Rh1BG344000
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
47722071 .. 47724113
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG344000.1

Sequence Viewer

Length: 1041 bp
ATGGCTACAACTTGGCTTGAAGCACTGCCGGCCGATCATAAAGAGGTCGTCATGAAGAAGCTGGTTCGCGGCCGGGACAGCGCGACGGAGCTTCAGTCTCGGCTCAACAACCTCAGCAATGGCTCGACGTCGCTTTCGACCCAGGAGCTTGTGATGGAGATCGTGACTTCTTTCACTGAGAGTCTTTCTGTTCTGAGTGAGTCTTCCAAGTTGTGTGGTGGTGATGATGATCATCAGTACTCCGGTACTAATGGCTGTGGAGCCGGTGAGATTGTTAAAGCGGAGGCGTCCCATGTGGAACAGTCGCATTGCGGTGGCCGGAGCTCTGAGGATTCCGGCGAGAGCAGGAAGAGGCCGGGTTATAAGGATCGGAGAGGTTGCTACAAGCGAAGAAAGAATTCAGAGTCATGGTCAATGGTTTCATCCACAGTTGATGATGGTCAGGCTTGGAGGAAGTATGGCCAGAAGGAAATCCTCAATGCTCCATATCCAAGGGCTTACTTCAGATGTACCCGCAAGTATGATCAAGGTTGCCAAGCAACCAAACAAGTCCAACAAGTCCAAGACACCCCAAAAGTGTACAAAACCACCTACATTGGAACCCACACGTGCAGAAACATGATCAGGGGTCCACAGATGATCATGGGCGCCACCGATCCTCCTACTTGGGATTCTCATGCTCCTCCTCGATCTAGTGTTAGCTCGGAATCTGGATCGACCCCAATTTGCAATAAGAAAGAACATCACGGTGTTCATGGTGGTCATCTCCCTAGCTCGTCGTCTATGATTCCCTTCGTTCCGGTGAAGAAAGAAGAGTGCAAGGAGGGGACGACGTCGAGTGGTCTGACGGACAACCTTAACGATACAAGTGATGTGTGGCCGGAGTTCAAGGATGATCATCATCATGATTTTGGGTTCCCTGAGACTACTGTAATGTCTAATGAGAATGCGGTTTCGAACATGCAGTTCTTGGACATGGACTTGGTGGTGAAGTCTATTAATTTCGAGAATGAGTTTGATTTTGATGAGCATTTCCTTTAG

Protein Analysis

346

Amino Acids

38.55

Weight (kDa)

