FvH4_3g00370

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011999
Physical Location & Seq
Forward (+)
204224 .. 206663
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00370.t1

Sequence Viewer

Length: 663 bp
ATGAGCTTATACTTTTGCGGCCACCACAAGCTTCTGAGGAATAGCATCAATATGTACTACTACAATATCCTCTTCTTCTTCATCTGCTGCTGTCTCGTCACAGTCTGCATGTCGGATGATCATGATCAAGTAGCAGTGCAGCAGCAGAACCCGTTACACCAGATGCTGTCCAGCCGAAAAGATCTGGTGCAGATTGCTGGATACGGAGAAGAGAAGCTTTCTACAGTTCTAATTACTGGCTCCGTCCATTGTGAAGAGGCGTGTAGCCTGTCTGATGATCATGAACAAGCTCATCAGCTTCATCTTCATGCATGGCCTGTCTCAGGTGCTGTGGTGTCTGTGAATTGCCGTGTGGGTGGGAGAAAAAGGAAATCAAGTCGGTCACTAGGTGTCGCTGATGAATACGGAGATTTCATGATTGAACTACCTTCTGATTTACACGCAGTTCCCAACTTGGACAAACTATGTTGCGCTAGAGTAATTCGGGTACCAAAGAACACACAATGCAAAGCAGCATTTGTAAAGAGGCACAAGGGGCTGAAATTATCATCAGTTGGTAATGGTATTAGAACTTACAGTGCTGGAAGGATAAGATTCCAGAATTTGACACCTAAGCCTCCACAAGCATGCATCAAGAAAACAAGCAACAACAAACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

221

Amino Acids

24.65

Weight (kDa)

