Rh5BG006300

Pollen proteins Ole e I like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
462077 .. 462325
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG006300.1

Sequence Viewer

Length: 249 bp
ATGATTGATCTACCTTCCGATCTACACGCAGTTCCCAACTTGGACAAACTATGTTGCGCAAGAGTTATTCGGGTACCAAAGAACACACAGTGCAAAGCAGCATTTGTAAAGAGGCACAAGGGACTGAAATTATCATCAGTTGGTAATGGTATCAGAACTTACAGTGCTGGAAGGATAAGATTCCAGAATTTGACACCTAAGCCTCCACAAGCATGCATTAAGAAAGCAAGCAACAACAAACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.09

Weight (kDa)

10.42

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011999)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 58
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 187
Asp718I GGTACC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 73
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 7, 19
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BssMI GATC 2 cut(s) 7, 19
Bst4CI ACNGT 2 cut(s) 90, 164
BstC8I GCNNGC 2 cut(s) 214, 229
BstDEI CTNAG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 10, 22
BstMBI GATC 2 cut(s) 7, 19
BstNSI RCATGY 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 110
BtsIMutI CAGTG 2 cut(s) 95, 169
Cac8I GCNNGC 2 cut(s) 214, 229
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 74
CviAII CATG 1 cut(s) 213
CviJI RGCY 1 cut(s) 202
CviKI_1 RGCY 1 cut(s) 202
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 9, 21
DpnII GATC 2 cut(s) 7, 19
DraIII CACNNNGTG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 218
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 52, 214
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
FspI TGCGCA 1 cut(s) 58
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 19, 155
Hpy188III TCNNGA 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 24, 165
HpyCH4III ACNGT 2 cut(s) 90, 164
HpyCH4V TGCA 2 cut(s) 93, 216
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 57
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 7, 19
LpnPI CCDG 2 cut(s) 153, 197
Lsp1109I GCAGC 1 cut(s) 110
MalI GATC 2 cut(s) 9, 21
MboI GATC 2 cut(s) 7, 19
MluCI AATT 2 cut(s) 128, 187
MnlI CCTC 2 cut(s) 105, 213
Mph1103I ATGCAT 1 cut(s) 218
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 211
NdeII GATC 2 cut(s) 7, 19
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 75
NsbI TGCGCA 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 1 cut(s) 216
PaeI GCATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 75
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 7, 19
SetI ASST 2 cut(s) 16, 199
SmiMI CAYNNNNRTG 1 cut(s) 211
SphI GCATGC 1 cut(s) 216
Sse9I AATT 2 cut(s) 128, 187
TaaI ACNGT 2 cut(s) 90, 164
TasI AATT 2 cut(s) 128, 187
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 95, 169
TseI GCWGC 1 cut(s) 98
TspRI CASTG 2 cut(s) 95, 169
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 216
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.