5.88

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 145 - 204 5.3e-23 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AatII GACGTC 2 cut(s) 131, 836
AccB1I GGYRCC 1 cut(s) 647
AccII CGCG 2 cut(s) 69, 83
AciI CCGC 5 cut(s) 69, 281, 312, 514, 950
AclWI GGATC 3 cut(s) 375, 650, 721
AcoI YGGCCR 5 cut(s) 30, 70, 316, 460, 878
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 77, 487
AcvI CACGTG 1 cut(s) 609
AcyI GRCGYC 4 cut(s) 128, 287, 648, 833
AfaI GTAC 4 cut(s) 239, 247, 511, 581
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 2 cut(s) 20, 889
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 6 cut(s) 61, 91, 148, 324, 702, 774
AluI AGCT 6 cut(s) 61, 91, 148, 324, 702, 774
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 102, 917
AlwI GGATC 3 cut(s) 375, 650, 721
AoxI GGCC 6 cut(s) 30, 70, 316, 353, 460, 878
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AseI ATTAAT 1 cut(s) 999
Asp700I GAANNNNTTC 1 cut(s) 397
AspLEI GCGC 2 cut(s) 83, 650
AspS9I GGNCC 1 cut(s) 629
AsuC2I CCSGG 2 cut(s) 74, 357
AsuHPI GGTGA 4 cut(s) 233, 278, 814, 1000
AsuII TTCGAA 1 cut(s) 956
AvaII GGWCC 1 cut(s) 629
BalI TGGCCA 1 cut(s) 462
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 326
BbrPI CACGTG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 113
BccI CCATC 2 cut(s) 148, 431
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 5 cut(s) 229, 523, 621, 639, 895
BcnI CCSGG 2 cut(s) 74, 357
BcoDI GTCTC 2 cut(s) 102, 917
BfaI CTAG 2 cut(s) 693, 771
BfoI RGCGCY 1 cut(s) 651
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 3 cut(s) 74, 143, 357
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 5 cut(s) 262, 601, 630, 649, 917
BmrFI CCNGG 3 cut(s) 74, 143, 357
BpiI GAAGAC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 956
BpuMI CCSGG 2 cut(s) 74, 357
BsaAI YACGTR 1 cut(s) 609
BsaBI GATNNNNATC 5 cut(s) 158, 228, 231, 897, 900
BsaHI GRCGYC 4 cut(s) 128, 287, 648, 833
BsaJI CCNNGG 2 cut(s) 141, 491
BsaWI WCCGGW 2 cut(s) 242, 799
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 643, 673
Bse118I RCCGGY 2 cut(s) 28, 263
Bse3DI GCAATG 2 cut(s) 124, 307
Bse8I GATNNNNATC 5 cut(s) 158, 228, 231, 897, 900
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 141, 491
BseGI GGATG 2 cut(s) 422, 898
BseJI GATNNNNATC 5 cut(s) 158, 228, 231, 897, 900
BseMI GCAATG 2 cut(s) 124, 307
BseMII CTCAG 5 cut(s) 127, 168, 185, 318, 912
BseRI GAGGAG 2 cut(s) 672, 675
BseX3I CGGCCG 2 cut(s) 30, 70
BsgI GTGCAG 1 cut(s) 631
Bsh1236I CGCG 2 cut(s) 69, 83
Bsh1285I CGRYCG 2 cut(s) 33, 73
BshFI GGCC 6 cut(s) 32, 72, 318, 355, 462, 880
BshNI GGYRCC 1 cut(s) 647
BsiEI CGRYCG 2 cut(s) 33, 73
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 9 cut(s) 29, 73, 243, 264, 319, 336, 356, 800, 881
BslFI GGGAC 3 cut(s) 89, 274, 841
BsmAI GTCTC 2 cut(s) 102, 917
BsmFI GGGAC 3 cut(s) 89, 274, 841
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 6 cut(s) 32, 72, 318, 355, 462, 880
Bsp119I TTCGAA 1 cut(s) 956
Bsp1286I GDGCHC 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 579
BspACI CCGC 5 cut(s) 69, 281, 312, 514, 950
BspANI GGCC 6 cut(s) 32, 72, 318, 355, 462, 880
BspCNI CTCAG 5 cut(s) 126, 169, 186, 319, 913
BspFNI CGCG 2 cut(s) 69, 83
BspHI TCATGA 2 cut(s) 51, 904
BspLI GGNNCC 5 cut(s) 262, 601, 630, 649, 917
BspPI GGATC 3 cut(s) 375, 650, 721
BspT104I TTCGAA 1 cut(s) 956
