RLG00000026893
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
6825537 .. 6828101
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026893

Sequence Viewer

Length: 939 bp
ATGGAAGAGCAAAATCTAAGCTTCACCGAAACCAAATCTCATCATGACAGCTGTGACATCCTTTCCGTCAGTAGGAAAGGAAAAGAGGGGGCTGGGGTGCAGTTGGAGGTAAATCCAGCACTGGTGATTCTCCCTGAGGAAGCATTCTCGCAATGTGAATGGCCCCTGAAAGCGGACCGGAGCTCTGCCGGCGAGAGCAAGAAGAGGCCAGGTTTGGAGGATCAGAGGGATTCCTACAAGCGAAGAAGGAATTCAGAGTCATGGACAGTGGTTTCACACACAGTTGATGACGGTCAGGCTTGGAGGAAATATGGGCAGAGGCAAATCCGCAATGCTTTACATCCAAGGGTTTACTTCAGATGTGCCCACAGGAATGCTCAAGGTTGCTTGGCAACCAAACAAGTCCAACGGGTCCAAGACACCCCAGAAGAGTACAAGACCACCTACATTGGAAACCACACGTGCAGAAACATGATCAGGGGTCGACAGATGATCATGGGCGCCTCCGACCCTCCTACTTGGGATTCTCGTGCTCCTCCTCGAGCTACTTTAAGCTTAGAATCTGGATCGACCTCGATTTGCAATAACAAAGAACAGCATGGCGATCATGGTGGTCATCTCTCTAGCTCATCATCGAAGATTCCTTTTGTTCCGCTGAAGAAAGAAGATTGCAAGGAGGGGACGACGTTGAGTGGTCTGATGGACAGCGTTAACGAAACCAGTGACGTGTGGCGAGAGTTCCCTCCAACGCCTAATGATGACTTTCTTGATCCTCCTGATGACTTTCTTTCTTCTTTTGACTTTACGTCTCCTGGTTTTTTGCCTCCTCGTGTACCGCCTGGCTTTTTTGATCTTCCTGATGGCTTTCTGTCTCCGTCTCCTACTGTAACGCCTAATGATGACTCTCTTGATTTTCTTGATGGCCTTATAAGATTTTGA

Protein Analysis

313

Amino Acids

34.97

Weight (kDa)

