 373, 622, 797, 944
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	3 cut(s)	635, 896, 909
AlwNI	CAGNNNCTG	2 cut(s)	845, 947
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	4 cut(s)	18, 145, 414, 632
ApaI	GGGCCC	1 cut(s)	418
ApoI	RAATTY	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	189, 414, 415
AsuHPI	GGTGA	3 cut(s)	268, 296, 593
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	418
BamHI	GGATCC	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	418
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BauI	CACGAG	2 cut(s)	251, 423
BbsI	GAAGAC	1 cut(s)	588
BccI	CCATC	4 cut(s)	161, 200, 493, 655
BciT130I	CCWGG	4 cut(s)	77, 134, 465, 506
BcoDI	GTCTC	1 cut(s)	751
BfmI	CTRYAG	2 cut(s)	384, 939
Bme1390I	CCNGG	4 cut(s)	77, 134, 465, 506
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	189, 414, 415
BmiI	GGNNCC	6 cut(s)	59, 109, 415, 416, 417, 903
BmrFI	CCNGG	4 cut(s)	77, 134, 465, 506
BmsI	GCATC	2 cut(s)	31, 392
BoxI	GACNNNNGTC	1 cut(s)	1023
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	2 cut(s)	104, 426
Bpu10I	CCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	855
BsaJI	CCNNGG	5 cut(s)	15, 75, 133, 279, 378
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 624, 964
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	443, 478
BseBI	CCWGG	4 cut(s)	77, 134, 465, 506
BseDI	CCNNGG	5 cut(s)	15, 75, 133, 279, 378
BseGI	GGATG	3 cut(s)	126, 485, 721
BseLI	CCNNNNNNNGG	3 cut(s)	253, 624, 964
BseMII	CTCAG	4 cut(s)	591, 702, 846, 993
BseNI	ACTGG	2 cut(s)	443, 478
BseRI	GAGGAG	3 cut(s)	50, 239, 1019
BseSI	GKGCMC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	144, 725
BshFI	GGCC	4 cut(s)	20, 147, 416, 634
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	2 cut(s)	55, 216
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	253, 624, 964
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	20, 147, 416, 634
BsoBI	CYCGRG	1 cut(s)	623
Bsp120I	GGGCCC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
BspACI	CCGC	4 cut(s)	93, 130, 144, 965
BspANI	GGCC	4 cut(s)	20, 147, 416, 634
BspCNI	CTCAG	4 cut(s)	592, 703, 847, 994
BspFNI	CGCG	2 cut(s)	144, 725
BspLI	GGNNCC	6 cut(s)	59, 109, 415, 416, 417, 903
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	3 cut(s)	635, 896, 909
BspQI	GCTCTTC	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	443, 478
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	5 cut(s)	15, 75, 133, 279, 378
BssMI	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
BssSI	CACGAG	2 cut(s)	251, 423
BssT1I	CCWWGG	2 cut(s)	15, 279
Bst2BI	CACGAG	2 cut(s)	251, 423
Bst2UI	CCWGG	4 cut(s)	77, 134, 465, 506
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	3 cut(s)	179, 300, 987
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	56, 615
BstDEI	CTNAG	7 cut(s)	353, 525, 600, 711, 855, 972, 1002
BstF5I	GGATG	3 cut(s)	126, 485, 721
BstFNI	CGCG	2 cut(s)	144, 725
BstKTI	GATC	6 cut(s)	33, 273, 630, 706, 721, 904
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
BstNI	CCWGG	4 cut(s)	77, 134, 465, 506
BstPAI	GACNNNNGTC	1 cut(s)	1023
BstSCI	CCNGG	4 cut(s)	75, 132, 463, 504
BstSFI	CTRYAG	2 cut(s)	384, 939
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	2 cut(s)	144, 725
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	4 cut(s)	20, 147, 416, 634
BtsCI	GGATG	3 cut(s)	126, 485, 721
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	56, 615
CaiI	CAGNNNCTG	2 cut(s)	845, 947
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	189, 414, 415
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	163, 178, 203, 1021
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	7 cut(s)	353, 525, 600, 711, 855, 972, 1002
