RLG00000030876

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011999
Physical Location & Seq
Forward (+)
387680 .. 389935
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030876

Sequence Viewer

Length: 663 bp
ATGAGCTCATACTTTTGCAGCAACCACAAGCTTCTGAGGAATAGCATCAACATGTACTACTACAATATGTTCTTCTTCTTCTTCTGCTGTCTCATCACAGTTTCAAGGGCGGATGATCATGATCAAGTAGCAGTGCCGCAGCAAAACCCGTTACACCAGTTACTCTCCAGCCGAAAAGATCTGGTGCAGATTGCTGGGTATGGGGAAGAGAAGCTTTCTACAGTACTAATTACTGGCTCCGTCCATTGTGAAGAGGCTTGTAGTCTGTCCGATCATCATGAACATCAAGCTCATCAGCTTCATCTTCATGCATGGCCTGTGTCAGGTGCTGTGGTGTCTGTCAATTGCCGTGTGGGTGGGAGAAAAATGAAATTAAGTCGGTCACAAGGTGTCACAGATGAATATGGAGATTTCATGATTGATCTACCTTCCGATCTACACGCAGTTCCCAACTTGGACAAACTATGTTGCGCAAGAGTTATTCGGGTACCAAAGAACACACAGTGCAAAGCAGCATTTGTAAAGAGGCACAAGGGACTGAAATTATCATCAGTTGGTAATGGTATCAGAACTTACAGTGCTGGAAGGATAAGATTCCAGAATTTGACACCTAAGCCTCCACAAGCATGCATTAAGAAAGCAAGCAACAACAAACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

221

Amino Acids

24.73

Weight (kDa)

