Rh5CG005000

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011999
Physical Location & Seq
Forward (+)
347513 .. 349893
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG005000.1

Sequence Viewer

Length: 660 bp
ATGAGCTCATTCTTTTGCAGCAACCATAAGCTTCGGAGGAATAGCATCAACATGTACTACTACAATATCTTCTTCTTCTGCTGCTGTCTCATCACAGTTTCAAGGGCGGATGATCATTATCAAGTATCAGTGCAGCAGCAAAACCCATTACACCAGTTACTCTCCAGCCGAAAAGATCTGGTGCAGATTGCTGGATATGGAGAAGAGAAGCTTTCTACAGTACTAATTACTGGCTCCGTCCATTGTGAAGAGGCTTGTAGTCTGTCCGATGATCATGAACATCAAGCTCATCAGCTTCATCTTCATGCATGGCCTGTGTCAGGTGCTGTGGTGTCTGTCAATTGCCGTGTGGGTGGGAGAAAAAGGAAATTAAGTCGGTCACAAGGTGTCACAGATGAATATGGAGATTTCATGATTGATCTACCTTCCGATCTACACGCAGTTCCCAACTTGGACAAACTATGTTGCGCAAGAGTTATTCGGGTACCAAAGAACACACAGTGCAAAGCAGCATTTGTAAAGAGGCACAAGGGACTGAAATTATCATCAGTTGGTAATGGTATCAGAACTTACAGTGCTGGAAGGATAAGATTCCAGAATTTGACACCTAAGCCTCCACAAGCATGCATTAAGAAAGCAAGCAACAACAAACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

219

Amino Acids

24.65

Weight (kDa)

