Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Reverse (-)

17000419 .. 17002528

Gene Structure 2110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGATTCGAATAGTAACAACACGAAATCCATAAAGAGAAAAGTTGTCGACCAACTTGTCGAAGGCTATGAATTCGCTACTCAGCTTCAGCTTCTCCTTTCTCATCAACACTCTAACCAGTACCACATCGATGAGACCCGTCTTGTTTCCGGGTCGGGTTCAGTTTCCGGTGGTCCAGATCCCGTTGATGAGCTCATGTCTAAGATCTTGGGATCTTTCCATAAAACTATATCGGTTCTTGATTCTTTTGATCCCGTCGCCGTCTCTGTCCCCATCGCCGTCGAGGGTTCATGGAATGCTTCATGTGGGGATGATTCGGCGACTCCGGTGAGTTGCAACGGTGGAGATTCCGGTGAGAGTAAGAAGAAGAGATTAGGGGTTGGTAAGGGTAAAAGAGGATGCTACACTAGAAAGACGAGATCACATACAAGGATCGTGGAAGCTAAAAGTTCTGAAGACAGATATGCTTGGAGGAAATATGGACAAAAGGAGATTCTTAATACCACATTCCCAAGAAGTTACTTTAGATGCACACACAAGCCAACGCAAGGATGCAAAGCAACAAAGCAAGTTCAGAAACAGGATCAAGATTCTGAGATGTTCCAAATCACATACATTGGCTACCACACATGCACTGCCAATGACCAAACGCACGCGAAGACCGAGCCTTTTGATCAAGAAATCATTATGGATTCGGAAAAGACATTGGCTGCTAGCACTGCTCAGAACCATGTCAATGCTATGGTGCAAGAGCAAGAGAACAACACCAGCAGTGTGACAGCAATAGACGCAGGCATGGTTAAGGAGGAACAAAATAACAATGGTGATCAGAGTAAAGATTATTATGAGGGCTCTTCGACAGGTGAGGACTTGTCATTGGTTTGGCAAGAGACGATGATGTTTGATGATCATCAAAATCACTACTATTGTGGTGAAACCAGTACTACTTCTCATCAATTTGGTTTCATCGACAACGATGATCAGTTTTCCTCCTTCTTCGACTCATATTGTGCTGATTATGAAAGAACAAGTGCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

346

Amino Acids

38.64

Weight (kDa)

