Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007105

Physical Location & Seq

Genomic Coordinates Forward (+)

61165401 .. 61166532

Gene Structure 1132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTTCCTGGGGTAGAAGCATTCTCGAGGTGGGAATGGCCCCCGAAAGTGGACCGGAGCTCTGCCAGCGAGAGCAAGAAGAGGCCAGGTTTGAAGGATCAGAGCAATTCCTACAAGAGAAGAAAGAATTCAGAGTCATGGACAGTGGTCTCACCTGAACTAACTGACGACGGTCAGGCTTGGAGAAAATATGGCCAGAAGATGAATCTGAATTCTCGACATCCTAGATGTTACTTCAGGTGTACCCACAAGTATGATCAGGGTTGCAAGGCAACCAAACATGTTCAACAACTCCAAGACACCATGTACAAAACCACCTATTATGGAAACCACACATGCAGAGACATAATCAAGGGTCCACAACTTATCATGGGCGCCTCCGACCCTCATAAATATTGGTGGATACCTAATCATCAAACTACTGTTAGCTCAGAAGCTGGGTCGATCACAAATTACAATAAGAAGGATCATCAGGGTAGTCATTTCTCTAGCTCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

166

Amino Acids

19.26

Weight (kDa)

9.57

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	56 - 113	1.6e-19	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40750 AT3G56400
fragaria_vesca	FvH4_7g26030
malus_domestica	MD01G1168600.v1.1 MD07G1234700.v1.1
prunus_persica	Prupe.2G265000_v2.0.a1
pyrus_communis	pycom01g18160 pycom07g21230
rosa_chinensis	RchiOBHm_Chr1g0372441 RchiOBHm_Chr1g0372521
rosa_laevigata	RLG00000026893 RLG00000026898
rosa_multiflora	Rmu_co8027390.1_g000001 Rmu_co8028224.1_g000001 Rmu_sc0001755.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284920
rosa_rugosa	Rorug01G0371900
rosa_samantha	Rh1AG380400 Rh1AG381100 Rh1BG344000 Rh1BG344500 Rh1CG357400 Rh1DG375200 Rh1DG375700
rosa_wichuraiana	Rw1G033450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AclWI	GGATC	2 cut(s)	105, 474
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	127, 211
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	244, 308
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	94, 287
AjnI	CCWGG	2 cut(s)	7, 85
AluBI	AGCT	4 cut(s)	60, 429, 437, 492
AluI	AGCT	4 cut(s)	60, 429, 437, 492
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	154, 336
AlwI	GGATC	2 cut(s)	105, 474
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	38, 83, 193
ApoI	RAATTY	2 cut(s)	127, 211
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	39, 52, 356
AsuHPI	GGTGA	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	52, 356
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	9, 87
BciVI	GTATCC	1 cut(s)	396
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	154, 336
BfaI	CTAG	2 cut(s)	225, 489
BfoI	RGCGCY	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	396
Bme1390I	CCNGG	2 cut(s)	9, 87
Bme18I	GGWCC	2 cut(s)	52, 356
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	39, 52, 356
BmiI	GGNNCC	3 cut(s)	41, 357, 376
BmrFI	CCNGG	2 cut(s)	9, 87
BoxI	GACNNNNGTC	2 cut(s)	146, 171
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	9, 87
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	444
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	3 cut(s)	40, 85, 195
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	154, 336
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	40, 85, 195
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	97, 256, 444, 466
BspANI	GGCC	3 cut(s)	40, 85, 195
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	3 cut(s)	41, 357, 376
BspPI	GGATC	2 cut(s)	105, 474
BspT107I	GGYRCC	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	4 cut(s)	97, 256, 444, 466
BssNI	GRCGYC	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	9, 87
Bst4CI	ACNGT	3 cut(s)	145, 173, 424
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	4 cut(s)	100, 259, 447, 469
BstMAI	GTCTC	2 cut(s)	154, 336
BstMBI	GATC	4 cut(s)	97, 256, 444, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	2 cut(s)	9, 87
BstNSI	RCATGY	2 cut(s)	284, 339
BstPAI	GACNNNNGTC	2 cut(s)	146, 171
BstSCI	CCNGG	2 cut(s)	7, 85
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	40, 85, 195
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	39, 52, 356