9.38

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 76 - 171 3.1e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011999)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40113 AT4G17215 AT5G47635
fragaria_vesca FvH4_3g00370
malus_domestica MD05G1360900.v1.1 MD10G1338600.v1.1
prunus_persica Prupe.4G004300_v2.0.a1
pyrus_communis pycom05g32770
rosa_chinensis RchiOBHm_Chr5g0000571
rosa_laevigata RLG00000030876
rosa_multiflora Rmu_sc0003699.1_g000003 Rmu_sc0008807.1_g000003
rosa_roxburghii Rroxscaffold_1G00075640
rosa_rugosa Rorug04G0384800
rosa_samantha Rh5AG004600 Rh5BG006300 Rh5CG005000 Rh5DG005000
rosa_wichuraiana Rw5G000460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 469
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 484
AciI CCGC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 598
AdeI CACNNNGTG 2 cut(s) 386, 501
AfaI GTAC 3 cut(s) 56, 222, 486
AfiI CCNNNNNNNGG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 102
AluBI AGCT 5 cut(s) 6, 31, 211, 287, 295
AluI AGCT 5 cut(s) 6, 31, 211, 287, 295
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 5 cut(s) 18, 81, 133, 136, 509
ApoI RAATTY 1 cut(s) 598
Asp718I GGTACC 1 cut(s) 484
AspLEI GCGC 1 cut(s) 470
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 5 cut(s) 30, 68, 145, 148, 521
BceAI ACGGC 1 cut(s) 330
BclI TGATCA 2 cut(s) 112, 271
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 175
BisI GCNGC 5 cut(s) 19, 82, 134, 137, 510
BlsI GCNGC 5 cut(s) 20, 83, 135, 138, 511
BmcAI AGTACT 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 235, 486
BmsI GCATC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 154, 235
Bse8I GATNNNNATC 1 cut(s) 117
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 154, 235
BseXI GCAGC 5 cut(s) 30, 68, 145, 148, 521
BsgI GTGCAG 2 cut(s) 152, 203
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 112, 175, 271, 418, 430
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 313
BspHI TCATGA 2 cut(s) 274, 411
BspLI GGNNCC 2 cut(s) 235, 486
BspT107I GGYRCC 1 cut(s) 484
BsrI ACTGG 2 cut(s) 154, 235
BssMI GATC 5 cut(s) 112, 175, 271, 418, 430
Bst4CI ACNGT 4 cut(s) 97, 220, 501, 575
Bst6I CTCTTC 2 cut(s) 198, 243
BstC8I GCNNGC 2 cut(s) 625, 640
BstDEI CTNAG 1 cut(s) 609
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 5 cut(s) 115, 178, 274, 421, 433
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 5 cut(s) 112, 175, 271, 418, 430
BstNSI RCATGY 2 cut(s) 55, 627
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 5 cut(s) 30, 68, 145, 148, 521
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 3 cut(s) 135, 506, 580
Cac8I GCNNGC 2 cut(s) 625, 640
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 2 cut(s) 274, 411
CfoI GCGC 1 cut(s) 470
Csp6I GTAC 3 cut(s) 55, 221, 485
CviAII CATG 6 cut(s) 52, 275, 305, 309, 412, 624
CviQI GTAC 3 cut(s) 55, 221, 485
DdeI CTNAG 1 cut(s) 609
DpnI GATC 5 cut(s) 114, 177, 273, 420, 432
DpnII GATC 5 cut(s) 112, 175, 271, 418, 430
DraIII CACNNNGTG 2 cut(s) 386, 501
Eam1104I CTCTTC 2 cut(s) 198, 243
EarI CTCTTC 2 cut(s) 198, 243
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoT22I ATGCAT 2 cut(s) 310, 629
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 6 cut(s) 55, 278, 308, 312, 415, 627
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 546
FatI CATG 6 cut(s) 51, 274, 304, 308, 411, 623
FbaI TGATCA 2 cut(s) 112, 271
Fnu4HI GCNGC 5 cut(s) 19, 82, 134, 137, 510
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 19, 82, 134, 137, 510
FspI TGCGCA 1 cut(s) 469
GlaI GCGC 1 cut(s) 469
GluI GCNGC 5 cut(s) 19, 82, 134, 137, 510
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 313
HhaI GCGC 1 cut(s) 470
Hin1II CATG 6 cut(s) 55, 278, 308, 312, 415, 627
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HindIII AAGCTT 2 cut(s) 29, 209
HinfI GANTC 1 cut(s) 591
Hpy188I TCNGA 4 cut(s) 36, 268, 430, 566
Hpy188III TCNNGA 3 cut(s) 275, 412, 595
HpyAV CCTTC 2 cut(s) 435, 576
HpyCH4III ACNGT 4 cut(s) 97, 220, 501, 575
HpyCH4V TGCA 6 cut(s) 18, 133, 184, 308, 504, 627
HpyF3I CTNAG 1 cut(s) 609
Hsp92II CATG 6 cut(s) 55, 278, 308, 312, 415, 627
HspAI GCGC 1 cut(s) 468
KpnI GGTACC 1 cut(s) 488
Ksp22I TGATCA 2 cut(s) 112, 271
Kzo9I GATC 5 cut(s) 112, 175, 271, 418, 430
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 164, 167, 177, 178, 216, 306, 327, 564, 608
Lsp1109I GCAGC 5 cut(s) 30, 68, 145, 148, 521
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 156, 378, 388
MalI GATC 5 cut(s) 114, 177, 273, 420, 432
MboI GATC 5 cut(s) 112, 175, 271, 418, 430
MboII GAAGA 6 cut(s) 61, 64, 67, 215, 260, 293
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 225, 340, 368, 539, 598
MnlI CCTC 4 cut(s) 30, 244, 516, 624
Mph1103I ATGCAT 2 cut(s) 310, 629
MseI TTAA 2 cut(s) 371, 630
MslI CAYNNNNRTG 3 cut(s) 50, 303, 622
MunI CAATTG 1 cut(s) 340
NdeII GATC 5 cut(s) 112, 175, 271, 418, 430
NlaIII CATG 6 cut(s) 55, 278, 308, 312, 415, 627
NlaIV GGNNCC 2 cut(s) 235, 486
NmuCI GTSAC 2 cut(s) 378, 388
NsbI TGCGCA 1 cut(s) 469
NsiI ATGCAT 2 cut(s) 310, 629
NspI RCATGY 2 cut(s) 55, 627
PaeI GCATGC 1 cut(s) 627
PagI TCATGA 2 cut(s) 274, 411
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 1 cut(s) 591
PkrI GCNGC 5 cut(s) 20, 83, 135, 138, 511
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 235, 486
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 3 cut(s) 56, 222, 486
RsaNI GTAC 3 cut(s) 55, 221, 485
RseI CAYNNNNRTG 3 cut(s) 50, 303, 622
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 371, 630
SatI GCNGC 5 cut(s) 19, 82, 134, 137, 510
Sau3AI GATC 5 cut(s) 112, 175, 271, 418, 430
ScaI AGTACT 1 cut(s) 222
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 33, 213, 289, 297, 325, 388, 427, 610
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 3 cut(s) 50, 303, 622
SphI GCATGC 1 cut(s) 627
Sse9I AATT 5 cut(s) 225, 340, 368, 539, 598
SsiI CCGC 1 cut(s) 107
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 4 cut(s) 97, 220, 501, 575
TaqII GACCGA 1 cut(s) 366
TasI AATT 5 cut(s) 225, 340, 368, 539, 598
TatI WGTACW 2 cut(s) 54, 220
TfiI GAWTC 1 cut(s) 591
Tru1I TTAA 2 cut(s) 371, 630
Tru9I TTAA 2 cut(s) 371, 630
TscAI CASTG 3 cut(s) 135, 506, 580
TseFI GTSAC 2 cut(s) 378, 388
TseI GCWGC 5 cut(s) 18, 81, 133, 136, 509
Tsp45I GTSAC 2 cut(s) 378, 388
TspDTI ATGAA 5 cut(s) 287, 291, 293, 400, 411
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 3 cut(s) 135, 506, 580
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 1 cut(s) 598
XceI RCATGY 2 cut(s) 55, 627
ZrmI AGTACT 1 cut(s) 222
Zsp2I ATGCAT 2 cut(s) 310, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.