9.27

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 77 - 172 5.3e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 472
Acc65I GGTACC 1 cut(s) 487
AccB1I GGYRCC 1 cut(s) 487
AciI CCGC 2 cut(s) 110, 137
AcsI RAATTY 1 cut(s) 601
AdeI CACNNNGTG 2 cut(s) 389, 504
AfaI GTAC 3 cut(s) 56, 225, 489
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 5 cut(s) 6, 31, 214, 290, 298
AluI AGCT 5 cut(s) 6, 31, 214, 290, 298
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 18, 139, 512
ApoI RAATTY 1 cut(s) 601
Asp718I GGTACC 1 cut(s) 487
AspLEI GCGC 1 cut(s) 473
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 30, 151, 524
BceAI ACGGC 1 cut(s) 333
BclI TGATCA 2 cut(s) 115, 121
BcoDI GTCTC 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 178
BisI GCNGC 4 cut(s) 19, 137, 140, 513
BlsI GCNGC 4 cut(s) 20, 138, 141, 514
BmcAI AGTACT 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 238, 489
BmsI GCATC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 157, 238
Bse8I GATNNNNATC 1 cut(s) 120
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 157, 238
BseXI GCAGC 3 cut(s) 30, 151, 524
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 549
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 6 cut(s) 115, 121, 178, 271, 421, 433
BspACI CCGC 2 cut(s) 110, 137
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 3 cut(s) 118, 277, 414
BspLI GGNNCC 2 cut(s) 238, 489
BspT107I GGYRCC 1 cut(s) 487
BsrI ACTGG 2 cut(s) 157, 238
BssMI GATC 6 cut(s) 115, 121, 178, 271, 421, 433
Bst4CI ACNGT 4 cut(s) 100, 223, 504, 578
Bst6I CTCTTC 2 cut(s) 201, 246
BstC8I GCNNGC 2 cut(s) 628, 643
BstDEI CTNAG 2 cut(s) 35, 612
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 6 cut(s) 118, 124, 181, 274, 424, 436
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 6 cut(s) 115, 121, 178, 271, 421, 433
BstNSI RCATGY 2 cut(s) 55, 630
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 30, 151, 524
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 509, 583
Cac8I GCNNGC 2 cut(s) 628, 643
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 3 cut(s) 118, 277, 414
CfoI GCGC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 55, 224, 488
CviAII CATG 7 cut(s) 52, 119, 278, 308, 312, 415, 627
CviQI GTAC 3 cut(s) 55, 224, 488
DdeI CTNAG 2 cut(s) 35, 612
DpnI GATC 6 cut(s) 117, 123, 180, 273, 423, 435
DpnII GATC 6 cut(s) 115, 121, 178, 271, 421, 433
DraIII CACNNNGTG 2 cut(s) 389, 504
Eam1104I CTCTTC 2 cut(s) 201, 246
EarI CTCTTC 2 cut(s) 201, 246
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoT22I ATGCAT 2 cut(s) 313, 632
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 7 cut(s) 55, 122, 281, 311, 315, 418, 630
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 549
FatI CATG 7 cut(s) 51, 118, 277, 307, 311, 414, 626
FbaI TGATCA 2 cut(s) 115, 121
Fnu4HI GCNGC 4 cut(s) 19, 137, 140, 513
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 19, 137, 140, 513
FspI TGCGCA 1 cut(s) 472
GlaI GCGC 1 cut(s) 472
GluI GCNGC 4 cut(s) 19, 137, 140, 513
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 1 cut(s) 316
HhaI GCGC 1 cut(s) 473
Hin1II CATG 7 cut(s) 55, 122, 281, 311, 315, 418, 630
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HindIII AAGCTT 2 cut(s) 29, 212
HinfI GANTC 1 cut(s) 594
Hpy188I TCNGA 4 cut(s) 36, 271, 433, 569
Hpy188III TCNNGA 4 cut(s) 119, 278, 415, 598
HpyAV CCTTC 2 cut(s) 438, 579
HpyCH4III ACNGT 4 cut(s) 100, 223, 504, 578
HpyCH4V TGCA 5 cut(s) 18, 187, 311, 507, 630
HpyF3I CTNAG 2 cut(s) 35, 612
Hsp92II CATG 7 cut(s) 55, 122, 281, 311, 315, 418, 630
HspAI GCGC 1 cut(s) 471
KpnI GGTACC 1 cut(s) 491
Ksp22I TGATCA 2 cut(s) 115, 121
Kzo9I GATC 6 cut(s) 115, 121, 178, 271, 421, 433
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 9 cut(s) 167, 170, 180, 181, 219, 309, 330, 567, 611
Lsp1109I GCAGC 3 cut(s) 30, 151, 524
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 4 cut(s) 150, 159, 381, 391
MalI GATC 6 cut(s) 117, 123, 180, 273, 423, 435
MboI GATC 6 cut(s) 115, 121, 178, 271, 421, 433
MboII GAAGA 7 cut(s) 64, 67, 70, 73, 218, 263, 296
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 228, 343, 371, 542, 601
MnlI CCTC 4 cut(s) 30, 247, 519, 627
Mph1103I ATGCAT 2 cut(s) 313, 632
MseI TTAA 2 cut(s) 374, 633
MslI CAYNNNNRTG 3 cut(s) 50, 306, 625
MunI CAATTG 1 cut(s) 343
NdeII GATC 6 cut(s) 115, 121, 178, 271, 421, 433
NlaIII CATG 7 cut(s) 55, 122, 281, 311, 315, 418, 630
NlaIV GGNNCC 2 cut(s) 238, 489
NmuCI GTSAC 2 cut(s) 381, 391
NsbI TGCGCA 1 cut(s) 472
NsiI ATGCAT 2 cut(s) 313, 632
NspI RCATGY 2 cut(s) 55, 630
PaeI GCATGC 1 cut(s) 630
PagI TCATGA 3 cut(s) 118, 277, 414
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 1 cut(s) 594
PkrI GCNGC 4 cut(s) 20, 138, 141, 514
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 238, 489
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 3 cut(s) 56, 225, 489
RsaNI GTAC 3 cut(s) 55, 224, 488
RseI CAYNNNNRTG 3 cut(s) 50, 306, 625
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 374, 633
SatI GCNGC 4 cut(s) 19, 137, 140, 513
Sau3AI GATC 6 cut(s) 115, 121, 178, 271, 421, 433
ScaI AGTACT 1 cut(s) 225
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 33, 216, 292, 300, 328, 391, 430, 613
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 3 cut(s) 50, 306, 625
SphI GCATGC 1 cut(s) 630
Sse9I AATT 5 cut(s) 228, 343, 371, 542, 601
SsiI CCGC 2 cut(s) 110, 137
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 4 cut(s) 100, 223, 504, 578
TaqII GACCGA 1 cut(s) 369
TasI AATT 5 cut(s) 228, 343, 371, 542, 601
TatI WGTACW 2 cut(s) 54, 223
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 2 cut(s) 374, 633
Tru9I TTAA 2 cut(s) 374, 633
TscAI CASTG 3 cut(s) 138, 509, 583
TseFI GTSAC 2 cut(s) 381, 391
TseI GCWGC 3 cut(s) 18, 139, 512
Tsp45I GTSAC 2 cut(s) 381, 391
TspDTI ATGAA 6 cut(s) 290, 294, 296, 383, 403, 414
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 3 cut(s) 138, 509, 583
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 1 cut(s) 601
XceI RCATGY 2 cut(s) 55, 630
ZrmI AGTACT 1 cut(s) 225
Zsp2I ATGCAT 2 cut(s) 313, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.