Rroxscaffold_1G00075640

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011999
Physical Location & Seq
Reverse (-)
96305995 .. 96308356
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075640.1

Sequence Viewer

Length: 669 bp
ATGAGCTCATACTTTTGCAGCAACCACAAGCTTCTGAGGAAGAGCATCAACATGTACTATTACAATATCTTCCTCTTCTTCTTCTTCTTCTGCTGTCTCATCACAGTTTCAAGGGCGGATGATCATGATCAAGTAGCAGTGCAGCAGCAAAACCCGTTACACCAGTTACTCTCCAGCCGAAAAGATCTGGTGCAGATTGCTGGATATGGAGAAGAGAAGCTTTCTACAGTACTAATTACTGGCTCCGTCCATTGTGAAGAGGCTTGTAGTCTGTCCGATGATCATGAACATCAAGCTCATCAGCTTCATCTTCATGCATGGCCTGTGTCAGGTGCTGTGGTGTCTGTCAATTGCCGTGTGGGTGGGAGAAAAAGGAAATTAAGTCGGTCACAAGGTGTCACAGATGAATATGGAGATTTCATGATTGATCTACCTTCCGATCTACACGCAGTTCCCAACTTGGACAAACTATGTTGCGCAAGAGTTATTCGGGTACCAAAGAACACACAGTGCAAAGCAGCATTTGTAAAGAGGCACAAGGGACTGAAATTATCATCAGTTGGTAATGGTATCAGAACTTACAGTGCTGGAAAGATAAGATTCCAGAATTTGACACCTAAGCCTCCACAAGCATGCATTAAGAAAGCAAGCAACAACAAACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

222

Amino Acids

25.0

Weight (kDa)