5.23

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	152 - 211	2.6e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	656
AclWI	GGATC	5 cut(s)	173, 220, 245, 440, 591
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	71, 474
AfaI	GTAC	2 cut(s)	122, 943
AfiI	CCNNNNNNNGG	1 cut(s)	548
AluBI	AGCT	4 cut(s)	85, 91, 193, 443
AluI	AGCT	4 cut(s)	85, 91, 193, 443
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	3 cut(s)	128, 268, 884
AlwI	GGATC	5 cut(s)	173, 220, 245, 440, 591
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	5 cut(s)	340, 365, 836, 875, 944
AsuII	TTCGAA	1 cut(s)	8
AsuNHI	GCTAGC	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	195, 854
BbsI	GAAGAC	2 cut(s)	462, 665
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	2 cut(s)	245, 263
BclI	TGATCA	4 cut(s)	673, 826, 907, 979
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	128, 268, 884
BfaI	CTAG	2 cut(s)	408, 714
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	712
BmcAI	AGTACT	1 cut(s)	943
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	389, 518, 542
BmtI	GCTAGC	1 cut(s)	717
BpiI	GAAGAC	2 cut(s)	462, 665
Bpu14I	TTCGAA	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	909
BsaI	GGTCTC	1 cut(s)	128
BsaWI	WCCGGW	3 cut(s)	167, 325, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	118, 939
Bse8I	GATNNNNATC	1 cut(s)	909
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	3 cut(s)	316, 404, 557
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	95, 585, 737
BseNI	ACTGG	2 cut(s)	118, 939
BseXI	GCAGC	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	150, 168, 326, 351
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	3 cut(s)	128, 268, 884
BsmBI	CGTCTC	2 cut(s)	268, 884
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	195, 854
BspCNI	CTCAG	3 cut(s)	94, 586, 736
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	656
BspOI	GCTAGC	1 cut(s)	717
BspPI	GGATC	5 cut(s)	173, 220, 245, 440, 591
BspQI	GCTCTTC	1 cut(s)	859
BspT104I	TTCGAA	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	118, 939
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	2 cut(s)	362, 859
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	654, 715, 793
BstDEI	CTNAG	4 cut(s)	81, 201, 594, 723
BstF5I	GGATG	3 cut(s)	316, 404, 557
BstFNI	CGCG	1 cut(s)	656
BstMAI	GTCTC	3 cut(s)	128, 268, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	719, 788
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	2 cut(s)	462, 665
BstX2I	RGATCY	3 cut(s)	178, 204, 212
BstYI	RGATCY	3 cut(s)	178, 204, 212
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	316, 404, 557
BtsI	GCAGTG	3 cut(s)	633, 717, 778
BtsIMutI	CAGTG	3 cut(s)	633, 717, 778
Cac8I	GCNNGC	3 cut(s)	654, 715, 793
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	2 cut(s)	121, 942
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	6 cut(s)	196, 291, 303, 630, 731, 796
CviQI	GTAC	2 cut(s)	121, 942
DdeI	CTNAG	4 cut(s)	81, 201, 594, 723
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	362, 859
EarI	CTCTTC	2 cut(s)	362, 859
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	195, 854
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	71, 474
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	71
EcoT38I	GRGCYC	2 cut(s)	195, 854
Esp3I	CGTCTC	2 cut(s)	268, 884
FaeI	CATG	6 cut(s)	199, 294, 306, 633, 734, 799
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	6 cut(s)	195, 290, 302, 629, 730, 795
FbaI	TGATCA	4 cut(s)	673, 826, 907, 979
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	3 cut(s)	323, 411, 564
FriOI	GRGCYC	2 cut(s)	195, 854
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	2 cut(s)	408, 714
GluI	GCNGC	1 cut(s)	711
HapII	CCGG	4 cut(s)	150, 168, 326, 351
HgaI	GACGC	1 cut(s)	797
Hin1II	CATG	6 cut(s)	199, 294, 306, 633, 734, 799
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	9 cut(s)	5, 242, 314, 322, 347, 493, 590, 692, 1001
HpaII	CCGG	4 cut(s)	150, 168, 326, 351
HphI	GGTGA	5 cut(s)	340, 365, 836, 875, 944
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	6 cut(s)	454, 576, 595, 697, 726, 831
Hpy188III	TCNNGA	4 cut(s)	176, 239, 587, 677
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	260, 284
HpyAV	CCTTC	2 cut(s)	56, 1003
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	336, 531, 555, 633, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	719, 788
HpyF3I	CTNAG	4 cut(s)	81, 201, 594, 723
Hsp92II	CATG	6 cut(s)	199, 294, 306, 633, 734, 799
Ksp22I	TGATCA	4 cut(s)	673, 826, 907, 979
LguI	GCTCTTC	1 cut(s)	859
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	3 cut(s)	389, 518, 542
MaeI	CTAG	2 cut(s)	408, 714
MaeIII	GTNAC	3 cut(s)	14, 518, 775
MboII	GAAGA	6 cut(s)	376, 379, 467, 670, 846, 988
MflI	RGATCY	3 cut(s)	178, 204, 212
MhlI	GDGCHC	2 cut(s)	195, 854
MluCI	AATT	2 cut(s)	71, 956
MlyI	GAGTC	2 cut(s)	316, 995
MnlI	CCTC	7 cut(s)	277, 389, 465, 799, 841, 859, 1000
MseI	TTAA	2 cut(s)	498, 801
MslI	CAYNNNNRTG	2 cut(s)	129, 735
MspI	CCGG	4 cut(s)	150, 168, 326, 351
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	719, 788
NciI	CCSGG	1 cut(s)	151
NheI	GCTAGC	1 cut(s)	713
NlaIII	CATG	6 cut(s)	199, 294, 306, 633, 734, 799
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	1 cut(s)	633
NspV	TTCGAA	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	7 cut(s)	5, 242, 314, 347, 493, 590, 692
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	2 cut(s)	316, 995
PpsI	GAGTC	2 cut(s)	316, 995
Psp124BI	GAGCTC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	3 cut(s)	178, 204, 212
RsaI	GTAC	2 cut(s)	122, 943
RsaNI	GTAC	2 cut(s)	121, 942
RseI	CAYNNNNRTG	2 cut(s)	129, 735
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	859
SaqAI	TTAA	2 cut(s)	498, 801
SatI	GCNGC	1 cut(s)	711
Sau96I	GGNCC	1 cut(s)	173
ScaI	AGTACT	1 cut(s)	943
SchI	GAGTC	2 cut(s)	316, 995
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	195, 854
SetI	ASST	5 cut(s)	87, 93, 195, 445, 865
SfaNI	GCATC	3 cut(s)	389, 518, 542
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	129, 735
Sse9I	AATT	2 cut(s)	71, 956
SspMI	CTAG	2 cut(s)	408, 714
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	8 cut(s)	8, 48, 60, 129, 282, 857, 969, 999
TaqII	GACCGA	1 cut(s)	677
TasI	AATT	2 cut(s)	71, 956
TatI	WGTACW	1 cut(s)	941
TfiI	GAWTC	7 cut(s)	5, 242, 314, 347, 493, 590, 692
Tru1I	TTAA	2 cut(s)	498, 801
Tru9I	TTAA	2 cut(s)	498, 801
TscAI	CASTG	3 cut(s)	640, 724, 778
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	5 cut(s)	84, 279, 291, 955, 1035
TspRI	CASTG	3 cut(s)	640, 724, 778
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	408, 714
ZrmI	AGTACT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.