Rorug01G0371900
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
48564384 .. 48568290
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371900.1

Sequence Viewer

Length: 1254 bp
ATGATGACAGCCACATCAACGGCGCTAATCCAGCGCGTGTGCTCCGTCCCCCTCGCGCGTGCCGTCCGTACTCGCGCCTTAGCCACCAACACCACCACCACGAGCCTCTCCACCACTCCCACTCCCACTCGCTCCTCGCCGGCCGACTCGCGCGTCCTGCTCGGCTTGTCCGAACCGGAACTCCAGCAGCTCGCCCTCGACTTCAGTCAGCAAGGCTACAGAGGCAAGCAGCTTCATCATCTCATTTACAAAAGAAAGATTAAAGACATTCAGGATTTCAGTCAAGTGCCTCTGGCATTCAGGAATGAGCTTGAGGAAGCTGGATGGAAGGTTGGGAGGTCACCTATTTACAATACTGTTACTGCTGCTGATGGCACTGTTAAGTTATTGATAAAGTTGGAGGATAACCGATTGATTGAAACTGTTGGCATACCGGTTCAAGATGAGAAGGGTTTGATGCGCCTTACAGCATGTGTCTCATCACAGGTGGGATGCCCTCTGCGTTGCTCTTTTTGCGCAACAGGAAAAGGAGGCTTTTCAAGGAACCTTAAGAGGCATGAAATTGTTGAGCAGGTTTTGGCTATTGAGGAGATATTCCAGCATAGGGTGACTAATGTAGTGTTCATGGGAATGGGTGAACCAATGATGAACCTCAAGTCTGTACTTGAAGCACACCAGTGCTTGAATAAGGATGTGCAAATTGGGCAAAGAATGATGACAATTTCTACTGTGGGGGTTCCAAATACAATTAAAAGGCTGGCATCTCACAAGCTTCAGTCAACATTGGCTGTCAGCCTGCATGCTCCTAACCAGAAACTTAGGGAAACAATTGTACCAAGTGCGAAAGCATATCCTCTAAGTGCACTTATGAAGGATTGCAGTGAATATTTCAATGAAACAAATAGACGTGTTTCCTTTGAGTATGCCCTTTTAGCTGGAGTCAATGATGCAGTAGAGCACGCATGTGAACTTGCAGAGCTACTTCATCAGTGGGGACGAGGTTATCATGTGAACTTGATACCTTTTAATCCAATAGAAGGTTCTGAGTATAAGCGTCCATCCAAGAGAGCTGTCCAGGCATTTGCTGCTGCTCTGGAGTCCGGTAAAATAACTGTTAGTACACGTCAAACAAGGGGCCTTGATGCAGATGCAGCTTGTGGCCAGCTAAGAAACAAGTTCCAGAAGAGTCCTTTGGTCTCCGAGTCTGACAACTTACAACCTGAACCTGAAGCAGATGTTGCAGTTGCATGTTAG

Protein Analysis

417

Amino Acids

45.97

Weight (kDa)