9.09

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 78 - 172 1.3e-07 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 487
AccB1I GGYRCC 1 cut(s) 487
AciI CCGC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 601
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 56, 489
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 5 cut(s) 6, 31, 217, 290, 298
AluI AGCT 5 cut(s) 6, 31, 217, 290, 298
Alw26I GTCTC 2 cut(s) 98, 325
AlwNI CAGNNNCTG 2 cut(s) 166, 329
AoxI GGCC 2 cut(s) 19, 314
ApeKI GCWGC 4 cut(s) 87, 139, 142, 512
ApoI RAATTY 1 cut(s) 601
Asp718I GGTACC 1 cut(s) 487
AspLEI GCGC 1 cut(s) 473
BanI GGYRCC 1 cut(s) 487
BbvI GCAGC 4 cut(s) 74, 151, 154, 524
BceAI ACGGC 1 cut(s) 333
BciVI GTATCC 1 cut(s) 194
BclI TGATCA 3 cut(s) 118, 124, 277
BcoDI GTCTC 2 cut(s) 98, 325
BfaI CTAG 2 cut(s) 386, 474
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 194
BglII AGATCT 1 cut(s) 181
BisI GCNGC 5 cut(s) 19, 88, 140, 143, 513
BlsI GCNGC 5 cut(s) 20, 89, 141, 144, 514
BmiI GGNNCC 2 cut(s) 241, 489
BmsI GCATC 3 cut(s) 54, 153, 639
Bpu10I CCTNAGC 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 123
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 26, 336
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 4 cut(s) 74, 151, 154, 524
BsgI GTGCAG 2 cut(s) 158, 209
BshFI GGCC 2 cut(s) 21, 316
BshNI GGYRCC 1 cut(s) 487
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 98, 325
BsnI GGCC 2 cut(s) 21, 316
Bsp143I GATC 4 cut(s) 118, 124, 181, 277
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 21, 316
BspCNI CTCAG 2 cut(s) 27, 335
BspHI TCATGA 3 cut(s) 121, 280, 414
BspLI GGNNCC 2 cut(s) 241, 489
BspT107I GGYRCC 1 cut(s) 487
BsrI ACTGG 1 cut(s) 241
BssMI GATC 4 cut(s) 118, 124, 181, 277
Bst4CI ACNGT 3 cut(s) 103, 226, 578
Bst6I CTCTTC 3 cut(s) 77, 204, 249
BstC8I GCNNGC 1 cut(s) 628
BstDEI CTNAG 3 cut(s) 35, 322, 612
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 4 cut(s) 121, 127, 184, 280
BstMAI GTCTC 2 cut(s) 98, 325
BstMBI GATC 4 cut(s) 118, 124, 181, 277
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNSI RCATGY 2 cut(s) 112, 630
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 4 cut(s) 74, 151, 154, 524
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 21, 316
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 141, 583
Cac8I GCNNGC 1 cut(s) 628
CaiI CAGNNNCTG 2 cut(s) 166, 329
CciI TCATGA 3 cut(s) 121, 280, 414
CfoI GCGC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 55, 488
CviAII CATG 7 cut(s) 109, 122, 281, 308, 312, 415, 627
CviQI GTAC 2 cut(s) 55, 488
DdeI CTNAG 3 cut(s) 35, 322, 612
DpnI GATC 4 cut(s) 120, 126, 183, 279
DpnII GATC 4 cut(s) 118, 124, 181, 277
DraIII CACNNNGTG 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 3 cut(s) 77, 204, 249
EarI CTCTTC 3 cut(s) 77, 204, 249
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoT22I ATGCAT 2 cut(s) 313, 632
FaeI CATG 7 cut(s) 112, 125, 284, 311, 315, 418, 630
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 7 cut(s) 108, 121, 280, 307, 311, 414, 626
FbaI TGATCA 3 cut(s) 118, 124, 277
Fnu4HI GCNGC 5 cut(s) 19, 88, 140, 143, 513
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 19, 88, 140, 143, 513
FspBI CTAG 2 cut(s) 386, 474
GlaI GCGC 1 cut(s) 472
GluI GCNGC 5 cut(s) 19, 88, 140, 143, 513
HaeIII GGCC 2 cut(s) 21, 316
HhaI GCGC 1 cut(s) 473
Hin1II CATG 7 cut(s) 112, 125, 284, 311, 315, 418, 630
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HindIII AAGCTT 2 cut(s) 29, 215
HinfI GANTC 1 cut(s) 594
Hpy188I TCNGA 4 cut(s) 36, 115, 274, 433
Hpy188III TCNNGA 5 cut(s) 122, 281, 415, 598, 634
HpyAV CCTTC 2 cut(s) 438, 579
HpyCH4III ACNGT 3 cut(s) 103, 226, 578
HpyCH4V TGCA 6 cut(s) 108, 139, 190, 311, 507, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 3 cut(s) 35, 322, 612
Hsp92II CATG 7 cut(s) 112, 125, 284, 311, 315, 418, 630
HspAI GCGC 1 cut(s) 471
KpnI GGTACC 1 cut(s) 491
Ksp22I TGATCA 3 cut(s) 118, 124, 277
Kzo9I GATC 4 cut(s) 118, 124, 181, 277
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 4 cut(s) 74, 151, 154, 524
LweI GCATC 3 cut(s) 54, 153, 639
MaeI CTAG 2 cut(s) 386, 474
MaeIII GTNAC 3 cut(s) 97, 153, 381
MalI GATC 4 cut(s) 120, 126, 183, 279
MboI GATC 4 cut(s) 118, 124, 181, 277
MboII GAAGA 6 cut(s) 64, 67, 70, 221, 266, 296
MflI RGATCY 1 cut(s) 181
MluCI AATT 5 cut(s) 231, 343, 480, 542, 601
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 30, 80, 250, 519, 627
Mph1103I ATGCAT 2 cut(s) 313, 632
MslI CAYNNNNRTG 3 cut(s) 50, 306, 625
MwoI GCNNNNNNNGC 1 cut(s) 535
NdeII GATC 4 cut(s) 118, 124, 181, 277
NlaIII CATG 7 cut(s) 112, 125, 284, 311, 315, 418, 630
NlaIV GGNNCC 2 cut(s) 241, 489
NmuCI GTSAC 2 cut(s) 97, 381
NsiI ATGCAT 2 cut(s) 313, 632
NspI RCATGY 2 cut(s) 112, 630
PaeI GCATGC 1 cut(s) 630
PagI TCATGA 3 cut(s) 121, 280, 414
PfeI GAWTC 1 cut(s) 594
PkrI GCNGC 5 cut(s) 20, 89, 141, 144, 514
PspN4I GGNNCC 2 cut(s) 241, 489
PstNI CAGNNNCTG 2 cut(s) 166, 329
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 56, 489
RsaNI GTAC 2 cut(s) 55, 488
RseI CAYNNNNRTG 3 cut(s) 50, 306, 625
SatI GCNGC 5 cut(s) 19, 88, 140, 143, 513
Sau3AI GATC 4 cut(s) 118, 124, 181, 277
SetI ASST 9 cut(s) 8, 33, 219, 292, 300, 328, 391, 430, 613
SfaNI GCATC 3 cut(s) 54, 153, 639
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 3 cut(s) 50, 306, 625
SphI GCATGC 1 cut(s) 630
Sse9I AATT 5 cut(s) 231, 343, 480, 542, 601
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 386, 474
TaaI ACNGT 3 cut(s) 103, 226, 578
TaqII GACCGA 1 cut(s) 369
TasI AATT 5 cut(s) 231, 343, 480, 542, 601
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 594
TscAI CASTG 2 cut(s) 141, 583
TseFI GTSAC 2 cut(s) 97, 381
TseI GCWGC 4 cut(s) 87, 139, 142, 512
Tsp45I GTSAC 2 cut(s) 97, 381
TspDTI ATGAA 6 cut(s) 70, 290, 296, 297, 403, 414
TspGWI ACGGA 3 cut(s) 219, 232, 420
TspRI CASTG 2 cut(s) 141, 583
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 1 cut(s) 601
XceI RCATGY 2 cut(s) 112, 630
XspI CTAG 2 cut(s) 386, 474
Zsp2I ATGCAT 2 cut(s) 313, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.