DpnI	GATC	6 cut(s)	32, 272, 629, 705, 720, 903
DpnII	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	3 cut(s)	179, 300, 987
EarI	CTCTTC	3 cut(s)	179, 300, 987
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	15, 279
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	389, 917
Eco88I	CYCGRG	1 cut(s)	623
EcoO109I	RGGNCCY	2 cut(s)	414, 415
EcoRII	CCWGG	4 cut(s)	75, 132, 463, 504
EcoT14I	CCWWGG	2 cut(s)	15, 279
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	15, 279
FaeI	CATG	4 cut(s)	166, 181, 206, 1024
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	162, 177, 202, 1020
FauNDI	CATATG	1 cut(s)	807
FokI	GGATG	3 cut(s)	113, 472, 728
FriOI	GRGCYC	1 cut(s)	418
GsuI	CTGGAG	2 cut(s)	104, 426
HaeIII	GGCC	4 cut(s)	20, 147, 416, 634
HapII	CCGG	2 cut(s)	55, 216
Hin1II	CATG	4 cut(s)	166, 181, 206, 1024
HinfI	GANTC	4 cut(s)	199, 477, 602, 1007
HpaII	CCGG	2 cut(s)	55, 216
HphI	GGTGA	3 cut(s)	268, 296, 593
Hpy188I	TCNGA	6 cut(s)	369, 379, 601, 897, 1003, 1012
Hpy188III	TCNNGA	4 cut(s)	121, 196, 625, 658
Hpy99I	CGWCG	3 cut(s)	68, 92, 107
HpyAV	CCTTC	6 cut(s)	286, 571, 874, 892, 982, 1008
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	794, 941
HpyF3I	CTNAG	7 cut(s)	353, 525, 600, 711, 855, 972, 1002
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	166, 181, 206, 1024
KroI	GCCGGC	1 cut(s)	54
KroNI	GCCGGC	1 cut(s)	56
Kzo9I	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	5 cut(s)	63, 113, 123, 445, 805
LweI	GCATC	2 cut(s)	31, 392
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	6 cut(s)	32, 272, 629, 705, 720, 903
MboI	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	2 cut(s)	326, 789
MlyI	GAGTC	3 cut(s)	471, 611, 1016
MmeI	TCCRAC	1 cut(s)	545
MroNI	GCCGGC	1 cut(s)	54
MseI	TTAA	4 cut(s)	513, 531, 573, 1042
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	797, 944
MspI	CCGG	2 cut(s)	55, 216
MspR9I	CCNGG	4 cut(s)	77, 134, 465, 506
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	4 cut(s)	77, 134, 465, 506
MvnI	CGCG	2 cut(s)	144, 725
NaeI	GCCGGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
NgoMIV	GCCGGC	1 cut(s)	54
NlaIII	CATG	4 cut(s)	166, 181, 206, 1024
NlaIV	GGNNCC	6 cut(s)	59, 109, 415, 416, 417, 903
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	199
PleI	GAGTC	3 cut(s)	471, 610, 1015
PpsI	GAGTC	3 cut(s)	471, 610, 1015
PshAI	GACNNNNGTC	1 cut(s)	1023
Psp6I	CCWGG	4 cut(s)	75, 132, 463, 504
PspGI	CCWGG	4 cut(s)	75, 132, 463, 504
PspN4I	GGNNCC	6 cut(s)	59, 109, 415, 416, 417, 903
PspOMI	GGGCCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	189, 414, 415
PstI	CTGCAG	1 cut(s)	943
PstNI	CAGNNNCTG	2 cut(s)	845, 947
PsuI	RGATCY	1 cut(s)	901
PvuII	CAGCTG	2 cut(s)	797, 944
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	4 cut(s)	513, 531, 573, 1042
Sau3AI	GATC	6 cut(s)	30, 270, 627, 703, 718, 901
Sau96I	GGNCC	3 cut(s)	189, 414, 415
SchI	GAGTC	3 cut(s)	471, 611, 1016
ScrFI	CCNGG	4 cut(s)	77, 134, 465, 506
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	31, 392
SfcI	CTRYAG	2 cut(s)	384, 939
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
Sse9I	AATT	2 cut(s)	326, 789
SsiI	CCGC	4 cut(s)	93, 130, 144, 965
StyD4I	CCNGG	4 cut(s)	75, 132, 463, 504
StyI	CCWWGG	2 cut(s)	15, 279
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	63, 480, 1038
TasI	AATT	2 cut(s)	326, 789
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	3 cut(s)	95, 147, 968
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	4 cut(s)	513, 531, 573, 1042
Tru9I	TTAA	4 cut(s)	513, 531, 573, 1042
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	5 cut(s)	191, 197, 351, 411, 684
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.