8.93

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 160 - 324 2.7e-15 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
Acc16I TGCGCA 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 562
AccII CGCG 6 cut(s) 36, 56, 58, 75, 151, 153
AcoI YGGCCR 2 cut(s) 141, 1159
AcuI CTGAAG 3 cut(s) 187, 758, 1248
AfaI GTAC 4 cut(s) 70, 663, 834, 1120
AfiI CCNNNNNNNGG 2 cut(s) 604, 1037
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 2 cut(s) 907, 1121
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 6 cut(s) 419, 440, 540, 668, 685, 892
AjiI CACGTC 2 cut(s) 908, 1124
AjnI CCWGG 1 cut(s) 1074
AjuI GAANNNNNNNTTGG 4 cut(s) 1024, 1056, 1175, 1207
AleI CACNNNNGTG 2 cut(s) 676, 963
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
Alw21I GWGCWC 3 cut(s) 44, 865, 960
Alw26I GTCTC 2 cut(s) 481, 1201
Alw44I GTGCAC 1 cut(s) 861
AoxI GGCC 3 cut(s) 141, 1135, 1159
ApaLI GTGCAC 1 cut(s) 861
ApeKI GCWGC 6 cut(s) 187, 229, 365, 1085, 1088, 1151
AsiGI ACCGGT 1 cut(s) 433
AspLEI GCGC 7 cut(s) 25, 36, 58, 77, 153, 462, 518
AspS9I GGNCC 1 cut(s) 1135
AsuHPI GGTGA 3 cut(s) 333, 619, 647
BaeGI GKGCMC 1 cut(s) 865
BaeI ACNNNNGTAYC 2 cut(s) 816, 849
BalI TGGCCA 1 cut(s) 1161
BauI CACGAG 1 cut(s) 100
Bbv12I GWGCWC 3 cut(s) 44, 865, 960
BbvI GCAGC 6 cut(s) 199, 241, 352, 1072, 1075, 1163
BccI CCATC 3 cut(s) 318, 365, 1066
BceAI ACGGC 2 cut(s) 36, 47
BciT130I CCWGG 1 cut(s) 1076
BcoDI GTCTC 2 cut(s) 481, 1201
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 6 cut(s) 188, 230, 366, 1086, 1089, 1152
BlsI GCNGC 6 cut(s) 189, 231, 367, 1087, 1090, 1153
Bme1390I CCNGG 1 cut(s) 1076
BmgBI CACGTC 2 cut(s) 908, 1124
BmgT120I GGNCC 1 cut(s) 1135
BmiI GGNNCC 3 cut(s) 545, 738, 1136
BmrFI CCNGG 1 cut(s) 1076
BmsI GCATC 6 cut(s) 447, 482, 770, 937, 1132, 1138
BoxI GACNNNNGTC 1 cut(s) 204
BpmI CTGGAG 3 cut(s) 167, 957, 1115
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 332, 638
BsaI GGTCTC 1 cut(s) 1201
BsaWI WCCGGW 3 cut(s) 175, 433, 1100
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 165, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 604, 1037
Bse118I RCCGGY 2 cut(s) 139, 433
Bse1I ACTGG 1 cut(s) 676
BseBI CCWGG 1 cut(s) 1076
BseGI GGATG 4 cut(s) 329, 497, 697, 1058
BseLI CCNNNNNNNGG 2 cut(s) 604, 1037
BseMII CTCAG 1 cut(s) 1035
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 2 cut(s) 124, 602
BseSI GKGCMC 1 cut(s) 865
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 6 cut(s) 199, 241, 352, 1072, 1075, 1163
Bsh1236I CGCG 6 cut(s) 36, 56, 58, 75, 151, 153
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 143, 1137, 1161
BshTI ACCGGT 1 cut(s) 433
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 44, 865, 960
BsiSI CCGG 4 cut(s) 140, 176, 434, 1101
BslFI GGGAC 2 cut(s) 32, 1008
BslI CCNNNNNNNGG 2 cut(s) 604, 1037
BsmAI GTCTC 2 cut(s) 481, 1201
BsmFI GGGAC 2 cut(s) 32, 1008
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 3 cut(s) 143, 1137, 1161
Bso31I GGTCTC 1 cut(s) 1201
Bsp1286I GDGCHC 3 cut(s) 44, 865, 960
BspANI GGCC 3 cut(s) 143, 1137, 1161
BspCNI CTCAG 1 cut(s) 1036
BspFNI CGCG 6 cut(s) 36, 56, 58, 75, 151, 153
BspLI GGNNCC 3 cut(s) 545, 738, 1136
BspMI ACCTGC 1 cut(s) 562
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 1201
BsrFI RCCGGY 2 cut(s) 139, 433
BsrI ACTGG 1 cut(s) 676
BssAI RCCGGY 2 cut(s) 139, 433