9.33

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 79 - 174 3.1e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 478
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 493
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 607
AdeI CACNNNGTG 2 cut(s) 395, 510
AfaI GTAC 3 cut(s) 56, 231, 495
AfiI CCNNNNNNNGG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 111
AluBI AGCT 5 cut(s) 6, 31, 220, 296, 304
AluI AGCT 5 cut(s) 6, 31, 220, 296, 304
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 4 cut(s) 18, 142, 145, 518
ApoI RAATTY 1 cut(s) 607
Asp718I GGTACC 1 cut(s) 493
AspLEI GCGC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 30, 154, 157, 530
BceAI ACGGC 1 cut(s) 339
BclI TGATCA 3 cut(s) 121, 127, 280
BcoDI GTCTC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 225
BglII AGATCT 1 cut(s) 184
BisI GCNGC 4 cut(s) 19, 143, 146, 519
BlsI GCNGC 4 cut(s) 20, 144, 147, 520
BmcAI AGTACT 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 244, 495
BmsI GCATC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 163, 244
Bse8I GATNNNNATC 1 cut(s) 126
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 163, 244
BseXI GCAGC 4 cut(s) 30, 154, 157, 530
BsgI GTGCAG 2 cut(s) 161, 212
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 6 cut(s) 121, 127, 184, 280, 427, 439
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 3 cut(s) 124, 283, 420
BspLI GGNNCC 2 cut(s) 244, 495
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 493
BsrI ACTGG 2 cut(s) 163, 244
BssMI GATC 6 cut(s) 121, 127, 184, 280, 427, 439
Bst4CI ACNGT 4 cut(s) 106, 229, 510, 584
Bst6I CTCTTC 4 cut(s) 35, 80, 207, 252
BstC8I GCNNGC 2 cut(s) 634, 649
BstDEI CTNAG 2 cut(s) 35, 618
BstENI CCTNNNNNAGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 6 cut(s) 124, 130, 187, 283, 430, 442
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 6 cut(s) 121, 127, 184, 280, 427, 439
BstNSI RCATGY 2 cut(s) 55, 636
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 30, 154, 157, 530
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 3 cut(s) 144, 515, 589
Cac8I GCNNGC 2 cut(s) 634, 649
CaiI CAGNNNCTG 1 cut(s) 335
CciI TCATGA 3 cut(s) 124, 283, 420
CfoI GCGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 55, 230, 494
CviAII CATG 7 cut(s) 52, 125, 284, 314, 318, 421, 633
CviQI GTAC 3 cut(s) 55, 230, 494
DdeI CTNAG 2 cut(s) 35, 618
DpnI GATC 6 cut(s) 123, 129, 186, 282, 429, 441
DpnII GATC 6 cut(s) 121, 127, 184, 280, 427, 439
DraIII CACNNNGTG 2 cut(s) 395, 510
Eam1104I CTCTTC 4 cut(s) 35, 80, 207, 252
EarI CTCTTC 4 cut(s) 35, 80, 207, 252
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 319, 638
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 7 cut(s) 55, 128, 287, 317, 321, 424, 636
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 1 cut(s) 555
FatI CATG 7 cut(s) 51, 124, 283, 313, 317, 420, 632
FbaI TGATCA 3 cut(s) 121, 127, 280
Fnu4HI GCNGC 4 cut(s) 19, 143, 146, 519
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 19, 143, 146, 519
FspI TGCGCA 1 cut(s) 478
GlaI GCGC 1 cut(s) 478
GluI GCNGC 4 cut(s) 19, 143, 146, 519
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 322
HhaI GCGC 1 cut(s) 479
Hin1II CATG 7 cut(s) 55, 128, 287, 317, 321, 424, 636
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HindIII AAGCTT 2 cut(s) 29, 218
HinfI GANTC 1 cut(s) 600
Hpy188I TCNGA 4 cut(s) 36, 277, 439, 575
Hpy188III TCNNGA 4 cut(s) 125, 284, 421, 604
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 4 cut(s) 106, 229, 510, 584
HpyCH4V TGCA 6 cut(s) 18, 142, 193, 317, 513, 636
HpyF3I CTNAG 2 cut(s) 35, 618
Hsp92II CATG 7 cut(s) 55, 128, 287, 317, 321, 424, 636
HspAI GCGC 1 cut(s) 477
KpnI GGTACC 1 cut(s) 497
Ksp22I TGATCA 3 cut(s) 121, 127, 280
Kzo9I GATC 6 cut(s) 121, 127, 184, 280, 427, 439
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 9 cut(s) 173, 176, 186, 187, 225, 315, 336, 573, 617
Lsp1109I GCAGC 4 cut(s) 30, 154, 157, 530
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 4 cut(s) 156, 165, 387, 397
MalI GATC 6 cut(s) 123, 129, 186, 282, 429, 441
MboI GATC 6 cut(s) 121, 127, 184, 280, 427, 439
MfeI CAATTG 1 cut(s) 349
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 234, 349, 377, 548, 607
MnlI CCTC 5 cut(s) 30, 83, 253, 525, 633
Mph1103I ATGCAT 2 cut(s) 319, 638
MseI TTAA 2 cut(s) 380, 639
MslI CAYNNNNRTG 3 cut(s) 50, 312, 631
MunI CAATTG 1 cut(s) 349
NdeII GATC 6 cut(s) 121, 127, 184, 280, 427, 439
NlaIII CATG 7 cut(s) 55, 128, 287, 317, 321, 424, 636
NlaIV GGNNCC 2 cut(s) 244, 495
NmuCI GTSAC 2 cut(s) 387, 397
NsbI TGCGCA 1 cut(s) 478
NsiI ATGCAT 2 cut(s) 319, 638
NspI RCATGY 2 cut(s) 55, 636
PaeI GCATGC 1 cut(s) 636
PagI TCATGA 3 cut(s) 124, 283, 420
PciI ACATGT 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 600
PkrI GCNGC 4 cut(s) 20, 144, 147, 520
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 244, 495
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 56, 231, 495
RsaNI GTAC 3 cut(s) 55, 230, 494
RseI CAYNNNNRTG 3 cut(s) 50, 312, 631
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 380, 639
SatI GCNGC 4 cut(s) 19, 143, 146, 519
Sau3AI GATC 6 cut(s) 121, 127, 184, 280, 427, 439
ScaI AGTACT 1 cut(s) 231
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 33, 222, 298, 306, 334, 397, 436, 619
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 3 cut(s) 50, 312, 631
SphI GCATGC 1 cut(s) 636
Sse9I AATT 5 cut(s) 234, 349, 377, 548, 607
SsiI CCGC 1 cut(s) 116
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 4 cut(s) 106, 229, 510, 584
TaqII GACCGA 1 cut(s) 375
TasI AATT 5 cut(s) 234, 349, 377, 548, 607
TatI WGTACW 2 cut(s) 54, 229
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 2 cut(s) 380, 639
Tru9I TTAA 2 cut(s) 380, 639
TscAI CASTG 3 cut(s) 144, 515, 589
TseFI GTSAC 2 cut(s) 387, 397
TseI GCWGC 4 cut(s) 18, 142, 145, 518
Tsp45I GTSAC 2 cut(s) 387, 397
TspDTI ATGAA 5 cut(s) 296, 300, 302, 409, 420
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 3 cut(s) 144, 515, 589
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 1 cut(s) 607
XceI RCATGY 2 cut(s) 55, 636
ZrmI AGTACT 1 cut(s) 231
Zsp2I ATGCAT 2 cut(s) 319, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.