Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004378

Physical Location & Seq

Genomic Coordinates Reverse (-)

25762867 .. 25766020

Gene Structure 3154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1148900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCCCCAAACCCTCGAAGGCTGACAAGAAGATCGCCTACGATTCCAAGCTCTGCTCCCTCCTCGACGAGTATGGCCAGGTCCTCATCGTCGCCGCCGACAACGTCGGCTCCAAGCAGCTCCAGAACATCCGCAAGGGGCTGCGTGGCGACTCCGTCGTTCTGATGGGGAAGAACACAATGATGAAGCGCTCCGTCAGGATCCATGCGGAGAAGACCGGCAACAGTGCCTACCTCAACCTCGTCCCCCTCCTTGTGGGCAACGTCGGTCTGATTTTCACCAAGGGTGACCTGAAGGAAGTGAGCGAAGAGGTTGCCAAGTACAAGGTTGGAGCCCCTGCTCGTGTTGGTTTAGTTGCTCCAATTGATGTGGTGGTTCCTCCTGGCAACACTGGTCTTGACCCATCTCAGACCTCTTTCTTCCAGGTTCTCAACATCCCCACCAAGATTAACAAGGGAACTGTCGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGAGACAAGGTTGGCTCTTCTGAGGCTGCCCTCCTTGCAAAGCTTGGAATCAGGCCATTCTCATACGGTCTTGTTGTTGAGATGGTGTATGACAATGGTTCCGTCTTCAGCCCTGAGGTGCTTGATCTGACTGAGGATGATCTCATGGTGAAGTTTGCTTCTGGTGTTTCAATGGTCACTTCATTGGCGTTGGCTGTCTCATACCCCACCCTTGCAGCTGCACCACACATGTTCCTCAATGCCTACAAGAATGTTTTGGCAGTTTCTATTGCCACCGAATATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAAGTTTGCCGTTGCTGCAGCCCCTGTTGCTGCTGCTGCTTCCGGAGGTGCTCCAGCAGCTGCCAAGGAGGAAGAGAAGAAGCCTGAGCCGGAAGAGGAATCCGACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006950 GO:0008150 GO:0009628 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0034059 GO:0036293 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0050896 GO:0070482 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s Ribosomal_L10

Protein Analysis

322

Amino Acids

34.18

Weight (kDa)