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 1076
Bst4CI ACNGT 5 cut(s) 358, 379, 424, 730, 1114
Bst6I CTCTTC 1 cut(s) 1178
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 2 cut(s) 1085, 1238
BstC8I GCNNGC 9 cut(s) 60, 141, 192, 227, 759, 797, 801, 960, 1163
BstDEI CTNAG 5 cut(s) 79, 818, 857, 1044, 1166
BstEII GGTNACC 1 cut(s) 339
BstF5I GGATG 4 cut(s) 329, 497, 697, 1058
BstFNI CGCG 6 cut(s) 36, 56, 58, 75, 151, 153
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 7 cut(s) 25, 36, 58, 77, 153, 462, 518
BstMAI GTCTC 2 cut(s) 481, 1201
BstMCI CGRYCG 1 cut(s) 144
BstNI CCWGG 1 cut(s) 1076
BstNSI RCATGY 4 cut(s) 474, 803, 966, 1251
BstPAI GACNNNNGTC 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 1074
BstSFI CTRYAG 1 cut(s) 217
BstSLI GKGCMC 1 cut(s) 865
BstUI CGCG 6 cut(s) 36, 56, 58, 75, 151, 153
BstV1I GCAGC 6 cut(s) 199, 241, 352, 1072, 1075, 1163
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 3 cut(s) 143, 1137, 1161
BtrI CACGTC 2 cut(s) 908, 1124
BtsCI GGATG 4 cut(s) 329, 497, 697, 1058
BtsI GCAGTG 1 cut(s) 886
BtsIMutI CAGTG 4 cut(s) 375, 683, 886, 995
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 9 cut(s) 60, 141, 192, 227, 759, 797, 801, 960, 1163
CfoI GCGC 7 cut(s) 25, 36, 58, 77, 153, 462, 518
Cfr10I RCCGGY 2 cut(s) 139, 433
Cfr13I GGNCC 1 cut(s) 1135
CseI GACGC 2 cut(s) 142, 1043
Csp6I GTAC 4 cut(s) 69, 662, 833, 1119
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 7 cut(s) 471, 557, 625, 800, 963, 1007, 1248
CviQI GTAC 4 cut(s) 69, 662, 833, 1119
DdeI CTNAG 5 cut(s) 79, 818, 857, 1044, 1166
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 2 cut(s) 141, 1159
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 1178
EarI CTCTTC 1 cut(s) 1178
EclXI CGGCCG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 1201
Eco52I CGGCCG 1 cut(s) 141
Eco57I CTGAAG 3 cut(s) 187, 758, 1248
Eco91I GGTNACC 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 1135
EcoO65I GGTNACC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 1074
FaeI CATG 7 cut(s) 474, 560, 628, 803, 966, 1010, 1251
FaqI GGGAC 2 cut(s) 32, 1008
FatI CATG 7 cut(s) 470, 556, 624, 799, 962, 1006, 1247
Fnu4HI GCNGC 6 cut(s) 188, 230, 366, 1086, 1089, 1152
FokI GGATG 4 cut(s) 336, 504, 704, 1045
Fsp4HI GCNGC 6 cut(s) 188, 230, 366, 1086, 1089, 1152
FspI TGCGCA 1 cut(s) 517
GlaI GCGC 7 cut(s) 24, 35, 57, 76, 152, 461, 517
GluI GCNGC 6 cut(s) 188, 230, 366, 1086, 1089, 1152
GsuI CTGGAG 3 cut(s) 167, 957, 1115
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 143, 1137, 1161
HapII CCGG 4 cut(s) 140, 176, 434, 1101
HgaI GACGC 2 cut(s) 142, 1043
HhaI GCGC 7 cut(s) 25, 36, 58, 77, 153, 462, 518
Hin1II CATG 7 cut(s) 474, 560, 628, 803, 966, 1010, 1251
Hin6I GCGC 7 cut(s) 23, 34, 56, 75, 151, 460, 516
HinP1I GCGC 7 cut(s) 23, 34, 56, 75, 151, 460, 516
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 5 cut(s) 146, 939, 1097, 1186, 1202
HpaII CCGG 4 cut(s) 140, 176, 434, 1101
HphI GGTGA 3 cut(s) 333, 619, 647
Hpy166II GTNNAC 6 cut(s) 638, 780, 863, 968, 1012, 1121
Hpy188I TCNGA 4 cut(s) 172, 1045, 1201, 1207
Hpy188III TCNNGA 5 cut(s) 272, 301, 440, 1094, 1180
Hpy8I GTNNAC 6 cut(s) 638, 780, 863, 968, 1012, 1121
HpyAV CCTTC 4 cut(s) 322, 442, 865, 1031
HpyCH4III ACNGT 5 cut(s) 358, 379, 424, 730, 1114
HpyCH4IV ACGT 2 cut(s) 907, 1123