BspT107I GGYRCC 1 cut(s) 647
BsrDI GCAATG 2 cut(s) 124, 307
BsrFI RCCGGY 2 cut(s) 28, 263
BsrGI TGTACA 1 cut(s) 579
BssAI RCCGGY 2 cut(s) 28, 263
BssECI CCNNGG 2 cut(s) 141, 491
BssNI GRCGYC 4 cut(s) 128, 287, 648, 833
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 4 cut(s) 303, 430, 749, 931
Bst6I CTCTTC 2 cut(s) 344, 807
BstACI GRCGYC 4 cut(s) 128, 287, 648, 833
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 609
BstBI TTCGAA 1 cut(s) 956
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 5 cut(s) 113, 177, 194, 327, 921
BstF5I GGATG 2 cut(s) 422, 898
BstFNI CGCG 2 cut(s) 69, 83
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 2 cut(s) 83, 650
BstMAI GTCTC 2 cut(s) 102, 917
BstMCI CGRYCG 2 cut(s) 33, 73
BstMWI GCNNNNNNNGC 2 cut(s) 29, 78
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 3 cut(s) 72, 141, 355
BstUI CGCG 2 cut(s) 69, 83
BstV2I GAAGAC 1 cut(s) 195
BstZI CGGCCG 2 cut(s) 30, 70
BsuRI GGCC 6 cut(s) 32, 72, 318, 355, 462, 880
BtsCI GGATG 2 cut(s) 422, 898
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 23, 174
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 2 cut(s) 51, 904
CfoI GCGC 2 cut(s) 83, 650
Cfr10I RCCGGY 2 cut(s) 28, 263
Cfr13I GGNCC 1 cut(s) 629
CseI GACGC 1 cut(s) 276
Csp6I GTAC 4 cut(s) 238, 246, 510, 580
CspCI CAANNNNNGTGG 4 cut(s) 196, 231, 577, 612
CviQI GTAC 4 cut(s) 238, 246, 510, 580
DdeI CTNAG 5 cut(s) 113, 177, 194, 327, 921
DinI GGCGCC 1 cut(s) 649
EaeI YGGCCR 5 cut(s) 30, 70, 316, 460, 878
EagI CGGCCG 2 cut(s) 30, 70
Eam1104I CTCTTC 2 cut(s) 344, 807
EarI CTCTTC 2 cut(s) 344, 807
Ecl136II GAGCTC 1 cut(s) 324
EclXI CGGCCG 2 cut(s) 30, 70
Eco130I CCWWGG 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 629
Eco52I CGGCCG 2 cut(s) 30, 70
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 77, 487
Eco72I CACGTG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 491
EcoT38I GRGCYC 1 cut(s) 326
EgeI GGCGCC 1 cut(s) 649
EheI GGCGCC 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 491
FaqI GGGAC 3 cut(s) 89, 274, 841
FauI CCCGC 1 cut(s) 521
FbaI TGATCA 5 cut(s) 229, 523, 621, 639, 895
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 2 cut(s) 409, 905
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 2 cut(s) 693, 771
GlaI GCGC 2 cut(s) 82, 649
GluI GCNGC 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 6 cut(s) 32, 72, 318, 355, 462, 880
HapII CCGG 9 cut(s) 29, 73, 243, 264, 319, 336, 356, 800, 881
HgaI GACGC 1 cut(s) 276
HhaI GCGC 2 cut(s) 83, 650
Hin1I GRCGYC 4 cut(s) 128, 287, 648, 833
Hin6I GCGC 2 cut(s) 81, 648
HinP1I GCGC 2 cut(s) 81, 648
HinfI GANTC 7 cut(s) 181, 200, 332, 404, 671, 707, 787
HpaII CCGG 9 cut(s) 29, 73, 243, 264, 319, 336, 356, 800, 881
HphI GGTGA 4 cut(s) 233, 278, 814, 1000
Hpy166II GTNNAC 2 cut(s) 580, 632
Hpy188I TCNGA 7 cut(s) 195, 328, 372, 403, 506, 706, 846
Hpy188III TCNNGA 5 cut(s) 52, 163, 711, 905, 1006
Hpy8I GTNNAC 2 cut(s) 580, 632
Hpy99I CGWCG 6 cut(s) 88, 130, 133, 781, 835, 838
HpyAV CCTTC 2 cut(s) 460, 802
HpyCH4III ACNGT 4 cut(s) 303, 430, 749, 931
HpyCH4IV ACGT 3 cut(s) 128, 608, 833
HpyCH4V TGCA 4 cut(s) 612, 729, 819, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 78
HpyF3I CTNAG 5 cut(s) 113, 177, 194, 327, 921
HpySE526I ACGT 3 cut(s) 128, 608, 833
Hsp92I GRCGYC 4 cut(s) 128, 287, 648, 833
HspAI GCGC 2 cut(s) 81, 648
KasI GGCGCC 1 cut(s) 647
