Rh5DG005000

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011999
Physical Location & Seq
Forward (+)
334113 .. 336172
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG005000.1

Sequence Viewer

Length: 483 bp
ATGGTGCAGATTGCTGGATATGGAGAAGAGAAGCTTTCTACAGTACTAATTACTGGCTCCGTCCATTGTGAAGAGGCTTGTAGTCTGTCCGATGATCATGAACATCAAGCTCATCAGCTTCATCTTCATGCATGGCCTGTGTCAGGTGCTGTGGTGTCTGTCAATTGCCGTGTGGGTGGGAGAAAAAGGAAATTAAATCGATCACAAGGTGTCACAGATGAATATGGAGATTTCATGATTGATCTACCTTCCGATCTACACGCAGTTCCCAACTTGGACAAACTATGTTGCGCAAGAGTTATTCGGGTACCAAAGAACACACAGTGCAAAGCAGCATTTGTAAAGAGGCACAAGGGACTGAAATTTTCATCAGTTGGTAATGGTATCAGAACTTACAGTGCTGGAAGGATAAGATTCCAGAATTTGACACCTAAGCCTCCACAAGCATGCATTAAGAAAGCAAGCAACAACAAACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

160

Amino Acids

17.65

Weight (kDa)

9.48

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 17 - 112 3.2e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AcsI RAATTY 2 cut(s) 362, 421
AdeI CACNNNGTG 2 cut(s) 209, 324
AfaI GTAC 2 cut(s) 45, 309
AfiI CCNNNNNNNGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 34, 110, 118
AluI AGCT 3 cut(s) 34, 110, 118
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 2 cut(s) 362, 421
Asp718I GGTACC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 153
BclI TGATCA 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
BmcAI AGTACT 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 58, 309
Bpu10I CCTNAGC 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 199
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 4 cut(s) 94, 200, 241, 253
BspANI GGCC 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 199
BspHI TCATGA 2 cut(s) 97, 234
BspLI GGNNCC 2 cut(s) 58, 309
BspT107I GGYRCC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 58
BssMI GATC 4 cut(s) 94, 200, 241, 253
Bst4CI ACNGT 3 cut(s) 43, 324, 398
Bst6I CTCTTC 2 cut(s) 21, 66
BstC8I GCNNGC 2 cut(s) 448, 463
BstDEI CTNAG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 4 cut(s) 97, 203, 244, 256
BstMBI GATC 4 cut(s) 94, 200, 241, 253
BstNSI RCATGY 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 344
Bsu15I ATCGAT 1 cut(s) 199
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 329, 403
Cac8I GCNNGC 2 cut(s) 448, 463
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 2 cut(s) 97, 234
CfoI GCGC 1 cut(s) 293
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 2 cut(s) 44, 308
CviAII CATG 5 cut(s) 98, 128, 132, 235, 447
CviJI RGCY 7 cut(s) 34, 57, 77, 110, 118, 136, 436
CviKI_1 RGCY 7 cut(s) 34, 57, 77, 110, 118, 136, 436
CviQI GTAC 2 cut(s) 44, 308
DdeI CTNAG 1 cut(s) 432
DpnI GATC 4 cut(s) 96, 202, 243, 255
DpnII GATC 4 cut(s) 94, 200, 241, 253
DraIII CACNNNGTG 2 cut(s) 209, 324
Eam1104I CTCTTC 2 cut(s) 21, 66
EarI CTCTTC 2 cut(s) 21, 66
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoT22I ATGCAT 2 cut(s) 133, 452
FaeI CATG 5 cut(s) 101, 131, 135, 238, 450
FaiI YATR 8 cut(s) 21, 99, 129, 133, 225, 236, 286, 448
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 1 cut(s) 369
FatI CATG 5 cut(s) 97, 127, 131, 234, 446
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 333
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 1 cut(s) 136
HhaI GCGC 1 cut(s) 293
Hin1II CATG 5 cut(s) 101, 131, 135, 238, 450
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 414
Hpy188I TCNGA 3 cut(s) 91, 253, 389
Hpy188III TCNNGA 3 cut(s) 98, 235, 418
HpyAV CCTTC 2 cut(s) 258, 399
HpyCH4III ACNGT 3 cut(s) 43, 324, 398
HpyCH4V TGCA 4 cut(s) 7, 131, 327, 450
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 5 cut(s) 101, 131, 135, 238, 450
HspAI GCGC 1 cut(s) 291
KpnI GGTACC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 200, 241, 253
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 39, 129, 150, 387, 431
Lsp1109I GCAGC 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 211
MalI GATC 4 cut(s) 96, 202, 243, 255
MboI GATC 4 cut(s) 94, 200, 241, 253
MboII GAAGA 3 cut(s) 38, 83, 116
MfeI CAATTG 1 cut(s) 163
MluCI AATT 5 cut(s) 48, 163, 191, 362, 421
MnlI CCTC 3 cut(s) 67, 339, 447
Mph1103I ATGCAT 2 cut(s) 133, 452
MseI TTAA 2 cut(s) 194, 453
MslI CAYNNNNRTG 2 cut(s) 126, 445
MunI CAATTG 1 cut(s) 163
NdeII GATC 4 cut(s) 94, 200, 241, 253
NlaIII CATG 5 cut(s) 101, 131, 135, 238, 450
NlaIV GGNNCC 2 cut(s) 58, 309
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 292
NsiI ATGCAT 2 cut(s) 133, 452
NspI RCATGY 1 cut(s) 450
PaeI GCATGC 1 cut(s) 450
PagI TCATGA 2 cut(s) 97, 234
PfeI GAWTC 1 cut(s) 414
PkrI GCNGC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 58, 309
PstNI CAGNNNCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 45, 309
RsaNI GTAC 2 cut(s) 44, 308
RseI CAYNNNNRTG 2 cut(s) 126, 445
SaqAI TTAA 2 cut(s) 194, 453
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 4 cut(s) 94, 200, 241, 253
ScaI AGTACT 1 cut(s) 45
SetI ASST 7 cut(s) 36, 112, 120, 148, 211, 250, 433
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 126, 445
SphI GCATGC 1 cut(s) 450
Sse9I AATT 5 cut(s) 48, 163, 191, 362, 421
TaaI ACNGT 3 cut(s) 43, 324, 398
TaqI TCGA 1 cut(s) 199
TasI AATT 5 cut(s) 48, 163, 191, 362, 421
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 2 cut(s) 194, 453
Tru9I TTAA 2 cut(s) 194, 453
TscAI CASTG 2 cut(s) 329, 403
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 6 cut(s) 110, 114, 116, 223, 234, 357
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 329, 403
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 2 cut(s) 362, 421
XceI RCATGY 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 45
Zsp2I ATGCAT 2 cut(s) 133, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.