AT2G40113

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011999
Physical Location & Seq
Forward (+)
16750035 .. 16751314
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40113.1

Sequence Viewer

Length: 510 bp
ATGGAGAGCTTCTTTATCATCCGTTGCTTCTTGTTATTATTCTTCTTCTTCAACGGAGCATTTGCAGCTTCAAGTAAGTTATGGAGCATAAGAGAGATGTCGGATATGGCTGGCTACGGGGAACACAAACTCTCATCCGTAGTTATCACCGGTTCTCTTCTTTGCAACACCCCTGTTTCAGGTGCAACTGTTGCCATCAAGTGTCACACTGGACTAAAACAGAGATCAAAATGGATAAAGAGTGTTACTAATGACTTTGGAGAATTTGTCATCCATCTTCCTTCTCATCTTCACGCAATTCCGCAACTCGAAAAAGCATGTTTCGTCAAACCAATACATGTGCCTAAGCACTATCACAGATGTTACCACACTTTTTCCAAATCCAATATACACAAAGACATCAAACTTGTTTCCTCGAGAAATGGCTTCCGTGTCTACACCTCAGGGACTATCAAGTTACATGGAGGACACAGTTCAAGAACATCCCAACCTCATAAAGCCAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

169

Amino Acids

19.05

Weight (kDa)

9.86

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 56 - 117 9.1e-06 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 435
AciI CCGC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 2 cut(s) 337, 504
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 3 cut(s) 52, 72, 477
AluBI AGCT 2 cut(s) 9, 68
AluI AGCT 2 cut(s) 9, 68
Ama87I CYCGRG 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 415
AxyI CCTNAGG 1 cut(s) 442
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 203, 282
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 442
BseGI GGATG 4 cut(s) 18, 134, 270, 482
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 415
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 190, 473
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 345, 442
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 4 cut(s) 18, 134, 270, 482
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 65, 191
BstNSI RCATGY 3 cut(s) 321, 341, 508
BstV1I GCAGC 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 442
BtsCI GGATG 4 cut(s) 18, 134, 270, 482
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 149
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 4 cut(s) 318, 338, 461, 505
CviJI RGCY 6 cut(s) 9, 68, 110, 114, 426, 500
CviKI_1 RGCY 6 cut(s) 9, 68, 110, 114, 426, 500
DdeI CTNAG 2 cut(s) 345, 442
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 442
Eco88I CYCGRG 1 cut(s) 415
EcoNI CCTNNNNNAGG 1 cut(s) 177
FaeI CATG 4 cut(s) 321, 341, 464, 508
FaiI YATR 9 cut(s) 82, 89, 107, 319, 339, 389, 462, 495, 506
FaqI GGGAC 1 cut(s) 460
FatI CATG 4 cut(s) 317, 337, 460, 504
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 4 cut(s) 5, 121, 257, 469
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HapII CCGG 1 cut(s) 150
Hin1II CATG 4 cut(s) 321, 341, 464, 508
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 417, 477
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 190, 473
HpyCH4V TGCA 3 cut(s) 65, 165, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 191
HpyF3I CTNAG 2 cut(s) 345, 442
Hsp92II CATG 4 cut(s) 321, 341, 464, 508
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 2 cut(s) 56, 84
LpnPI CCDG 6 cut(s) 96, 163, 165, 186, 195, 429
Lsp1109I GCAGC 1 cut(s) 77
MaeIII GTNAC 4 cut(s) 203, 244, 362, 456
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 6 cut(s) 34, 37, 40, 149, 269, 281
MluCI AATT 2 cut(s) 263, 297
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 424, 451, 458, 501
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 65, 191
NdeII GATC 1 cut(s) 224
NlaIII CATG 4 cut(s) 321, 341, 464, 508
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 3 cut(s) 321, 341, 508
PaeR7I CTCGAG 1 cut(s) 415
PciI ACATGT 2 cut(s) 337, 504
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 1 cut(s) 67
PscI ACATGT 2 cut(s) 337, 504
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 224
SetI ASST 5 cut(s) 11, 70, 184, 443, 493
Sfr274I CTCGAG 1 cut(s) 415
SlaI CTCGAG 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 2 cut(s) 263, 297
SsiI CCGC 1 cut(s) 302
TaaI ACNGT 2 cut(s) 190, 473
TaqI TCGA 2 cut(s) 309, 416
TasI AATT 2 cut(s) 263, 297
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 4 cut(s) 11, 69, 127, 419
TspRI CASTG 1 cut(s) 214
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 1 cut(s) 263
XceI RCATGY 3 cut(s) 321, 341, 508
XhoI CTCGAG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.