Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Forward (+)

59860200 .. 59861147

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG375700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGGAGCAAATTCTAACCATCAGCGAAACCAAATCTCATAATGACAGCTGTGACATCCTTTCGGTTAGTAGGAAAGGAAAAGAGGGGGTTGGGGTGCGGTTGGAGGAGTCTCCAGAGGAAGGCAGCTCTGCCGGTGAGAGCAAGAAGAGGCCAGGTTCAGAGGATCAGAAGGGTTCCAACAAGCGAAGAAAGAGTCCAGAGTCATGGACAGTGGTTTCAAACACACTTGATGATGGTCAGGTTTGGAGGAAGTATGGGCAGAAGGAAATCCTGGGTTCTCCATATCCAAGGGCTTACTTCAGATGTACCCGCAAGTATGATCAAGGTTGCCAAGCAACCAAACGAGTCCAACAAGTCCAAGACACCCCAAAGGAGTACGAAATTACCTACAAAGGAAACCACACGTGCGTAAACATGATGATGATCATGGGAGCCTCCGATCCTGCTACTTGGCCGACCCCAGTTTGCAGTAAGAAAGAACATGGCGATCTCTCTAGCTCACTGTCCCTGATTCCTTTCGTTCCCGAGAAGAAAGAAGAGTGCAAGGAGGGGACGACGGCGAGTGGTCTGGTGGGCAACGTTAACGATACTAGTGATATGTGGACGGGTTTTGAGTCGCCGGAGTTTGTGTTCCCGGATTTAGGGACTGAACAGTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

221

Amino Acids

24.57

Weight (kDa)