5.63

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 96 - 155 7e-22 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AccB1I GGYRCC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 484
AciI CCGC 4 cut(s) 173, 328, 653, 836
AclWI GGATC 3 cut(s) 228, 574, 764
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 2 cut(s) 340, 677
AcvI CACGTG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 434, 834
AfiI CCNNNNNNNGG 2 cut(s) 72, 172
AflIII ACRYGT 2 cut(s) 459, 726
AhdI GACNNNNNGTC 1 cut(s) 805
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 3 cut(s) 208, 811, 838
AluBI AGCT 6 cut(s) 21, 51, 183, 545, 555, 627
AluI AGCT 6 cut(s) 21, 51, 183, 545, 555, 627
Alw21I GWGCWC 2 cut(s) 185, 535
Alw26I GTCTC 3 cut(s) 813, 876, 882
AlwI GGATC 3 cut(s) 228, 574, 764
Ama87I CYCGRG 1 cut(s) 540
AoxI GGCC 3 cut(s) 161, 206, 922
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 250
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 3 cut(s) 162, 175, 412
AsuHPI GGTGA 2 cut(s) 16, 136
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 2 cut(s) 175, 412
AxyI CCTNAGG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 1 cut(s) 185
BauI CACGAG 2 cut(s) 528, 828
BbrPI CACGTG 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 185, 535
BccI CCATC 3 cut(s) 694, 854, 914
BciT130I CCWGG 3 cut(s) 210, 813, 840
BclI TGATCA 2 cut(s) 474, 492
BcoDI GTCTC 3 cut(s) 813, 876, 882
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 504
Bme1390I CCNGG 3 cut(s) 210, 813, 840
Bme18I GGWCC 2 cut(s) 175, 412
BmeRI GACNNNNNGTC 1 cut(s) 805
BmeT110I CYCGRG 1 cut(s) 540
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 3 cut(s) 162, 175, 412
BmiI GGNNCC 3 cut(s) 164, 413, 502
BmrFI CCNGG 3 cut(s) 210, 813, 840
BpuEI CTTGAG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 172
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 126, 720
Bse21I CCTNAGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 158, 337
BseBI CCWGG 3 cut(s) 210, 813, 840
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 57, 340
BseLI CCNNNNNNNGG 2 cut(s) 72, 172
BseMI GCAATG 2 cut(s) 158, 337
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 126, 720
BseRI GAGGAG 3 cut(s) 525, 528, 816
BseSI GKGCMC 1 cut(s) 367
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 2 cut(s) 119, 484
BshFI GGCC 3 cut(s) 163, 208, 924
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 185, 535
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 2 cut(s) 178, 189
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 2 cut(s) 72, 172
BsmAI GTCTC 3 cut(s) 813, 876, 882
BsmBI CGTCTC 2 cut(s) 813, 882
BsmFI GGGAC 1 cut(s) 694
BsmI GAATGC 2 cut(s) 143, 379
BsnI GGCC 3 cut(s) 163, 208, 924
BsoBI CYCGRG 1 cut(s) 540
Bsp1286I GDGCHC 3 cut(s) 185, 367, 535
Bsp143I GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
BspACI CCGC 4 cut(s) 173, 328, 653, 836
BspANI GGCC 3 cut(s) 163, 208, 924
BspCNI CTCAG 1 cut(s) 127
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 164, 413, 502
BspPI GGATC 3 cut(s) 228, 574, 764
BspT107I GGYRCC 1 cut(s) 500
BsrDI GCAATG 2 cut(s) 158, 337
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 2 cut(s) 126, 720
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
BssNI GRCGYC 1 cut(s) 501
BssSI CACGAG 2 cut(s) 528, 828
BssT1I CCWWGG 1 cut(s) 344
Bst2BI CACGAG 2 cut(s) 528, 828
Bst2UI CCWGG 3 cut(s) 210, 813, 840
Bst4CI ACNGT 4 cut(s) 268, 283, 293, 886
Bst6I CTCTTC 2 cut(s) 197, 423
BstACI GRCGYC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 17, 135, 556
BstF5I GGATG 2 cut(s) 57, 340
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 7 cut(s) 223, 477, 495, 569, 607, 772, 853
BstMAI GTCTC 3 cut(s) 813, 876, 882
BstMBI GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 3 cut(s) 210, 813, 840
BstSCI CCNGG 3 cut(s) 208, 811, 838
BstSLI GKGCMC 1 cut(s) 367
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 3 cut(s) 163, 208, 924
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 2 cut(s) 57, 340
BtsIMutI CAGTG 3 cut(s) 119, 273, 727
Cac8I GCNNGC 1 cut(s) 190
CciI TCATGA 1 cut(s) 43
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 162, 175, 412
CpoI CGGWCCG 1 cut(s) 175
Csp6I GTAC 2 cut(s) 433, 833
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CspI CGGWCCG 1 cut(s) 175
CviAII CATG 6 cut(s) 44, 261, 472, 496, 599, 608
CviQI GTAC 2 cut(s) 433, 833
DdeI CTNAG 3 cut(s) 17, 135, 556
DinI GGCGCC 1 cut(s) 502
DpnI GATC 7 cut(s) 222, 476, 494, 568, 606, 771, 852
DpnII GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
DriI GACNNNNNGTC 1 cut(s) 805
Eam1104I CTCTTC 2 cut(s) 197, 423
Eam1105I GACNNNNNGTC 1 cut(s) 805
EarI CTCTTC 2 cut(s) 197, 423
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 175, 412
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 340, 677
Eco72I CACGTG 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 208, 811, 838