Csp6I	GTAC	2 cut(s)	243, 307
CviAII	CATG	5 cut(s)	138, 281, 304, 336, 370
CviJI	RGCY	8 cut(s)	40, 60, 85, 179, 195, 429, 437, 492
CviKI_1	RGCY	8 cut(s)	40, 60, 85, 179, 195, 429, 437, 492
CviQI	GTAC	2 cut(s)	243, 307
DdeI	CTNAG	1 cut(s)	430
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	4 cut(s)	99, 258, 446, 468
DpnII	GATC	4 cut(s)	97, 256, 444, 466
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	52, 356
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	60
EcoRI	GAATTC	2 cut(s)	127, 211
EcoRII	CCWGG	2 cut(s)	7, 85
EcoT38I	GRGCYC	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
FaeI	CATG	5 cut(s)	141, 284, 307, 339, 373
FatI	CATG	5 cut(s)	137, 280, 303, 335, 369
FbaI	TGATCA	1 cut(s)	256
FokI	GGATG	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	62
FspBI	CTAG	2 cut(s)	225, 489
GlaI	GCGC	1 cut(s)	376
GsaI	CCCAGC	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	40, 85, 195
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	5 cut(s)	141, 284, 307, 339, 373
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HinfI	GANTC	2 cut(s)	134, 205
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	3 cut(s)	52, 243, 359
Hpy188I	TCNGA	5 cut(s)	102, 133, 210, 382, 433
Hpy188III	TCNNGA	2 cut(s)	25, 216
Hpy8I	GTNNAC	3 cut(s)	52, 243, 359
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	88, 457
HpyCH4III	ACNGT	3 cut(s)	145, 173, 424
HpyCH4V	TGCA	2 cut(s)	267, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	430
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	5 cut(s)	141, 284, 307, 339, 373
HspAI	GCGC	1 cut(s)	375
KasI	GGCGCC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	97, 256, 444, 466
LmnI	GCTCC	1 cut(s)	57
MaeI	CTAG	2 cut(s)	225, 489
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	99, 258, 446, 468
MboI	GATC	4 cut(s)	97, 256, 444, 466
MboII	GAAGA	3 cut(s)	91, 132, 211
MhlI	GDGCHC	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	4 cut(s)	106, 127, 211, 451
MluNI	TGGCCA	1 cut(s)	195
Mly113I	GGCGCC	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	4 cut(s)	21, 75, 388, 396
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	9, 87
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	9, 87
MwoI	GCNNNNNNNGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	375
NdeII	GATC	4 cut(s)	97, 256, 444, 466
NlaIII	CATG	5 cut(s)	141, 284, 307, 339, 373
NlaIV	GGNNCC	3 cut(s)	41, 357, 376
NspI	RCATGY	2 cut(s)	284, 339
PaeR7I	CTCGAG	1 cut(s)	25
PciI	ACATGT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	280
PshAI	GACNNNNGTC	2 cut(s)	146, 171
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	7, 85
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	7, 85
PspN4I	GGNNCC	3 cut(s)	41, 357, 376
PspPI	GGNCC	3 cut(s)	39, 52, 356
PstNI	CAGNNNCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	244, 308
RsaNI	GTAC	2 cut(s)	243, 307
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	97, 256, 444, 466
Sau96I	GGNCC	3 cut(s)	39, 52, 356
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	9, 87
SduI	GDGCHC	1 cut(s)	62
SfoI	GGCGCC	1 cut(s)	376
Sfr274I	CTCGAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	52, 356
SlaI	CTCGAG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	4 cut(s)	106, 127, 211, 451
SspDI	GGCGCC	1 cut(s)	374
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	2 cut(s)	225, 489
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	7, 85
TaaI	ACNGT	3 cut(s)	145, 173, 424
TaqI	TCGA	3 cut(s)	26, 217, 443
TasI	AATT	4 cut(s)	106, 127, 211, 451
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	205
TscAI	CASTG	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	52, 356
XapI	RAATTY	2 cut(s)	127, 211
XceI	RCATGY	2 cut(s)	284, 339
XhoI	CTCGAG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	2 cut(s)	225, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.