5.41

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	78 - 137	2.3e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AciI	CCGC	2 cut(s)	100, 313
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	2 cut(s)	174, 437
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	286
AcvI	CACGTG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	310, 380
AfiI	CCNNNNNNNGG	2 cut(s)	122, 644
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	2 cut(s)	154, 273
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
AluBI	AGCT	3 cut(s)	51, 129, 501
AluI	AGCT	3 cut(s)	51, 129, 501
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	174, 437
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	152, 455
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	12
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	2 cut(s)	149, 651
AvaI	CYCGRG	1 cut(s)	527
BbrPI	CACGTG	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	2 cut(s)	29, 230
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	2 cut(s)	156, 275
BclI	TGATCA	2 cut(s)	322, 426
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	498, 594
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	156, 275, 638
BmeT110I	CYCGRG	1 cut(s)	527
BmiI	GGNNCC	2 cut(s)	178, 436
BmrFI	CCNGG	3 cut(s)	156, 275, 638
BmrI	ACTGGG	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	274, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 644
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	156, 275
BseDI	CCNNGG	2 cut(s)	274, 290
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	122, 644
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	2 cut(s)	20, 122
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	2 cut(s)	154, 457
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	3 cut(s)	135, 623, 638
BslFI	GGGAC	3 cut(s)	493, 568, 661
BslI	CCNNNNNNNGG	2 cut(s)	122, 644
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	3 cut(s)	493, 568, 661
BsnI	GGCC	2 cut(s)	154, 457
BsoBI	CYCGRG	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	166, 322, 426, 442, 490
BspACI	CCGC	2 cut(s)	100, 313
BspANI	GGCC	2 cut(s)	154, 457
BspLI	GGNNCC	2 cut(s)	178, 436
BspPI	GGATC	2 cut(s)	174, 437
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	274, 290
BssMI	GATC	5 cut(s)	166, 322, 426, 442, 490
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	156, 275
Bst4CI	ACNGT	3 cut(s)	214, 507, 657
Bst6I	CTCTTC	2 cut(s)	143, 534
BstBAI	YACGTR	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	5 cut(s)	169, 325, 429, 445, 493
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	166, 322, 426, 442, 490
BstNI	CCWGG	2 cut(s)	156, 275
BstSCI	CCNGG	3 cut(s)	154, 273, 636
BstV1I	GCAGC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	154, 457
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	219, 503
Cfr10I	RCCGGY	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	309, 379
CviAII	CATG	5 cut(s)	207, 418, 430, 485, 663
CviJI	RGCY	7 cut(s)	51, 129, 154, 296, 437, 457, 501
CviKI_1	RGCY	7 cut(s)	51, 129, 154, 296, 437, 457, 501
CviQI	GTAC	2 cut(s)	309, 379
DpnI	GATC	5 cut(s)	168, 324, 428, 444, 492
DpnII	GATC	5 cut(s)	166, 322, 426, 442, 490
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	143, 534
EarI	CTCTTC	2 cut(s)	143, 534
Eco130I	CCWWGG	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	286
Eco72I	CACGTG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	154, 273
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	5 cut(s)	210, 421, 433, 488, 666
FaqI	GGGAC	3 cut(s)	493, 568, 661
FatI	CATG	5 cut(s)	206, 417, 429, 484, 662
FauI	CCCGC	1 cut(s)	320
FbaI	TGATCA	2 cut(s)	322, 426
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	498, 594
GluI	GCNGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	154, 457
HapII	CCGG	3 cut(s)	135, 623, 638
Hin1II	CATG	5 cut(s)	210, 421, 433, 488, 666
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	6 cut(s)	110, 196, 203, 348, 514, 617
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	3 cut(s)	135, 623, 638
HphI	GGTGA	2 cut(s)	149, 651
Hpy166II	GTNNAC	3 cut(s)	415, 586, 606
Hpy188I	TCNGA	4 cut(s)	163, 171, 305, 442
Hpy188III	TCNNGA	3 cut(s)	116, 200, 527
Hpy8I	GTNNAC	3 cut(s)	415, 586, 606
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	116, 166, 259
HpyCH4III	ACNGT	3 cut(s)	214, 507, 657
HpyCH4IV	ACGT	2 cut(s)	407, 582
HpyCH4V	TGCA	2 cut(s)	471, 546
HpySE526I	ACGT	2 cut(s)	407, 582
Hsp92II	CATG	5 cut(s)	210, 421, 433, 488, 666
Ksp22I	TGATCA	2 cut(s)	322, 426
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	5 cut(s)	166, 322, 426, 442, 490
LmnI	GCTCC	2 cut(s)	7, 434
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	498, 594
MaeII	ACGT	2 cut(s)	407, 582
MaeIII	GTNAC	2 cut(s)	53, 657
MalI	GATC	5 cut(s)	168, 324, 428, 444, 492
MboI	GATC	5 cut(s)	166, 322, 426, 442, 490
MboII	GAAGA	4 cut(s)	160, 201, 544, 551
MluCI	AATT	2 cut(s)	12, 384
MlyI	GAGTC	5 cut(s)	119, 205, 212, 357, 626
MmeI	TCCRAC	3 cut(s)	84, 204, 376
MnlI	CCTC	8 cut(s)	79, 100, 112, 144, 157, 243, 448, 544
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	3 cut(s)	135, 623, 638
MspR9I	CCNGG	3 cut(s)	156, 275, 638
MvaI	CCWGG	2 cut(s)	156, 275
NciI	CCSGG	1 cut(s)	638
NdeII	GATC	5 cut(s)	166, 322, 426, 442, 490
NlaIII	CATG	5 cut(s)	210, 421, 433, 488, 666
NlaIV	GGNNCC	2 cut(s)	178, 436
NmuCI	GTSAC	2 cut(s)	53, 657
PfeI	GAWTC	1 cut(s)	514
PfoI	TCCNGGA	1 cut(s)	636
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	5 cut(s)	118, 204, 211, 356, 625
PmaCI	CACGTG	1 cut(s)	408
PmlI	CACGTG	1 cut(s)	408
PpsI	GAGTC	5 cut(s)	118, 204, 211, 356, 625
Ppu21I	YACGTR	1 cut(s)	408
Psp1406I	AACGTT	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	154, 273
PspCI	CACGTG	1 cut(s)	408
PspGI	CCWGG	2 cut(s)	154, 273
PspN4I	GGNNCC	2 cut(s)	178, 436
PvuII	CAGCTG	1 cut(s)	51
RsaI	GTAC	2 cut(s)	310, 380
RsaNI	GTAC	2 cut(s)	309, 379
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	5 cut(s)	166, 322, 426, 442, 490
SchI	GAGTC	5 cut(s)	119, 205, 212, 357, 626
ScrFI	CCNGG	3 cut(s)	156, 275, 638
SetI	ASST	9 cut(s)	53, 131, 160, 246, 331, 392, 410, 503, 585
SmiMI	CAYNNNNRTG	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	2 cut(s)	12, 384
SsiI	CCGC	2 cut(s)	100, 313
SspMI	CTAG	2 cut(s)	498, 594
StyD4I	CCNGG	3 cut(s)	154, 273, 636
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	3 cut(s)	214, 507, 657
TaiI	ACGT	2 cut(s)	410, 585
TasI	AATT	2 cut(s)	12, 384
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	219, 510
TseFI	GTSAC	2 cut(s)	53, 657
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	2 cut(s)	53, 657
TspRI	CASTG	2 cut(s)	219, 510
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	2 cut(s)	498, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.