EcoT14I CCWWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 185
EgeI GGCGCC 1 cut(s) 502
EheI GGCGCC 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 2 cut(s) 813, 882
FaeI CATG 6 cut(s) 47, 264, 475, 499, 602, 611
FaiI YATR 8 cut(s) 45, 262, 312, 473, 497, 600, 609, 929
FaqI GGGAC 1 cut(s) 694
FatI CATG 6 cut(s) 43, 260, 471, 495, 598, 607
FbaI TGATCA 2 cut(s) 474, 492
FblI GTMKAC 1 cut(s) 484
FokI GGATG 2 cut(s) 44, 327
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 1 cut(s) 624
GlaI GCGC 1 cut(s) 502
GsaI CCCAGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 3 cut(s) 163, 208, 924
HapII CCGG 2 cut(s) 178, 189
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 6 cut(s) 47, 264, 475, 499, 602, 611
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 2 cut(s) 485, 712
HindII GTYRAC 2 cut(s) 485, 712
HindIII AAGCTT 2 cut(s) 19, 553
HinfI GANTC 7 cut(s) 127, 230, 257, 524, 560, 640, 902
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 2 cut(s) 178, 189
HphI GGTGA 2 cut(s) 16, 136
Hpy166II GTNNAC 4 cut(s) 352, 485, 712, 833
Hpy188I TCNGA 5 cut(s) 225, 256, 359, 508, 699
Hpy188III TCNNGA 7 cut(s) 44, 564, 767, 776, 857, 908, 917
Hpy8I GTNNAC 4 cut(s) 352, 485, 712, 833
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 4 cut(s) 268, 283, 293, 886
HpyCH4IV ACGT 4 cut(s) 461, 686, 726, 806
HpyCH4V TGCA 4 cut(s) 100, 465, 582, 672
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 3 cut(s) 17, 135, 556
HpySE526I ACGT 4 cut(s) 461, 686, 726, 806
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 6 cut(s) 47, 264, 475, 499, 602, 611
HspAI GCGC 1 cut(s) 501
KasI GGCGCC 1 cut(s) 500
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Ksp22I TGATCA 2 cut(s) 474, 492
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
LmnI GCTCC 2 cut(s) 180, 538
MaeI CTAG 1 cut(s) 624
MaeII ACGT 4 cut(s) 461, 686, 726, 806
MaeIII GTNAC 3 cut(s) 53, 722, 886
MalI GATC 7 cut(s) 222, 476, 494, 568, 606, 771, 852
MboI GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
MboII GAAGA 9 cut(s) 17, 214, 255, 440, 649, 670, 677, 783, 845
MhlI GDGCHC 3 cut(s) 185, 367, 535
MluCI AATT 1 cut(s) 250
Mly113I GGCGCC 1 cut(s) 501
MlyI GAGTC 2 cut(s) 266, 896
MmeI TCCRAC 4 cut(s) 84, 430, 531, 770
MroNI GCCGGC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 2 cut(s) 551, 711
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 2 cut(s) 51, 655
MspI CCGG 2 cut(s) 178, 189
MspR9I CCNGG 3 cut(s) 210, 813, 840
Mva1269I GAATGC 2 cut(s) 143, 379
MvaI CCWGG 3 cut(s) 210, 813, 840
MwoI GCNNNNNNNGC 1 cut(s) 189
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 501
NdeII GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 6 cut(s) 47, 264, 475, 499, 602, 611
NlaIV GGNNCC 3 cut(s) 164, 413, 502
NmuCI GTSAC 2 cut(s) 53, 722
PaeR7I CTCGAG 1 cut(s) 540
PagI TCATGA 1 cut(s) 43
PctI GAATGC 2 cut(s) 143, 379
PdiI GCCGGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 250
PfeI GAWTC 5 cut(s) 127, 230, 524, 560, 640
PleI GAGTC 2 cut(s) 265, 896
PluTI GGCGCC 1 cut(s) 504
PmaCI CACGTG 1 cut(s) 462
PmlI CACGTG 1 cut(s) 462
PpsI GAGTC 2 cut(s) 265, 896
Ppu21I YACGTR 1 cut(s) 462
PsiI TTATAA 1 cut(s) 929
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 208, 811, 838
PspCI CACGTG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 3 cut(s) 208, 811, 838
PspN4I GGNNCC 3 cut(s) 164, 413, 502
PspPI GGNCC 3 cut(s) 162, 175, 412
PspXI VCTCGAGB 1 cut(s) 540
PvuII CAGCTG 1 cut(s) 51
RsaI GTAC 2 cut(s) 434, 834
RsaNI GTAC 2 cut(s) 433, 833
RseI CAYNNNNRTG 1 cut(s) 372
Rsr2I CGGWCCG 1 cut(s) 175
RsrII CGGWCCG 1 cut(s) 175
SacI GAGCTC 1 cut(s) 185
SalI GTCGAC 1 cut(s) 483
SaqAI TTAA 2 cut(s) 551, 711
Sau3AI GATC 7 cut(s) 220, 474, 492, 566, 604, 769, 850
Sau96I GGNCC 3 cut(s) 162, 175, 412
SchI GAGTC 2 cut(s) 266, 896
ScrFI CCNGG 3 cut(s) 210, 813, 840
SduI GDGCHC 3 cut(s) 185, 367, 535
SfoI GGCGCC 1 cut(s) 502
Sfr274I CTCGAG 1 cut(s) 540
SinI GGWCC 2 cut(s) 175, 412
SlaI CTCGAG 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 378, 540
SmoI CTYRAG 2 cut(s) 378, 540
Sse9I AATT 1 cut(s) 250
SsiI CCGC 4 cut(s) 173, 328, 653, 836
SspDI GGCGCC 1 cut(s) 500
SspMI CTAG 1 cut(s) 624
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 3 cut(s) 208, 811, 838
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 268, 283, 293, 886
TaiI ACGT 4 cut(s) 464, 689, 729, 809
TaqI TCGA 5 cut(s) 484, 541, 569, 575, 635
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 5 cut(s) 127, 230, 524, 560, 640
Tru1I TTAA 2 cut(s) 551, 711
Tru9I TTAA 2 cut(s) 551, 711
TscAI CASTG 3 cut(s) 126, 273, 727
TseFI GTSAC 2 cut(s) 53, 722
Tsp45I GTSAC 2 cut(s) 53, 722
TspGWI ACGGA 2 cut(s) 55, 864
TspRI CASTG 3 cut(s) 126, 273, 727
VpaK11BI GGWCC 2 cut(s) 175, 412
XapI RAATTY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.