5.36

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L10	PF00466	8 - 108	5.2e-17	Ribosomal protein L10
RL10P_insert	PF17777	114 - 183	5.4e-22	Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s	PF00428	234 - 319	3.4e-23	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40010 AT3G09200 AT3G09200 AT3G11250
fragaria_vesca	FvH4_4g04410 FvH4_5g34410 FvH4_7g24170 FvH4_7g24570
malus_domestica	MD01G1148900.v1.1 MD07G1215800.v1.1
prunus_persica	Prupe.1G173900_v2.0.a1
pyrus_communis	pycom01g16730
rosa_chinensis	RchiOBHm_Chr1g0369751 RchiOBHm_Chr4g0394971
rosa_laevigata	RLG00000009654 RLG00000027110
rosa_multiflora	Rmu_sc0001154.1_g000029 Rmu_sc0005802.1_g000028
rosa_roxburghii	Rroxscaffold_4G00287420 Rroxscaffold_5G00339940
rosa_rugosa	Rorug01G0352000 Rorug03G0360400.1
rosa_samantha	Rh1AG360200 Rh1BG324000 Rh1CG337200 Rh1DG354500 Rh4AG056100 Rh4BG054800 Rh4CG060700 Rh4DG052100
rosa_wichuraiana	Rw1G031730 Rw4G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	869
AciI	CCGC	3 cut(s)	96, 133, 209
AclWI	GGATC	2 cut(s)	196, 209
AcoI	YGGCCR	1 cut(s)	76
AcuI	CTGAAG	2 cut(s)	314, 589
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	2 cut(s)	485, 669
AjnI	CCWGG	3 cut(s)	78, 382, 423
AluBI	AGCT	5 cut(s)	52, 121, 541, 716, 887
AluI	AGCT	5 cut(s)	52, 121, 541, 716, 887
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	2 cut(s)	495, 700
AlwI	GGATC	2 cut(s)	196, 209
AlwNI	CAGNNNCTG	2 cut(s)	851, 887
Ama87I	CYCGRG	1 cut(s)	823
Aor13HI	TCCGGA	1 cut(s)	869
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	3 cut(s)	3, 76, 551
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	4, 82, 820
AsuHPI	GGTGA	3 cut(s)	271, 299, 658
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	82, 820
AxyI	CCTNAGG	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	78
BamHI	GGATCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	221, 595
Bbv12I	GWGCWC	1 cut(s)	880
BccI	CCATC	3 cut(s)	160, 412, 574
BceAI	ACGGC	1 cut(s)	821
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	3 cut(s)	80, 384, 425
BcoDI	GTCTC	2 cut(s)	495, 700
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	80, 384, 425
Bme18I	GGWCC	2 cut(s)	82, 820
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	3 cut(s)	4, 82, 820
BmiI	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
BmrFI	CCNGG	3 cut(s)	80, 384, 425
BpiI	GAAGAC	2 cut(s)	221, 595
BpmI	CTGGAG	2 cut(s)	107, 864
Bpu10I	CCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	800
BsaJI	CCNNGG	2 cut(s)	282, 891
BsaWI	WCCGGW	1 cut(s)	869
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	869
BseBI	CCWGG	3 cut(s)	80, 384, 425
BseDI	CCNNGG	2 cut(s)	282, 891
BseGI	GGATG	3 cut(s)	129, 435, 640
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	5 cut(s)	422, 510, 603, 621, 903
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	3 cut(s)	5, 78, 553
BsiHKAI	GWGCWC	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	3 cut(s)	219, 870, 917
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	495, 700
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	5, 78, 553
BsoBI	CYCGRG	1 cut(s)	823
Bsp1286I	GDGCHC	2 cut(s)	337, 880
Bsp13I	TCCGGA	1 cut(s)	869
Bsp143I	GATC	4 cut(s)	33, 201, 622, 637
BspACI	CCGC	3 cut(s)	96, 133, 209
BspANI	GGCC	3 cut(s)	5, 78, 553
BspCNI	CTCAG	5 cut(s)	421, 511, 604, 622, 904
BspEI	TCCGGA	1 cut(s)	869
BspLI	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	2 cut(s)	196, 209
BspQI	GCTCTTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	282, 891
BssMI	GATC	4 cut(s)	33, 201, 622, 637
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	282, 891
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	80, 384, 425
Bst4CI	ACNGT	3 cut(s)	227, 463, 566
Bst6I	CTCTTC	4 cut(s)	303, 520, 894, 915
BstDEI	CTNAG	5 cut(s)	408, 519, 612, 630, 912
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	129, 435, 640
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	4 cut(s)	36, 204, 625, 640
BstMAI	GTCTC	2 cut(s)	495, 700
BstMBI	GATC	4 cut(s)	33, 201, 622, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
BstNI	CCWGG	3 cut(s)	80, 384, 425
BstNSI	RCATGY	1 cut(s)	730
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	78, 382, 423
BstSFI	CTRYAG	1 cut(s)	843
BstV2I	GAAGAC	2 cut(s)	221, 595
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	5, 78, 553
BtsCI	GGATG	3 cut(s)	129, 435, 640
BtsIMutI	CAGTG	2 cut(s)	232, 390
CaiI	CAGNNNCTG	2 cut(s)	851, 887
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	4, 82, 820
Csp6I	GTAC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	206, 643, 727
