Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8028224.1

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 462

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8028224.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

atggctacaacttggcttgaagcactgccggccgatcataaaaaggtcatcatgaataatctagttcgcggccggaaaagcgcgacggagcttcagtctcggctcaacaacctcagcaatggctcgacgtcgctttcggcccaggagcttgtgatggagatcgtgacgtctttcactgagagtctttctgttctgagtgagtcttccaagttgtgtggcggtgatgatgatcatcagtactccggtactaatggctgtggagccggtgagattgttaaagcggaggtgtcccatgtggaacagtcgcattgcggtgaccggagctctgaggattccggcgagagcaggaagaggccgggttataaggatcggagaggttgctacaagcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

130

Amino Acids

14.17

Weight (kDa)

6.42

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AatII	GACGTC	2 cut(s)	131, 170
AccII	CGCG	2 cut(s)	69, 83
AciI	CCGC	4 cut(s)	69, 219, 281, 312
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	2 cut(s)	30, 70
AcuI	CTGAAG	1 cut(s)	77
AcyI	GRCGYC	2 cut(s)	128, 167
AfaI	GTAC	2 cut(s)	239, 247
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	91, 148, 324
AluI	AGCT	3 cut(s)	91, 148, 324
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	4 cut(s)	30, 70, 138, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	233, 278, 326
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	326
BbvCI	CCTCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	143, 357
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	2 cut(s)	143, 357
BpiI	GAAGAC	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	357
BsaBI	GATNNNNATC	3 cut(s)	158, 228, 231
BsaHI	GRCGYC	2 cut(s)	128, 167
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	2 cut(s)	242, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	2 cut(s)	28, 263
Bse3DI	GCAATG	2 cut(s)	124, 307
Bse8I	GATNNNNATC	3 cut(s)	158, 228, 231
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	141
BseJI	GATNNNNATC	3 cut(s)	158, 228, 231
BseMI	GCAATG	2 cut(s)	124, 307
BseMII	CTCAG	4 cut(s)	127, 168, 185, 318
BseX3I	CGGCCG	2 cut(s)	30, 70
Bsh1236I	CGCG	2 cut(s)	69, 83
Bsh1285I	CGRYCG	2 cut(s)	33, 73
BshFI	GGCC	4 cut(s)	32, 72, 140, 355
BsiEI	CGRYCG	2 cut(s)	33, 73
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	7 cut(s)	29, 73, 243, 264, 319, 336, 356
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	4 cut(s)	32, 72, 140, 355
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	4 cut(s)	34, 159, 229, 367
BspACI	CCGC	4 cut(s)	69, 219, 281, 312
BspANI	GGCC	4 cut(s)	32, 72, 140, 355
BspCNI	CTCAG	4 cut(s)	126, 169, 186, 319
BspFNI	CGCG	2 cut(s)	69, 83
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	124, 307
BsrFI	RCCGGY	2 cut(s)	28, 263
BssAI	RCCGGY	2 cut(s)	28, 263
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	4 cut(s)	34, 159, 229, 367
BssNI	GRCGYC	2 cut(s)	128, 167
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	2 cut(s)	128, 167
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	4 cut(s)	113, 177, 194, 327
BstEII	GGTNACC	1 cut(s)	314
BstFNI	CGCG	2 cut(s)	69, 83
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	37, 162, 232, 370
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	4 cut(s)	34, 159, 229, 367
BstMCI	CGRYCG	2 cut(s)	33, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 78
BstNI	CCWGG	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	141, 355
BstUI	CGCG	2 cut(s)	69, 83
BstV2I	GAAGAC	1 cut(s)	195
BstZI	CGGCCG	2 cut(s)	30, 70
BsuRI	GGCC	4 cut(s)	32, 72, 140, 355
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 174
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	2 cut(s)	28, 263
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	238, 246
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	2 cut(s)	52, 293
CviQI	GTAC	2 cut(s)	238, 246
DdeI	CTNAG	4 cut(s)	113, 177, 194, 327
DpnI	GATC	4 cut(s)	36, 161, 231, 369
DpnII	GATC	4 cut(s)	34, 159, 229, 367
EaeI	YGGCCR	2 cut(s)	30, 70
EagI	CGGCCG	2 cut(s)	30, 70
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	324
EclXI	CGGCCG	2 cut(s)	30, 70
Eco24I	GRGCYC	1 cut(s)	326
Eco52I	CGGCCG	2 cut(s)	30, 70
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	326
FaeI	CATG	2 cut(s)	55, 296
FaiI	YATR	4 cut(s)	39, 53, 294, 363
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	2 cut(s)	51, 292
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	32, 72, 140, 355
HapII	CCGG	7 cut(s)	29, 73, 243, 264, 319, 336, 356
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	2 cut(s)	128, 167
Hin1II	CATG	2 cut(s)	55, 296
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	181, 200, 332
HpaII	CCGG	7 cut(s)	29, 73, 243, 264, 319, 336, 356
HphI	GGTGA	3 cut(s)	233, 278, 326
Hpy188I	TCNGA	3 cut(s)	195, 328, 372
Hpy188III	TCNNGA	2 cut(s)	52, 163
Hpy99I	CGWCG	3 cut(s)	88, 130, 133
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	2 cut(s)	128, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 78
HpyF3I	CTNAG	4 cut(s)	113, 177, 194, 327
HpySE526I	ACGT	2 cut(s)	128, 167
Hsp92I	GRCGYC	2 cut(s)	128, 167
Hsp92II	CATG	2 cut(s)	55, 296
HspAI	GCGC	1 cut(s)	81
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	34, 159, 229, 367
LmnI	GCTCC	4 cut(s)	88, 145, 260, 321
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	128, 167
MaeIII	GTNAC	2 cut(s)	163, 314
MalI	GATC	4 cut(s)	36, 161, 231, 369
MboI	GATC	4 cut(s)	34, 159, 229, 367
MboII	GAAGA	2 cut(s)	195, 361
MhlI	GDGCHC	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	190, 209
MnlI	CCTC	5 cut(s)	122, 277, 322, 345, 368
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	7 cut(s)	29, 73, 243, 264, 319, 336, 356
MspR9I	CCNGG	2 cut(s)	143, 357
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	69, 83
MwoI	GCNNNNNNNGC	2 cut(s)	29, 78
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	34, 159, 229, 367
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	55, 296
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	163, 314
PagI	TCATGA	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	71
PleI	GAGTC	2 cut(s)	189, 208
PpsI	GAGTC	2 cut(s)	189, 208
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	239, 247
RsaNI	GTAC	2 cut(s)	238, 246
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	4 cut(s)	34, 159, 229, 367
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	190, 209
ScrFI	CCNGG	2 cut(s)	143, 357
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	9 cut(s)	48, 93, 114, 131, 150, 170, 288, 326, 379
SmiMI	CAYNNNNRTG	1 cut(s)	312
SsiI	CCGC	4 cut(s)	69, 219, 281, 312
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	141, 355
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	2 cut(s)	131, 170
TaqI	TCGA	1 cut(s)	125
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	30, 181
TseFI	GTSAC	2 cut(s)	163, 314
Tsp45I	GTSAC	2 cut(s)	163, 314
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	30, 181
XspI	CTAG	1 cut(s)	62
ZraI	GACGTC	2 cut(s)	129, 168
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.