RchiOBHm_Chr5g0000571

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011999
Physical Location & Seq
Forward (+)
329090 .. 330845
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28210

Sequence Viewer

Length: 378 bp
ATGAGCTCATACTTTTGCAGCAACCATAAGCTTCGGAGGAATAGCATCAACATGTACTACTACAATATCTTCTTCTTCTGCTGCTGTCTCATCACAGTTTCAAGGGCGGATGATCATGATCAAGTATCAGTGCAGCAGCAAAACCCATTACACCAGTTACTCTCCAGCCGAAAAGATCTGGTGCAGATTGCTGGATATGGAGAAGAGAAGCTTTCTACAGTACTAATTACTGGCTCCGTCCATTGTGAAGAGGCTTGTAGTCTGTCCGATGATCATGAACATCAAGCTCATCAGCTTCATCTTCATGCATGGCCTGTGTCAGGGTCTGTTGAAAACGACCATTCAGCTGAAAAAGAATTGAAAAGGATATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

125

Amino Acids

14.4

Weight (kDa)

6.01

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AfaI GTAC 2 cut(s) 56, 222
AfiI CCNNNNNNNGG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 3 cut(s) 102, 332, 361
AluBI AGCT 6 cut(s) 6, 31, 211, 287, 295, 347
AluI AGCT 6 cut(s) 6, 31, 211, 287, 295, 347
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 18, 81, 133, 136
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 30, 68, 145, 148
BclI TGATCA 3 cut(s) 112, 118, 271
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 175
BisI GCNGC 4 cut(s) 19, 82, 134, 137
BlsI GCNGC 4 cut(s) 20, 83, 135, 138
BmcAI AGTACT 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 154, 235
Bse8I GATNNNNATC 1 cut(s) 117
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 154, 235
BseXI GCAGC 4 cut(s) 30, 68, 145, 148
BsgI GTGCAG 2 cut(s) 152, 203
BshFI GGCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 112, 118, 175, 271
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 313
BspHI TCATGA 2 cut(s) 115, 274
BspLI GGNNCC 1 cut(s) 235
BsrI ACTGG 2 cut(s) 154, 235
BssMI GATC 4 cut(s) 112, 118, 175, 271
Bst4CI ACNGT 2 cut(s) 97, 220
Bst6I CTCTTC 2 cut(s) 198, 243
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 4 cut(s) 115, 121, 178, 274
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 4 cut(s) 112, 118, 175, 271
BstNSI RCATGY 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 4 cut(s) 30, 68, 145, 148
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 2 cut(s) 115, 274
Csp6I GTAC 2 cut(s) 55, 221
CviAII CATG 5 cut(s) 52, 116, 275, 305, 309
CviQI GTAC 2 cut(s) 55, 221
DpnI GATC 4 cut(s) 114, 120, 177, 273
DpnII GATC 4 cut(s) 112, 118, 175, 271
Eam1104I CTCTTC 2 cut(s) 198, 243
EarI CTCTTC 2 cut(s) 198, 243
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 5 cut(s) 55, 119, 278, 308, 312
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FatI CATG 5 cut(s) 51, 115, 274, 304, 308
FbaI TGATCA 3 cut(s) 112, 118, 271
Fnu4HI GCNGC 4 cut(s) 19, 82, 134, 137
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 19, 82, 134, 137
GluI GCNGC 4 cut(s) 19, 82, 134, 137
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 5 cut(s) 55, 119, 278, 308, 312
HindIII AAGCTT 2 cut(s) 29, 209
Hpy188I TCNGA 2 cut(s) 36, 268
Hpy188III TCNNGA 2 cut(s) 116, 275
HpyCH4III ACNGT 2 cut(s) 97, 220
HpyCH4V TGCA 4 cut(s) 18, 133, 184, 308
Hsp92II CATG 5 cut(s) 55, 119, 278, 308, 312
Ksp22I TGATCA 3 cut(s) 112, 118, 271
Kzo9I GATC 4 cut(s) 112, 118, 175, 271
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 164, 167, 177, 178, 216, 306, 327
Lsp1109I GCAGC 4 cut(s) 30, 68, 145, 148
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 156
MalI GATC 4 cut(s) 114, 120, 177, 273
MboI GATC 4 cut(s) 112, 118, 175, 271
MboII GAAGA 6 cut(s) 61, 64, 67, 215, 260, 293
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 225, 356
MnlI CCTC 2 cut(s) 30, 244
Mph1103I ATGCAT 1 cut(s) 310
MslI CAYNNNNRTG 2 cut(s) 50, 303
MspA1I CMGCKG 1 cut(s) 347
NdeII GATC 4 cut(s) 112, 118, 175, 271
NlaIII CATG 5 cut(s) 55, 119, 278, 308, 312
NlaIV GGNNCC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 1 cut(s) 55
PagI TCATGA 2 cut(s) 115, 274
PciI ACATGT 1 cut(s) 51
PkrI GCNGC 4 cut(s) 20, 83, 135, 138
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 2 cut(s) 56, 222
RsaNI GTAC 2 cut(s) 55, 221
RseI CAYNNNNRTG 2 cut(s) 50, 303
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 4 cut(s) 19, 82, 134, 137
Sau3AI GATC 4 cut(s) 112, 118, 175, 271
ScaI AGTACT 1 cut(s) 222
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 8, 33, 213, 289, 297, 349
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 2 cut(s) 50, 303
Sse9I AATT 2 cut(s) 225, 356
SsiI CCGC 1 cut(s) 107
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 2 cut(s) 97, 220
TasI AATT 2 cut(s) 225, 356
TatI WGTACW 2 cut(s) 54, 220
TscAI CASTG 1 cut(s) 135
TseI GCWGC 4 cut(s) 18, 81, 133, 136
TspDTI ATGAA 3 cut(s) 287, 291, 293
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 318
XceI RCATGY 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.