AT5G47635

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011999
Physical Location & Seq
Reverse (-)
19307048 .. 19308009
962 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47635.1

Sequence Viewer

Length: 495 bp
ATGGGAAGCTTCTTCATCATCCGTTGCTTCTTGTTACTCTCTTTCTTCTTGTTCACCGGAGCATTTGGGAATAATTTATGGACCAGAACGGAAATGGTGGAGATGGCTGGCTACGGTGAACAGAAACTCTCCTCTGTCGTGATCACCGGATCTCTTCTCTGCGACACTTCACGTCCTCACCTTCACTCCATCCCTATCCCAGGTGCCACCGTTGCCATCAAGTGCCACACTGGATCCAAAAGGAGGTCCAAATGGATTAAGGCTGTTACTGATGAATTGGGAGAGTTTGAAATCGATCTTCCCTCCCAACTCCATGCGATTCCACACCTTGAAAACACTTGTTTCATCAAGCCAGTATATGTGCCTAGGCCCTATAGATGCTATAACACCTCTACCAATATACACAAACCTATCAAACTTGTTTCCTCTACCAATGGTTTCCGTGTCTACACCTCAGGGAAAATCAGGTTACAGGGCCACAGTTCGAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

164

Amino Acids

18.42

Weight (kDa)

9.6

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 48 - 127 2e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 447
AclWI GGATC 3 cut(s) 157, 228, 241
AfiI CCNNNNNNNGG 2 cut(s) 200, 243
AgsI TTSAA 2 cut(s) 290, 332
AjiI CACGTC 1 cut(s) 173
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwI GGATC 3 cut(s) 157, 228, 241
AoxI GGCC 2 cut(s) 368, 475
AspA2I CCTAGG 1 cut(s) 365
AspS9I GGNCC 4 cut(s) 81, 246, 369, 475
AsuHPI GGTGA 4 cut(s) 46, 128, 136, 170
AvaII GGWCC 2 cut(s) 81, 246
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 454
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 203
BccI CCATC 3 cut(s) 97, 197, 224
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 141
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 373
BlnI CCTAGG 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 2 cut(s) 81, 246
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 4 cut(s) 81, 246, 369, 475
BmiI GGNNCC 2 cut(s) 205, 235
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 199, 365
BsaWI WCCGGW 2 cut(s) 56, 146
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 243
Bse1I ACTGG 2 cut(s) 235, 353
Bse21I CCTNAGG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 199, 365
BseGI GGATG 2 cut(s) 18, 189
BseLI CCNNNNNNNGG 2 cut(s) 200, 243
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 235, 353
BseRI GAGGAG 1 cut(s) 121
BshFI GGCC 2 cut(s) 370, 477
BshNI GGYRCC 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 294
BsiSI CCGG 2 cut(s) 57, 147
BslI CCNNNNNNNGG 2 cut(s) 200, 243
BsnI GGCC 2 cut(s) 370, 477
Bsp143I GATC 5 cut(s) 141, 149, 233, 295, 488
BspANI GGCC 2 cut(s) 370, 477
BspCNI CTCAG 1 cut(s) 467
BspDI ATCGAT 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 205, 235
BspPI GGATC 3 cut(s) 157, 228, 241
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 235, 353
BssECI CCNNGG 2 cut(s) 199, 365
BssMI GATC 5 cut(s) 141, 149, 233, 295, 488
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 116, 211, 482
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 18, 189
BstKTI GATC 5 cut(s) 144, 152, 236, 298, 491
BstMBI GATC 5 cut(s) 141, 149, 233, 295, 488
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 373
BstX2I RGATCY 2 cut(s) 149, 233
BstYI RGATCY 2 cut(s) 149, 233
Bsu15I ATCGAT 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 454
BsuRI GGCC 2 cut(s) 370, 477
BsuTUI ATCGAT 1 cut(s) 294
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 2 cut(s) 18, 189
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 109
Cfr13I GGNCC 4 cut(s) 81, 246, 369, 475
ClaI ATCGAT 1 cut(s) 294
CviAII CATG 1 cut(s) 314
CviJI RGCY 7 cut(s) 9, 107, 111, 263, 352, 370, 477
CviKI_1 RGCY 7 cut(s) 9, 107, 111, 263, 352, 370, 477
DdeI CTNAG 1 cut(s) 454
DpnI GATC 5 cut(s) 143, 151, 235, 297, 490
DpnII GATC 5 cut(s) 141, 149, 233, 295, 488
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 365
Eco47I GGWCC 2 cut(s) 81, 246
Eco81I CCTNAGG 1 cut(s) 454
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 1 cut(s) 317
FaiI YATR 8 cut(s) 79, 315, 358, 360, 375, 384, 401, 493
FatI CATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 447
FokI GGATG 2 cut(s) 5, 176
FspBI CTAG 1 cut(s) 366
HaeIII GGCC 2 cut(s) 370, 477
HapII CCGG 2 cut(s) 57, 147
Hin1II CATG 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 1 cut(s) 319
HpaII CCGG 2 cut(s) 57, 147
HphI GGTGA 4 cut(s) 46, 128, 136, 170
Hpy166II GTNNAC 3 cut(s) 54, 119, 448
Hpy188III TCNNGA 2 cut(s) 139, 486
Hpy8I GTNNAC 3 cut(s) 54, 119, 448
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 116, 211, 482
HpyCH4IV ACGT 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 454
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 5 cut(s) 141, 149, 233, 295, 488
LmnI GCTCC 1 cut(s) 59
LweI GCATC 1 cut(s) 368
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 3 cut(s) 33, 265, 468
MalI GATC 5 cut(s) 143, 151, 235, 297, 490
MboI GATC 5 cut(s) 141, 149, 233, 295, 488
MboII GAAGA 4 cut(s) 4, 37, 146, 290
MflI RGATCY 2 cut(s) 149, 233
MluCI AATT 2 cut(s) 73, 275
MnlI CCTC 7 cut(s) 142, 186, 237, 313, 400, 436, 463
MseI TTAA 1 cut(s) 258
MspI CCGG 2 cut(s) 57, 147
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 5 cut(s) 141, 149, 233, 295, 488
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 2 cut(s) 205, 235
PfeI GAWTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 205, 235
PspPI GGNCC 4 cut(s) 81, 246, 369, 475
PsuI RGATCY 2 cut(s) 149, 233
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 5 cut(s) 141, 149, 233, 295, 488
Sau96I GGNCC 4 cut(s) 81, 246, 369, 475
ScrFI CCNGG 1 cut(s) 201
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 373
SinI GGWCC 2 cut(s) 81, 246
Sse9I AATT 2 cut(s) 73, 275
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 3 cut(s) 116, 211, 482
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 294, 485
TasI AATT 2 cut(s) 73, 275
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 4, 288, 334
TspGWI ACGGA 3 cut(s) 11, 104, 431
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 81, 246
XagI CCTNNNNNAGG 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmaJI CCTAGG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.