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	5 cut(s)	408, 519, 612, 630, 912
DpnI	GATC	4 cut(s)	35, 203, 624, 639
DpnII	GATC	4 cut(s)	33, 201, 622, 637
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	4 cut(s)	303, 520, 894, 915
EarI	CTCTTC	4 cut(s)	303, 520, 894, 915
Eco130I	CCWWGG	2 cut(s)	282, 891
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	82, 820
Eco47III	AGCGCT	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	314, 589
Eco81I	CCTNAGG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	823
Eco91I	GGTNACC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	82, 820
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	78, 382, 423
EcoT14I	CCWWGG	2 cut(s)	282, 891
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	282, 891
FaeI	CATG	3 cut(s)	209, 646, 730
FaiI	YATR	7 cut(s)	75, 207, 562, 588, 644, 700, 728
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	205, 642, 726
FokI	GGATG	3 cut(s)	116, 422, 647
FriOI	GRGCYC	1 cut(s)	337
GlaI	GCGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	107, 864
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	5, 78, 553
HapII	CCGG	3 cut(s)	219, 870, 917
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	209, 646, 730
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	44, 152, 546, 926
HpaII	CCGG	3 cut(s)	219, 870, 917
HphI	GGTGA	3 cut(s)	271, 299, 658
Hpy188I	TCNGA	6 cut(s)	165, 273, 411, 520, 627, 931
Hpy188III	TCNNGA	5 cut(s)	124, 199, 398, 493, 870
Hpy99I	CGWCG	6 cut(s)	71, 95, 110, 161, 269, 935
HpyAV	CCTTC	4 cut(s)	13, 289, 490, 793
HpyCH4III	ACNGT	3 cut(s)	227, 463, 566
HpyCH4IV	ACGT	2 cut(s)	105, 264
HpyCH4V	TGCA	4 cut(s)	536, 713, 719, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
HpyF3I	CTNAG	5 cut(s)	408, 519, 612, 630, 912
HpySE526I	ACGT	2 cut(s)	105, 264
Hsp92II	CATG	3 cut(s)	209, 646, 730
HspAI	GCGC	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	869
Kzo9I	GATC	4 cut(s)	33, 201, 622, 637
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	7 cut(s)	62, 116, 126, 197, 332, 364, 883
MaeII	ACGT	2 cut(s)	105, 264
MaeIII	GTNAC	2 cut(s)	287, 673
MalI	GATC	4 cut(s)	35, 203, 624, 639
MboI	GATC	4 cut(s)	33, 201, 622, 637
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	337, 880
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	310, 954
Mox20I	TGGCCA	1 cut(s)	78
MroI	TCCGGA	1 cut(s)	869
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	2 cut(s)	450, 964
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	2 cut(s)	716, 887
MspI	CCGG	3 cut(s)	219, 870, 917
MspR9I	CCNGG	3 cut(s)	80, 384, 425
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	3 cut(s)	80, 384, 425
MwoI	GCNNNNNNNGC	5 cut(s)	533, 842, 854, 863, 884
NdeII	GATC	4 cut(s)	33, 201, 622, 637
NlaIII	CATG	3 cut(s)	209, 646, 730
NlaIV	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
NmuCI	GTSAC	2 cut(s)	287, 673
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	44, 546, 926
PflFI	GACNNNGTC	2 cut(s)	104, 155
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	2 cut(s)	82, 820
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	2 cut(s)	82, 820
Psp6I	CCWGG	3 cut(s)	78, 382, 423
PspEI	GGTNACC	1 cut(s)	287
PspGI	CCWGG	3 cut(s)	78, 382, 423
PspN4I	GGNNCC	7 cut(s)	6, 112, 203, 334, 378, 598, 822
PspPI	GGNCC	3 cut(s)	4, 82, 820
PspPPI	RGGWCCY	2 cut(s)	82, 820
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	2 cut(s)	851, 887
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	2 cut(s)	104, 155
PvuII	CAGCTG	2 cut(s)	716, 887
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	450, 964
Sau3AI	GATC	4 cut(s)	33, 201, 622, 637
Sau96I	GGNCC	3 cut(s)	4, 82, 820
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	80, 384, 425
SduI	GDGCHC	2 cut(s)	337, 880
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	2 cut(s)	82, 820
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	96, 133, 209
SspI	AATATT	1 cut(s)	779
StyD4I	CCNGG	3 cut(s)	78, 382, 423
StyI	CCWWGG	2 cut(s)	282, 891
TaaI	ACNGT	3 cut(s)	227, 463, 566
TaiI	ACGT	2 cut(s)	108, 267
TaqI	TCGA	3 cut(s)	17, 66, 465
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	44, 546, 926
Tru1I	TTAA	2 cut(s)	450, 964
Tru9I	TTAA	2 cut(s)	450, 964
TscAI	CASTG	2 cut(s)	232, 397
TseFI	GTSAC	2 cut(s)	287, 673
Tsp45I	GTSAC	2 cut(s)	287, 673
TspDTI	ATGAA	2 cut(s)	200, 669
TspGWI	ACGGA	3 cut(s)	145, 184, 589
TspRI	CASTG	2 cut(s)	232, 397
Tth111I	GACNNNGTC	2 cut(s)	104, 155
VpaK11BI	GGWCC	2 cut(s)	82, 820
XceI	RCATGY	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.