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Ksp22I TGATCA 5 cut(s) 229, 523, 621, 639, 895
LmnI GCTCC 6 cut(s) 88, 145, 260, 321, 487, 685
MaeI CTAG 2 cut(s) 693, 771
MaeII ACGT 3 cut(s) 128, 608, 833
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 6 cut(s) 67, 195, 361, 402, 817, 824
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 462
MluCI AATT 3 cut(s) 397, 723, 1000
MluNI TGGCCA 1 cut(s) 462
Mly113I GGCGCC 1 cut(s) 648
MlyI GAGTC 3 cut(s) 190, 209, 413
MmeI TCCRAC 1 cut(s) 577
Mox20I TGGCCA 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 462
MseI TTAA 3 cut(s) 276, 858, 999
MslI CAYNNNNRTG 3 cut(s) 312, 747, 903
Msp20I TGGCCA 1 cut(s) 462
MspI CCGG 9 cut(s) 29, 73, 243, 264, 319, 336, 356, 800, 881
MspR9I CCNGG 3 cut(s) 74, 143, 357
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 2 cut(s) 69, 83
MwoI GCNNNNNNNGC 2 cut(s) 29, 78
NaeI GCCGGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 648
NciI CCSGG 2 cut(s) 74, 357
NgoMIV GCCGGC 1 cut(s) 28
NlaIV GGNNCC 5 cut(s) 262, 601, 630, 649, 917
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 964
NspV TTCGAA 1 cut(s) 956
PagI TCATGA 2 cut(s) 51, 904
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PctI GAATGC 1 cut(s) 952
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 4 cut(s) 332, 671, 707, 787
PflFI GACNNNGTC 1 cut(s) 832
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 3 cut(s) 189, 208, 412
PluTI GGCGCC 1 cut(s) 651
PmaCI CACGTG 1 cut(s) 609
PmlI CACGTG 1 cut(s) 609
PpsI GAGTC 3 cut(s) 189, 208, 412
Ppu21I YACGTR 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 999
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 141
PspCI CACGTG 1 cut(s) 609
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 5 cut(s) 262, 601, 630, 649, 917
PspPI GGNCC 1 cut(s) 629
PsyI GACNNNGTC 1 cut(s) 832
RsaI GTAC 4 cut(s) 239, 247, 511, 581
RsaNI GTAC 4 cut(s) 238, 246, 510, 580
RseI CAYNNNNRTG 3 cut(s) 312, 747, 903
SacI GAGCTC 1 cut(s) 326
SaqAI TTAA 3 cut(s) 276, 858, 999
SatI GCNGC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 629
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 3 cut(s) 190, 209, 413
ScrFI CCNGG 3 cut(s) 74, 143, 357
SduI GDGCHC 1 cut(s) 326
SfoI GGCGCC 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 956
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 3 cut(s) 312, 747, 903
Sse9I AATT 3 cut(s) 397, 723, 1000
SsiI CCGC 5 cut(s) 69, 281, 312, 514, 950
SspDI GGCGCC 1 cut(s) 647
SspMI CTAG 2 cut(s) 693, 771
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 72, 141, 355
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 4 cut(s) 303, 430, 749, 931
TaiI ACGT 3 cut(s) 131, 611, 836
TaqI TCGA 7 cut(s) 125, 137, 688, 716, 836, 956, 1005
TasI AATT 3 cut(s) 397, 723, 1000
TatI WGTACW 2 cut(s) 237, 579
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 4 cut(s) 332, 671, 707, 787
Tru1I TTAA 3 cut(s) 276, 858, 999
Tru9I TTAA 3 cut(s) 276, 858, 999
TscAI CASTG 2 cut(s) 30, 181
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 68, 411, 743
TspGWI ACGGA 2 cut(s) 101, 863
TspRI CASTG 2 cut(s) 30, 181
Tth111I GACNNNGTC 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 629
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 964
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 2 cut(s) 693, 771
ZraI GACGTC 2 cut(s) 129, 834
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.