HpyF3I CTNAG 5 cut(s) 79, 818, 857, 1044, 1166
HpySE526I ACGT 2 cut(s) 907, 1123
Hsp92II CATG 7 cut(s) 474, 560, 628, 803, 966, 1010, 1251
HspAI GCGC 7 cut(s) 23, 34, 56, 75, 151, 460, 516
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
LmnI GCTCC 3 cut(s) 47, 137, 808
Lsp1109I GCAGC 6 cut(s) 199, 241, 352, 1072, 1075, 1163
LweI GCATC 6 cut(s) 447, 482, 770, 937, 1132, 1138
MaeII ACGT 2 cut(s) 907, 1123
MaeIII GTNAC 3 cut(s) 339, 358, 607
MboII GAAGA 1 cut(s) 1195
MfeI CAATTG 1 cut(s) 828
MhlI GDGCHC 3 cut(s) 44, 865, 960
MlsI TGGCCA 1 cut(s) 1161
MluCI AATT 5 cut(s) 561, 699, 720, 747, 828
MluNI TGGCCA 1 cut(s) 1161
MlyI GAGTC 5 cut(s) 140, 948, 1106, 1195, 1211
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 1 cut(s) 1161
MroNI GCCGGC 1 cut(s) 139
MscI TGGCCA 1 cut(s) 1161
MseI TTAA 5 cut(s) 261, 381, 549, 750, 1026
MslI CAYNNNNRTG 3 cut(s) 629, 676, 963
Msp20I TGGCCA 1 cut(s) 1161
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 4 cut(s) 140, 176, 434, 1101
MspR9I CCNGG 1 cut(s) 1076
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 1076
MvnI CGCG 6 cut(s) 36, 56, 58, 75, 151, 153
NaeI GCCGGC 1 cut(s) 141
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 7 cut(s) 474, 560, 628, 803, 966, 1010, 1251
NlaIV GGNNCC 3 cut(s) 545, 738, 1136
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 2 cut(s) 339, 607
NsbI TGCGCA 1 cut(s) 517
NspI RCATGY 4 cut(s) 474, 803, 966, 1251
OliI CACNNNNGTG 2 cut(s) 676, 963
PaeI GCATGC 1 cut(s) 803
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 168
PctI GAATGC 1 cut(s) 296
PdiI GCCGGC 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 6 cut(s) 189, 231, 367, 1087, 1090, 1153
PleI GAGTC 5 cut(s) 140, 947, 1105, 1194, 1210
PpsI GAGTC 5 cut(s) 140, 947, 1105, 1194, 1210
PshAI GACNNNNGTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 1074
PspEI GGTNACC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 1074
PspN4I GGNNCC 3 cut(s) 545, 738, 1136
PspPI GGNCC 1 cut(s) 1135
RsaI GTAC 4 cut(s) 70, 663, 834, 1120
RsaNI GTAC 4 cut(s) 69, 662, 833, 1119
RseI CAYNNNNRTG 3 cut(s) 629, 676, 963
SaqAI TTAA 5 cut(s) 261, 381, 549, 750, 1026
SatI GCNGC 6 cut(s) 188, 230, 366, 1086, 1089, 1152
Sau96I GGNCC 1 cut(s) 1135
SchI GAGTC 5 cut(s) 140, 948, 1106, 1195, 1211
ScrFI CCNGG 1 cut(s) 1076
SduI GDGCHC 3 cut(s) 44, 865, 960
SfaNI GCATC 6 cut(s) 447, 482, 770, 937, 1132, 1138
SfcI CTRYAG 1 cut(s) 217
SmiMI CAYNNNNRTG 3 cut(s) 629, 676, 963
SmlI CTYRAG 3 cut(s) 311, 548, 653
SmoI CTYRAG 3 cut(s) 311, 548, 653
SphI GCATGC 1 cut(s) 803
Sse9I AATT 5 cut(s) 561, 699, 720, 747, 828
SspI AATATT 1 cut(s) 887
StyD4I CCNGG 1 cut(s) 1074
TaaI ACNGT 5 cut(s) 358, 379, 424, 730, 1114
TaiI ACGT 2 cut(s) 910, 1126
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 561, 699, 720, 747, 828
TatI WGTACW 2 cut(s) 661, 1118
Tru1I TTAA 5 cut(s) 261, 381, 549, 750, 1026
Tru9I TTAA 5 cut(s) 261, 381, 549, 750, 1026
TscAI CASTG 4 cut(s) 382, 683, 886, 995
TseFI GTSAC 2 cut(s) 339, 607
TseI GCWGC 6 cut(s) 187, 229, 365, 1085, 1088, 1151
Tsp45I GTSAC 2 cut(s) 339, 607
TspDTI ATGAA 7 cut(s) 224, 573, 613, 662, 884, 909, 974
TspGWI ACGGA 2 cut(s) 34, 56
TspRI CASTG 4 cut(s) 382, 683, 886, 995
Vha464I CTTAAG 1 cut(s) 548
VneI GTGCAC 1 cut(s) 861
XceI RCATGY 4 cut(s) 474, 803, 966, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.